| Gene: Wdr97 (WD repeat domain 97) Rattus norvegicus |
|
 Analyze |
|
| Symbol: |
Wdr97 |
| Name: |
WD repeat domain 97 |
| RGD ID: |
1562063 |
| Description: |
Orthologous to human WDR97 (WD repeat domain 97); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A. |
| Type: |
protein-coding
|
| RefSeq Status: |
PROVISIONAL |
| Previously known as: |
LOC500896; RGD1562063; similar to KIAA1875 protein; WD repeat-containing protein 97 |
| RGD Orthologs |
|
| Alliance Orthologs |
|
| More Info |
more info ...
|
| More Info |
| Species |
Gene symbol and name |
Data Source |
Assertion derived from |
less info ...
|
| Orthologs 1 |
| Homo sapiens (human): |
WDR97 (WD repeat domain 97) |
HGNC |
EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther |
| Mus musculus (house mouse): |
Wdr97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Chinchilla lanigera (long-tailed chinchilla): |
Wdr97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Pan paniscus (bonobo/pygmy chimpanzee): |
WDR97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Canis lupus familiaris (dog): |
WDR97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Ictidomys tridecemlineatus (thirteen-lined ground squirrel): |
Wdr97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Sus scrofa (pig): |
WDR97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Chlorocebus sabaeus (green monkey): |
WDR97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Heterocephalus glaber (naked mole-rat): |
Wdr97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Rattus rattus (black rat): |
Wdr97 (WD repeat domain 97) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Alliance orthologs 3 |
| Homo sapiens (human): |
WDR97 (WD repeat domain 97)
|
Alliance |
DIOPT (HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid) |
| Mus musculus (house mouse): |
Wdr97 (WD repeat domain 97)
|
Alliance |
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid) |
| Danio rerio (zebrafish): |
si:ch73-174h16.5
|
Alliance |
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid) |
| Danio rerio (zebrafish): |
si:ch73-174h16.5
|
Alliance |
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|SonicParanoid) |
| Xenopus tropicalis (tropical clawed frog): |
wdr97
|
Alliance |
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid) |
|
| Latest Assembly: |
GRCr8 - GRCr8 Assembly |
| Position: |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 7 | 109,958,945 - 109,967,687 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 7 | 109,959,030 - 109,967,698 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 7 | 108,078,280 - 108,087,028 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 7 | 108,078,337 - 108,087,034 (+) | Ensembl | | | | mRatBN7.2 | Rnor_6.0 | 7 | 117,420,779 - 117,429,497 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 7 | 117,420,788 - 117,429,504 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 117,408,407 - 117,417,227 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 7 | 114,405,497 - 114,414,108 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 7 | 104,430,636 - 104,439,354 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | q34 | NCBI | | | | |
|
| JBrowse: |
|
| Wdr97 | Rat | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | EXP | | 6480464 | Tetrachlorodibenzodioxin results in increased expression of WDR97 mRNA | CTD | PMID:32109520 | | Wdr97 | Rat | 2,3,7,8-tetrachlorodibenzodioxine | decreases expression | EXP | | 6480464 | Tetrachlorodibenzodioxin results in decreased expression of WDR97 mRNA | CTD | PMID:33387578 | | Wdr97 | Rat | 2,3,7,8-Tetrachlorodibenzofuran | increases expression | EXP | | 6480464 | 2,3,7,8-tetrachlorodibenzofuran results in increased expression of WDR97 mRNA | CTD | PMID:32109520 | | Wdr97 | Rat | aflatoxin B1 | increases methylation | ISO | WDR97 (Homo sapiens) | 6480464 | Aflatoxin B1 results in increased methylation of WDR97 exon | CTD | PMID:30157460 | | Wdr97 | Rat | aristolochic acid A | increases expression | ISO | WDR97 (Homo sapiens) | 6480464 | aristolochic acid I results in increased expression of WDR97 mRNA | CTD | PMID:33212167 | | Wdr97 | Rat | arsane | affects methylation | ISO | WDR97 (Homo sapiens) | 6480464 | Arsenic affects the methylation of WDR97 gene | CTD | PMID:25304211 | | Wdr97 | Rat | arsenic atom | affects methylation | ISO | WDR97 (Homo sapiens) | 6480464 | Arsenic affects the methylation of WDR97 gene | CTD | PMID:25304211 | | Wdr97 | Rat | benzo[a]pyrene | affects methylation | ISO | WDR97 (Homo sapiens) | 6480464 | Benzo(a)pyrene affects the methylation of WDR97 promoter | CTD | PMID:27901495 | | Wdr97 | Rat | bisphenol A | decreases expression | EXP | | 6480464 | bisphenol A results in decreased expression of WDR97 mRNA | CTD | PMID:25181051 | | Wdr97 | Rat | cadmium atom | multiple interactions | ISO | WDR97 (Homo sapiens) | 6480464 | [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of WDR97 more ... | CTD | PMID:35301059 | | Wdr97 | Rat | cadmium dichloride | multiple interactions | ISO | WDR97 (Homo sapiens) | 6480464 | [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of WDR97 more ... | CTD | PMID:35301059 | | Wdr97 | Rat | endosulfan | increases expression | EXP | | 6480464 | Endosulfan results in increased expression of WDR97 mRNA | CTD | PMID:29391264 | | Wdr97 | Rat | okadaic acid | decreases expression | ISO | WDR97 (Homo sapiens) | 6480464 | Okadaic Acid results in decreased expression of WDR97 mRNA | CTD | PMID:38832940 | | Wdr97 | Rat | ozone | multiple interactions | ISO | WDR97 (Homo sapiens) | 6480464 | [Air Pollutants results in increased abundance of Ozone] which affects the expression of WDR97 mRNA | CTD | PMID:35430440 | | Wdr97 | Rat | sodium arsenite | increases expression | ISO | WDR97 (Homo sapiens) | 6480464 | sodium arsenite results in increased expression of WDR97 mRNA | CTD | PMID:38568856 | | Wdr97 | Rat | thioacetamide | increases expression | EXP | | 6480464 | Thioacetamide results in increased expression of WDR97 mRNA | CTD | PMID:34492290 | | Wdr97 | Rat | trichloroethene | decreases expression | EXP | | 6480464 | Trichloroethylene results in decreased expression of WDR97 mRNA | CTD | PMID:33387578 | | Wdr97 | Rat | triphenyl phosphate | affects expression | ISO | WDR97 (Homo sapiens) | 6480464 | triphenyl phosphate affects the expression of WDR97 mRNA | CTD | PMID:37042841 | | Wdr97 | Rat | valproic acid | increases methylation | ISO | WDR97 (Homo sapiens) | 6480464 | Valproic Acid results in increased methylation of WDR97 gene | CTD | PMID:29154799 | |
References
Genomics
Comparative Map Data
Wdr97 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 7 | 109,958,945 - 109,967,687 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 7 | 109,959,030 - 109,967,698 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 7 | 108,078,280 - 108,087,028 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 7 | 108,078,337 - 108,087,034 (+) | Ensembl | | | | mRatBN7.2 | Rnor_6.0 | 7 | 117,420,779 - 117,429,497 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 7 | 117,420,788 - 117,429,504 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 117,408,407 - 117,417,227 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 7 | 114,405,497 - 114,414,108 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 7 | 104,430,636 - 104,439,354 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | q34 | NCBI | | | | |
|
WDR97 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 8 | 144,107,739 - 144,118,328 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 8 | 144,107,726 - 144,118,328 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 8 | 145,162,642 - 145,173,231 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 8 | 145,234,623 - 145,245,206 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Celera | 8 | 141,500,152 - 141,510,742 (+) | NCBI | | Celera | | | Cytogenetic Map | 8 | q24.3 | NCBI | | | | | HuRef | 8 | 140,438,512 - 140,449,102 (+) | NCBI | | HuRef | | | CHM1_1 | 8 | 145,203,012 - 145,213,602 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 8 | 145,268,535 - 145,279,125 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
Wdr97 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 15 | 76,238,649 - 76,249,141 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 15 | 76,238,632 - 76,249,401 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 15 | 76,354,449 - 76,364,941 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 15 | 76,354,432 - 76,365,201 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 15 | 76,184,974 - 76,192,269 (+) | MERGE | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | Celera | 15 | 77,854,510 - 77,863,925 (+) | NCBI | | Celera | | | Cytogenetic Map | 15 | D3 | NCBI | | | | |
|
Wdr97 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955454 | 2,769,387 - 2,777,921 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955454 | 2,769,356 - 2,778,024 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
WDR97 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 7 | 161,597,299 - 161,605,993 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 8 | 137,127,180 - 137,139,612 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 8 | 140,874,055 - 140,882,725 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 8 | 143,865,981 - 143,874,738 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | |
|
WDR97 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 13 | 37,601,804 - 37,612,044 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 13 | 37,565,502 - 37,577,451 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 13 | 38,078,032 - 38,090,010 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 13 | 38,076,846 - 38,088,425 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 13 | 37,750,090 - 37,760,466 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 13 | 37,878,770 - 37,889,123 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 13 | 38,354,949 - 38,366,912 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
|
Wdr97 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
WDR97 (Sus scrofa - pig) |
|
WDR97 (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 8 | 138,322,976 - 138,327,761 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 8 | 138,319,103 - 138,327,663 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666039 | 1,544,110 - 1,552,772 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Wdr97 (Heterocephalus glaber - naked mole-rat) |
|
Wdr97 (Rattus rattus - black rat) |
|
miRNA Target Status (No longer updated)
Predicted Target Of
| Count of predictions: | 71 | | Count of miRNA genes: | 68 | | Interacting mature miRNAs: | 69 | | Transcripts: | ENSRNOT00000049198 | | Prediction methods: | Microtar, Rnahybrid | | Result types: | miRGate_prediction | |