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Gene: C7h12orf56 (similar to human chromosome 12 open reading frame 56) Rattus norvegicus

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Symbol:

C7h12orf56

Name:

similar to human chromosome 12 open reading frame 56

RGD ID:

1561648

Description:

Orthologous to human C12orf56 (chromosome 12 open reading frame 56); INTERACTS WITH bisphenol A; genistein; paracetamol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical LOC362888; hypothetical protein LOC500841; LOC102555868; LOC103690058; LOC362888; LOC500841; RGD1561648; RGD1564122; RGD1564122; uncharacterized LOC102555868; uncharacterized LOC103690058; uncharacterized protein C12orf56 homolog; uncharacterized protein LOC103690058; uncharacterized protein LOC500841

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	59,055,283 - 59,106,900 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	59,056,310 - 59,106,407 (+)	Ensembl				GRCr8
mRatBN7.2	7	57,170,406 - 57,220,930 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	57,170,992 - 57,220,925 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	59,082,294 - 59,134,598 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	61,285,169 - 61,337,473 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	61,062,877 - 61,115,177 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	63,747,676 - 63,860,603 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	63,747,577 - 63,860,620 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	65,932,568 - 65,938,974 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	7	64,061,561 - 64,084,067 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	60,957,009 - 61,009,152 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	54,683,742 - 54,734,309 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2-hydroxypropanoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

dorsomorphin (ISO)

entinostat (ISO)

genistein (EXP)

lipopolysaccharide (ISO)

panobinostat (ISO)

paracetamol (EXP)

paraquat (EXP)

rac-lactic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vorinostat (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

C7h12orf56
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	59,055,283 - 59,106,900 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	59,056,310 - 59,106,407 (+)	Ensembl				GRCr8
mRatBN7.2	7	57,170,406 - 57,220,930 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	57,170,992 - 57,220,925 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	59,082,294 - 59,134,598 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	61,285,169 - 61,337,473 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	61,062,877 - 61,115,177 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	63,747,676 - 63,860,603 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	63,747,577 - 63,860,620 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	65,932,568 - 65,938,974 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	7	64,061,561 - 64,084,067 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	60,957,009 - 61,009,152 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	54,683,742 - 54,734,309 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

C12orf56
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	64,264,762 - 64,390,758 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	64,264,762 - 64,390,758 (-)	Ensembl			hg38	GRCh38
GRCh37	12	64,658,542 - 64,784,538 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	62,947,030 - 63,070,612 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	64,326,691 - 64,449,194 (-)	NCBI		Celera
Cytogenetic Map	12	q14.2	NCBI
HuRef	12	61,713,171 - 61,836,373 (-)	NCBI		HuRef
CHM1_1	12	64,628,454 - 64,751,439 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	64,243,579 - 64,369,391 (-)	NCBI		T2T-CHM13v2.0

D930020B18Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	121,477,006 - 121,530,239 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	121,477,493 - 121,529,820 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	121,641,101 - 121,694,334 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	121,641,588 - 121,693,915 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	121,078,757 - 121,130,970 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	121,044,648 - 121,096,974 (+)	NCBI		MGSCv36	mm8
Celera	10	124,020,657 - 124,077,988 (+)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	69.89	NCBI

CUNH12orf56
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	11,093,502 - 11,174,104 (-)	Ensembl
ChiLan1.0	NW_004955458	11,091,456 - 11,144,074 (-)	NCBI	ChiLan1.0	ChiLan1.0

C10H12orf56
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	29,976,023 - 30,095,018 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	29,972,794 - 30,091,736 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	24,529,850 - 24,647,923 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	25,029,679 - 25,144,588 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	25,029,679 - 25,147,432 (+)	Ensembl			panPan2	panpan1.1

C10H12orf56
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	7,001,215 - 7,114,296 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	7,025,337 - 7,114,389 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	6,937,173 - 7,049,873 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	7,111,347 - 7,224,118 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	7,135,218 - 7,224,815 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	6,977,350 - 7,090,054 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	7,229,078 - 7,341,783 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	7,360,512 - 7,473,247 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH12orf56
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	51,395,632 - 51,470,767 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936545	2,639,275 - 2,714,405 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936545	2,638,854 - 2,714,494 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C5H12orf56
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	28,716,358 - 28,817,810 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	28,716,366 - 28,819,136 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	31,898,323 - 31,974,575 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C11H12orf56
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	59,961,589 - 60,074,210 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	185,730,132 - 185,847,278 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH12orf56
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	3,963,901 - 4,029,875 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624802	3,963,753 - 4,029,936 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C1H12orf56
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	200,082,669 - 200,130,686 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C7h12orf56
447 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	5
Count of miRNA genes:	5
Interacting mature miRNAs:	5
Transcripts:	ENSRNOT00000067395
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	49137999	67614020	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	49682832	63890004	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	5	41	132	53	58	27	32	27	6	221	97	11	117	78	92	31	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067395 ⟹ ENSRNOP00000060128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	59,056,310 - 59,106,407 (+)	Ensembl
mRatBN7.2 Ensembl	7	57,170,992 - 57,220,925 (+)	Ensembl
Rnor_6.0 Ensembl	7	63,747,676 - 63,860,598 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080052 ⟹ ENSRNOP00000074201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	63,747,686 - 63,860,555 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086123 ⟹ ENSRNOP00000072113

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	63,747,577 - 63,860,620 (+)	Ensembl

RefSeq Acc Id:

NM_001127567 ⟹ NP_001121039

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,056,477 - 59,106,412 (+)	NCBI
mRatBN7.2	7	57,170,992 - 57,220,930 (+)	NCBI
Rnor_6.0	7	63,747,676 - 63,860,603 (+)	NCBI
Rnor_5.0	7	65,932,568 - 65,938,974 (-)	NCBI
RGSC_v3.4	7	60,957,009 - 61,009,152 (+)	RGD
Celera	7	54,683,742 - 54,734,309 (-)	RGD

Sequence:

show sequence

CGGGTGTCGCATGGCCAGCCCCGCGCGATCTGGCTTCCCGGCGCGCACGAATTGCCGTCTGGAC
GCGTTCTTGCGGCGGCACCTGCCTCCGGAGGTGTACGACGCGGTCCGCGCCTATGAGCCGTGCA
TCGTGGTGTCGGACGCCGAGAAGCACTCGTTCAAGTACGTGGTGCTGAGCGACCGACTCATCTA
CCTGACCGAGAACCCGCCCAAGTCCATCCGGCGGGTCGTGGCCCTGCGGGACGTCGTGGCCATT
GACTTGATTGACGATTACCCAGAGTTTCTGAATTCACCAGACAGAGAGATCAACCAGCACATTC
GAATCATCTATTCTTCAACAGTCTTGAAAAAGGAGCGCGGGAAAGCGAAAGGTGTCCGGAAATT
CCTGTTTCCAGTTCACCACAGCAATGCTAACAGAAAGGTTAAGCAAGAGAATAATGCCCCTACC
TTTTGGAGAAGAAAAGTTTATAGAAGTCAGAATGAATCCTCTCTCAGGTCCCAGCAGGAGAGCA
ACACTCCATTCAAGGACCCAACTCCCCATCCTTCAGACCTTAAGCAACTGTCCCCTGCAAGCCA
AGGCGCCTCTCGGCCTTTGCCTACCCTCTCTAGTTGCCAGTCTGGGGCAGCTACTGACATGCCT
ACCTGCTCCCTATCTCTTGCATCAAACACAGAAGAACCCCAGGAGCTTCCAGATCCCAGAGACT
TCCCAAGAGAAGGCTCTTTCAGGTTTGATAGGAACGAAAGTGTGTTTGGCTTAGGAAGTTCTCT
CCCAGCGTCTCCTTCGAACAGCTGTTCGAGCCTAGAGAAGGAGGAGTCAGAACTTCACCTGTAT
ATTATTTCTGCAACCTCGTCCATATTTCTGCACCTAAAGAGTTCGTGGAACAACTACATTATAA
GAGCCACTCTTTTACAAGATCCTCTGTGTGGCACTGCGCAAAGTCATGTCCTCAGGAATCGGAA
GCCATACAGGTCTGAGGAGAAAATTAAGCAGTTCTGTCAACTGAAGTCTGAACTTTTTCTTAAA
GACAATACTTTGAGGAAGATATTGTATTTAATTGTGGAACTTAGAGTGGCAGCGCAGAGAAGTT
TCATTCTAAAAAGACTTTTCTGGAAAACCAGTGAGCTTTTCTACTTCCTAGTGAACAAACTTCA
TGAATATTTGCCAGAGTCTAGGGATAAGCGTGCATTTCAGAACAAAAGCCAGAGGGCCGATGAG
CTCCTGGCATGTATTGAAATTATACAGACCCTAGGATTGATGTTCAGAGAAACAGAAATTGAAT
CCTCACGATTGAACACATTGGCAGCTAAGAAGGGAACACTGTTTAATCTCTTAGTGATTCTAAT
CAGCAAGCCCAAGGTTCCAAAGCCCTGCTCTGTGTCTGATGCCCAGCTGGTGGCTGATCCAACC
TCAGCGGAAGACGCAGCATCTTCCGACGGTCATTTACAGAAGCTTATCCTGGAGTACACGGACA
CCGCGACAGCGCTGCTCTACGAGATCCTGCTTGTCTTTCAGCAGGGGAATCTTGGACTGGGATC
CACAAAGTTTGCTATAAGCTGGATGATGTCCTTTCTACAGAGCTGTCCTTCCATCATGGCTTTT
GTGGCTGGTATCGTGGAAGGAGTGGTGAGAGGGCTCTCAGCCTCGCTCCAGCTGCTGACTCCTT
GCCAAGCGGTTCTGTTGTACCAGCAGTTCTACATCCTCAGGAGCTGCCTGCAGCATAGCAAGGC
TCTGGCCGAGTATATCAGGAACGACCACCGTGAGGAGTTCAGGTACTTTATTCACATGCCAGCA
CTGGAGAAGAGGCTCCCTGGATGTTACCCCATCACAAAGCCCACCACTCAGCTCTGTCACGAAG
TTCTACAGCTGATTGAACAGAAACAGTGTGCAGCATGTTAGAGGAGATAAAAAGTATAAAGTAT
TCACTAAAGTCACTACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039079744 ⟹ XP_038935672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,288 - 59,104,159 (+)	NCBI
mRatBN7.2	7	57,170,408 - 57,220,893 (+)	NCBI

RefSeq Acc Id:

XM_039079747 ⟹ XP_038935675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,286 - 59,097,733 (+)	NCBI
mRatBN7.2	7	57,170,407 - 57,212,252 (+)	NCBI

RefSeq Acc Id:

XM_063264104 ⟹ XP_063120174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,285 - 59,097,588 (+)	NCBI

RefSeq Acc Id:

XM_063264105 ⟹ XP_063120175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,064,794 - 59,106,900 (+)	NCBI

RefSeq Acc Id:

XR_005486700

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,292 - 59,099,864 (+)	NCBI
mRatBN7.2	7	57,170,407 - 57,214,380 (+)	NCBI

RefSeq Acc Id:

XR_005486701

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,291 - 59,099,861 (+)	NCBI
mRatBN7.2	7	57,170,407 - 57,214,378 (+)	NCBI

RefSeq Acc Id:

XR_005486704

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,353 - 59,099,861 (+)	NCBI
mRatBN7.2	7	57,170,408 - 57,214,377 (+)	NCBI

RefSeq Acc Id:

XR_010053026

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,292 - 59,099,880 (+)	NCBI

RefSeq Acc Id:

XR_010053027

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,292 - 59,099,856 (+)	NCBI

RefSeq Acc Id:

XR_010053028

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,353 - 59,099,856 (+)	NCBI

RefSeq Acc Id:

XR_010053029

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,285 - 59,097,726 (+)	NCBI

RefSeq Acc Id:

XR_010053030

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	59,055,283 - 59,096,814 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001121039	(Get FASTA)	NCBI Sequence Viewer
	XP_038935672	(Get FASTA)	NCBI Sequence Viewer
	XP_038935675	(Get FASTA)	NCBI Sequence Viewer
	XP_063120174	(Get FASTA)	NCBI Sequence Viewer
	XP_063120175	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66520	(Get FASTA)	NCBI Sequence Viewer
	EDL84475	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060128
	ENSRNOP00000060128.2

RefSeq Acc Id:

NP_001121039 ⟸ NM_001127567

- UniProtKB:

B2GV44 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASPARSGFPARTNCRLDAFLRRHLPPEVYDAVRAYEPCIVVSDAEKHSFKYVVLSDRLIYLTE
NPPKSIRRVVALRDVVAIDLIDDYPEFLNSPDREINQHIRIIYSSTVLKKERGKAKGVRKFLFP
VHHSNANRKVKQENNAPTFWRRKVYRSQNESSLRSQQESNTPFKDPTPHPSDLKQLSPASQGAS
RPLPTLSSCQSGAATDMPTCSLSLASNTEEPQELPDPRDFPREGSFRFDRNESVFGLGSSLPAS
PSNSCSSLEKEESELHLYIISATSSIFLHLKSSWNNYIIRATLLQDPLCGTAQSHVLRNRKPYR
SEEKIKQFCQLKSELFLKDNTLRKILYLIVELRVAAQRSFILKRLFWKTSELFYFLVNKLHEYL
PESRDKRAFQNKSQRADELLACIEIIQTLGLMFRETEIESSRLNTLAAKKGTLFNLLVILISKP
KVPKPCSVSDAQLVADPTSAEDAASSDGHLQKLILEYTDTATALLYEILLVFQQGNLGLGSTKF
AISWMMSFLQSCPSIMAFVAGIVEGVVRGLSASLQLLTPCQAVLLYQQFYILRSCLQHSKALAE
YIRNDHREEFRYFIHMPALEKRLPGCYPITKPTTQLCHEVLQLIEQKQCAAC

hide sequence

Ensembl Acc Id:

ENSRNOP00000060128 ⟸ ENSRNOT00000067395

Ensembl Acc Id:

ENSRNOP00000074201 ⟸ ENSRNOT00000080052

Ensembl Acc Id:

ENSRNOP00000072113 ⟸ ENSRNOT00000086123

RefSeq Acc Id:	XP_038935675 ⟸ XM_039079747
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038935672 ⟸ XM_039079744
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063120174 ⟸ XM_063264104
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063120175 ⟸ XM_063264105
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2GV44-F1-model_v2	AlphaFold	B2GV44	1-628	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561648	AgrOrtholog
BioCyc Gene	G2FUF-33868	BioCyc
Ensembl Genes	ENSRNOG00000023824	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067395	ENTREZGENE
	ENSRNOT00000067395.5	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133986	IMAGE-MGC_LOAD
InterPro	DUF4551	UniProtKB/TrEMBL
KEGG Report	rno:500841	UniProtKB/TrEMBL
MGC_CLONE	MGC:188103	IMAGE-MGC_LOAD
NCBI Gene	500841	ENTREZGENE
PANTHER	PTHR35354	UniProtKB/TrEMBL
	RGD1561648	UniProtKB/TrEMBL
Pfam	DUF4551	UniProtKB/TrEMBL
PhenoGen	C7h12orf56	PhenoGen
RatGTEx	ENSRNOG00000023824	RatGTEx
UniProt	B2GV44	ENTREZGENE, UniProtKB/TrEMBL
	F7F194_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-07-21	C7h12orf56	similar to human chromosome 12 open reading frame 56	RGD1561648	RGD1561648	Name and Symbol changed	629549	APPROVED
2021-03-09	RGD1561648	RGD1561648	LOC103690058	uncharacterized LOC103690058	Data merged from RGD:9211942	737654	PROVISIONAL
2015-07-29	RGD1561648	RGD1561648	LOC102555868	uncharacterized LOC102555868	Data merged from RGD:7591914	737654	PROVISIONAL
2015-07-29	RGD1561648	RGD1561648	RGD1564122	RGD1564122	Data merged from RGD:1564122	737654	PROVISIONAL
2014-08-25	LOC103690058	uncharacterized LOC103690058			Symbol and Name status set to provisional	70820	PROVISIONAL
2013-12-18	LOC102555868	uncharacterized LOC102555868			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1561648	RGD1561648	RGD1561648_predicted	RGD1561648 (predicted)	'predicted' is removed	2292626	APPROVED
2008-04-30	RGD1564122	RGD1564122	RGD1564122_predicted	RGD1564122 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564122_predicted	RGD1564122 (predicted)	LOC362888	hypothetical LOC362888	Symbol and Name status set to approved	1299863	APPROVED
2006-03-07	RGD1561648_predicted	RGD1561648 (predicted)	LOC500841	LOC500841	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC362888	hypothetical LOC362888			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-02-09	LOC500841	LOC500841			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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