Ppp1r2-ps1 (protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 1) - Rat Genome Database

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Gene: Ppp1r2-ps1 (protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ppp1r2-ps1
Name: protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 1
RGD ID: 1562126
Description: Orthologous to human PPP1R2C (PPP1R2 family member C).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: ENSRNOG00000069720; LOC100362389; LOC302511; Ppp1r2l1; Ppp1r2p9; protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9; protein phosphatase 1, regulatory (inhibitor) subunit 2-like 1; protein phosphatase 1, regulatory subunit 2-like; RGD1562126; similar to RIKEN cDNA 4930403L05
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Ppp1r2  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X10,364,491 - 10,365,367 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.2X7,712,093 - 7,712,969 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX7,712,073 - 7,712,975 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX7,712,073 - 7,712,975 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX7,848,523 - 7,849,399 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X11,346,538 - 11,347,414 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X7,633,250 - 7,634,126 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X8,489,313 - 8,490,189 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X9,288,649 - 9,289,525 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X19,569,715 - 19,570,591 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.4X19,569,718 - 19,576,348 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX8,263,584 - 8,264,460 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse:




References
Additional References at PubMed
PMID:15632090  


Genomics

Variants

.
Variants in Ppp1r2-ps1
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149314046933Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000096727   ⟹   ENSRNOP00000094675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX7,712,073 - 7,712,975 (+)Ensembl
RefSeq Acc Id: XM_001059571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX8,263,587 - 8,270,201 (+)RGD
RefSeq Acc Id: XM_228699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4X19,569,718 - 19,576,348 (+)RGD
Protein Sequences
GenBank Protein EDL97662 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000094675   ⟸   ENSRNOT00000096727

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562126 AgrOrtholog
BioCyc Gene G2FUF-3104 BioCyc
Ensembl Genes ENSRNOG00000069720 Ensembl
NCBI Gene Ppp1r2-ps1 ENTREZGENE
PhenoGen Ppp1r2-ps1 PhenoGen
RatGTEx ENSRNOG00000069720 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Ppp1r2-ps1  protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 1  ENSRNOG00000069720    Data merged from RGD:150343623 737654 PROVISIONAL
2021-08-31 ENSRNOG00000069720        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-09-08 Ppp1r2-ps1  protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 1  LOC100362389  protein phosphatase 1, regulatory subunit 2-like  Data merged from RGD:2318298 737654 APPROVED
2011-06-09 Ppp1r2-ps1  protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 1  Ppp1r2l1  protein phosphatase 1, regulatory (inhibitor) subunit 2-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100362389  protein phosphatase 1, regulatory subunit 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-12-23 Ppp1r2l1  protein phosphatase 1, regulatory (inhibitor) subunit 2-like 1  Ppp1r2p9  protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-18 Ppp1r2p9  protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9  RGD1562126_predicted  similar to RIKEN cDNA 4930403L05 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562126_predicted  similar to RIKEN cDNA 4930403L05 (predicted)  LOC302511  similar to RIKEN cDNA 4930403L05  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302511  similar to RIKEN cDNA 4930403L05      Symbol and Name status set to provisional 70820 PROVISIONAL