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Gene: Pgcka1 (PDCD10 and GCKIII kinases associated 1) Rattus norvegicus

Analyze

Symbol:

Pgcka1 (Ensembl: C14h4orf19)

Name:

PDCD10 and GCKIII kinases associated 1 (Ensembl:similar to human chromosome 4 open reading frame 19)

RGD ID:

1561612

Description:

Predicted to enable RNA binding activity. Predicted to be involved in regulation of cell cycle. Predicted to be located in cell periphery. Orthologous to human PGCKA1 (PDCD10 and GCKIII kinases associated 1); INTERACTS WITH 17beta-estradiol (ortholog); 3-methylcholanthrene (ortholog); 4,4'-sulfonyldiphenol (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ADP/ATP translocase 3; ADP/ATP translocase 3-like; C14h4orf19; hypothetical protein LOC498368; LOC100909799; LOC498368; PDCD10 and GCKIII kinases-associated protein 1; similar to human chromosome 4 open reading frame 19; similar to RIKEN cDNA 0610040J01; uncharacterized protein C4orf19 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	44,740,965 - 44,832,180 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	44,740,972 - 44,831,613 (-)	Ensembl				GRCr8
mRatBN7.2	14	44,387,386 - 44,478,344 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	44,387,393 - 44,478,041 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	44,750,308 - 44,774,441 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	46,050,240 - 46,074,373 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	44,530,364 - 44,554,499 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	46,050,752 - 46,134,770 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	46,050,750 - 46,054,022 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	45,855,971 - 45,858,411 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	47,040,366 - 47,158,361 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	43,528,486 - 43,618,262 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cholestasis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

entinostat (ISO)

etoposide (ISO)

fonofos (ISO)

fulvestrant (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

nickel atom (ISO)

panobinostat (ISO)

paracetamol (ISO)

parathion (ISO)

phenylmercury acetate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

terbufos (ISO)

Theaflavin 3,3'-digallate (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of cell cycle (IEA,ISO,ISS)

Cellular Component

cell periphery (IEA,ISO)

plasma membrane (IEA)

Molecular Function

protein binding (ISO)

RNA binding (ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Pgcka1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	44,740,965 - 44,832,180 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	44,740,972 - 44,831,613 (-)	Ensembl				GRCr8
mRatBN7.2	14	44,387,386 - 44,478,344 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	44,387,393 - 44,478,041 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	44,750,308 - 44,774,441 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	46,050,240 - 46,074,373 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	44,530,364 - 44,554,499 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	46,050,752 - 46,134,770 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	46,050,750 - 46,054,022 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	45,855,971 - 45,858,411 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	47,040,366 - 47,158,361 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	43,528,486 - 43,618,262 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

PGCKA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	37,453,255 - 37,593,510 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	37,453,439 - 37,624,344 (+)	Ensembl			hg38	GRCh38
GRCh37	4	37,455,547 - 37,595,132 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	37,131,947 - 37,271,527 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	37,895,413 - 38,034,606 (+)	NCBI		Celera
Cytogenetic Map	4	p14	NCBI
HuRef	4	36,779,258 - 36,919,665 (+)	NCBI		HuRef
CHM1_1	4	37,454,676 - 37,594,129 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	37,421,994 - 37,562,645 (+)	NCBI		T2T-CHM13v2.0

Pgcka1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	63,969,833 - 64,056,968 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	63,969,706 - 64,056,968 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	63,811,657 - 63,899,626 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	63,812,363 - 63,899,625 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	64,203,734 - 64,290,858 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	64,091,499 - 64,178,754 (+)	NCBI		MGSCv36	mm8
Celera	5	61,110,672 - 61,191,582 (+)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	32.8	NCBI

Pgcka1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	9,540,825 - 9,565,119 (-)	Ensembl
ChiLan1.0	NW_004955443	9,540,047 - 9,628,483 (-)	NCBI	ChiLan1.0	ChiLan1.0

PGCKA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	37,642,593 - 37,784,421 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	37,833,958 - 37,976,357 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	31,781,515 - 31,922,413 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	37,742,659 - 37,778,767 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	37,742,659 - 37,808,076 (+)	Ensembl			panPan2	panpan1.1

C3H4orf19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	74,570,092 - 74,656,732 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	74,570,708 - 74,572,454 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	77,117,898 - 77,202,337 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	75,351,437 - 75,436,158 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	75,351,437 - 75,353,165 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	74,617,844 - 74,702,239 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	74,764,882 - 74,849,234 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	75,142,817 - 75,227,298 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pgcka1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	40,683,694 - 40,777,942 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	5,520,275 - 5,614,537 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	5,592,667 - 5,614,527 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C8H4orf19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	29,013,082 - 29,103,160 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	29,012,884 - 29,103,163 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	30,428,959 - 30,516,355 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PGCKA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	12,690,136 - 12,821,129 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	12,690,608 - 12,694,799 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	59,110,635 - 59,152,378 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pgcka1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	18,619,281 - 18,621,774 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pgcka1
864 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	90
Count of miRNA genes:	71
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000002982
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	38023710	83023710	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39009444	84009444	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	31238080	72970315	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	38023710	83023710	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22521517	67521517	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42616258	99224555	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	38023710	83023710	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39411170	87582095	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	38023710	83023710	Rat

Markers in Region

D14Rat120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	44,781,955 - 44,782,097 (+)	Marker Load Pipeline
mRatBN7.2	14	44,428,380 - 44,428,522 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	46,083,897 - 46,084,038	NCBI	Rnor6.0
Rnor_5.0	14	45,885,797 - 45,885,938	UniSTS	Rnor5.0
RGSC_v3.4	14	47,091,611 - 47,091,753	RGD	RGSC3.4
RGSC_v3.4	14	47,091,612 - 47,091,753	UniSTS	RGSC3.4
Celera	14	43,568,586 - 43,568,727	UniSTS
RGSC_v3.1	14	47,094,002 - 47,094,144	RGD
SHRSP x BN Map	14	28.2599	UniSTS
SHRSP x BN Map	14	28.2599	RGD
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	81	59	6	345	181	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001017500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002982 ⟹ ENSRNOP00000002982

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	44,740,972 - 44,831,613 (-)	Ensembl
mRatBN7.2 Ensembl	14	44,387,393 - 44,478,041 (-)	Ensembl
Rnor_6.0 Ensembl	14	46,050,750 - 46,054,022 (-)	Ensembl

RefSeq Acc Id:

NM_001017500 ⟹ NP_001017500

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,740,971 - 44,831,613 (-)	NCBI
mRatBN7.2	14	44,387,392 - 44,478,041 (-)	NCBI
Rnor_6.0	14	46,050,752 - 46,134,770 (-)	NCBI
Rnor_5.0	14	45,855,971 - 45,858,411 (-)	NCBI
RGSC_v3.4	14	47,040,366 - 47,158,361 (+)	RGD
Celera	14	43,528,486 - 43,618,262 (-)	RGD

Sequence:

show sequence

CGCGAAGCCATGGGCGCCGCGATTCTGGAGCCGCCGCCCCGCCTCAGGAAGAGCAGTTTAACAC
CCAGAGAAGTCTAATGGACAAGCTCCCCAGCAGATGGTGACAAAAAATAATCCAGATGGGGTGC
AGGTGTTGTAAGATGATACAAAGCTATCTCTTTGATCCAGTTCAAGTGCCCTCCCCTGGTTTTG
TCAATGAAGTAAACAACTGCAAGTTGGAGGAGGATGACACTGTCAGACTAAAAGGCACCCAGAA
CAGTGAGGTCGAGGTACCTGGGAGCACCCTGCATAGTGGTAGCCTGAGCAAACCAGACAGCAGT
GGCAGTACAACTGGTCTACCTTGCCAAGGATCACTAACCCAGGAGGACTCAGAAGAGAGACCCT
GTGTGGAGAAGCATGGTATTGTCAACGGCATCAGACCCACTGCTACTCTGCAGTCTGTCAGGAG
TCCCAGACCCCAACAGGTTGACAGTGTCTCCTGGGCCAGCAGCCCCTGGGTAGCCACCATAGAC
AGTGCCCACCCGGCTCAACCCTTCCTTGAAGGCGAGGACTACAGGAAGCAAAGCTGCATGCTGC
CCACCTTGGAAGGGACCCAGATGGTGGGACATGGAGACTCCAGAGCCCCTGCTGAAGCCTTGGC
AGTGGCAGATCATATCCCATACATACCAGCCCCAGATTACCCCCAGGTCTGGAGCCCTGAGGTA
GACAATGTAAACCCTGAAGAAAAGGATTGTCTTTTTGAAAACCACTCTGAAGTGGAGCCTCTGC
CAGGCATTCACCCCAGGGTGAGCCAGCAGGGTTTGAGCATGCCCTTCTCTCTGAAGAGAAGCTG
GGACTCACTGAATGAGGCAGGGACAACAGAAGTTCTGAGTGTCTACTTTAAAGAGGAGGATCCC
ACTCAGCCTACACCAGTGGCTGATCCTGGGAATGAGCGGGAAGACCCCCACACCTACAACGGGA
ACAAGGAGGGTGCTGTGGTGGATGAGGACGCTGAGGTGGCAGAAGCCCTGGCAGCATTAGAAGC
TGCTACTGCAGGAGAAGATGCAGATGATGCCGATTAGGAGAGGGGCGAGATGAGGCAAGTGAGC
TGCAGTCACAGGGAGCAGATAGAGAGAAGCATGTGCCCGCTCTGCCAGCATGCCCCCGGCAGCC
TTACCAGCTGTACCACTCGTTTACACCTATTATCTCCTCATTGCCAGTACCTGTGCCATGCTGC
TTGTTGTACCCAGAATGCATTCAGAATGCTAGCATCAAAATAGGAGCGGGCCTTCATGTCCATG
ACCACAACAAGTGCAGAAGTTAAGTGGCTTGCATGCTGGCCTCAGAAGCTCCCCAAGAGGGAGC
ATCTGTGCAGATGTGCATGAGAATGCCCTGACATCCCCACACCTGATCCCAGGGGCACACAAAC
ATGGGCCATTCTGTTCGAATGTATTTCTTTACCTTATTTTTGAGAGCCAAATACTTCACCCAAC
CTAGAAAGGTAACTATTGACTTAAAGTGCCTACTGTGTGCTAGAGCTTAACTTCAGGGACAGTC
ACCCAGGGAACCATTAGCTAACCACTTGTTGAACATCAGGTTAAACTCAGTGCCCTTCAGGGTA
GAGCAGATTTGACCAGTGAACAAATGGTTAGTCCTCAGCTGTGCTATGAGAACACCTTGACCTT
AATTTTTTTTACACTATTACTTTTTAATCTCCTTTGGGATATGGGAGGCTAGCCAAAATACTTA
AAACTAGCATCATGCTTTAGGTTCAAGTTCATGAGTGTTTTGGAACAGCATAGCCATTCATGGA
GGGATTTGTGTCATTAAATGTCTGGTTCTCATTAAAGCATCACGGCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039092290 ⟹ XP_038948218

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,740,965 - 44,831,763 (-)	NCBI
mRatBN7.2	14	44,387,386 - 44,478,233 (-)	NCBI

RefSeq Acc Id:

XM_039092291 ⟹ XP_038948219

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,765,047 - 44,832,173 (-)	NCBI
mRatBN7.2	14	44,389,805 - 44,478,344 (-)	NCBI

RefSeq Acc Id:

XM_063273466 ⟹ XP_063129536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,775,646 - 44,832,180 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001017500	(Get FASTA)	NCBI Sequence Viewer
	NP_001423931	(Get FASTA)	NCBI Sequence Viewer
	XP_038948218	(Get FASTA)	NCBI Sequence Viewer
	XP_038948219	(Get FASTA)	NCBI Sequence Viewer
	XP_063129536	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79124	(Get FASTA)	NCBI Sequence Viewer
	EDL90100	(Get FASTA)	NCBI Sequence Viewer
	EDL90101	(Get FASTA)	NCBI Sequence Viewer
	EDL90102	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002982
	ENSRNOP00000002982.4
	ENSRNOP00055024308
	ENSRNOP00060021506
	ENSRNOP00065018123
GenBank Protein	Q6AYA8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001017500 ⟸ NM_001017500

- UniProtKB:

Q6AYA8 (UniProtKB/Swiss-Prot), A6JDI0 (UniProtKB/TrEMBL), A6JDH8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGCRCCKMIQSYLFDPVQVPSPGFVNEVNNCKLEEDDTVRLKGTQNSEVEVPGSTLHSGSLSKP
DSSGSTTGLPCQGSLTQEDSEERPCVEKHGIVNGIRPTATLQSVRSPRPQQVDSVSWASSPWVA
TIDSAHPAQPFLEGEDYRKQSCMLPTLEGTQMVGHGDSRAPAEALAVADHIPYIPAPDYPQVWS
PEVDNVNPEEKDCLFENHSEVEPLPGIHPRVSQQGLSMPFSLKRSWDSLNEAGTTEVLSVYFKE
EDPTQPTPVADPGNEREDPHTYNGNKEGAVVDEDAEVAEALAALEAATAGEDADDAD

hide sequence

Ensembl Acc Id:

ENSRNOP00000002982 ⟸ ENSRNOT00000002982

RefSeq Acc Id:	XP_038948218 ⟸ XM_039092290
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038948219 ⟸ XM_039092291
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063129536 ⟸ XM_063273466
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYA8-F1-model_v2	AlphaFold	Q6AYA8	1-313	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561612	AgrOrtholog
BioCyc Gene	G2FUF-15694	BioCyc
Ensembl Genes	ENSRNOG00000002191	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055017870	UniProtKB/Swiss-Prot
	ENSRNOG00060015662	UniProtKB/Swiss-Prot
	ENSRNOG00065014106	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000002982	ENTREZGENE
	ENSRNOT00000002982.6	UniProtKB/Swiss-Prot
	ENSRNOT00055030239	UniProtKB/Swiss-Prot
	ENSRNOT00060026831	UniProtKB/Swiss-Prot
	ENSRNOT00065023286	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7126862	IMAGE-MGC_LOAD
InterPro	DUF4699	UniProtKB/Swiss-Prot
KEGG Report	rno:498368	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94129	IMAGE-MGC_LOAD
NCBI Gene	498368	ENTREZGENE
PANTHER	CHROMOSOME 4 OPEN READING FRAME 19	UniProtKB/Swiss-Prot
	PTHR16106	UniProtKB/Swiss-Prot
Pfam	DUF4699	UniProtKB/Swiss-Prot
PhenoGen	Pgcka1	PhenoGen
RatGTEx	ENSRNOG00000002191	RatGTEx
	ENSRNOG00055017870	RatGTEx
	ENSRNOG00060015662	RatGTEx
	ENSRNOG00065014106	RatGTEx
UniProt	A6JDH8	ENTREZGENE, UniProtKB/TrEMBL
	A6JDI0	ENTREZGENE
	CD019_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	A6JDI0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-12-13	Pgcka1	PDCD10 and GCKIII kinases associated 1	C14h4orf19	similar to human chromosome 4 open reading frame 19	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2023-09-19	C14h4orf19	similar to human chromosome 4 open reading frame 19	LOC498368	similar to RIKEN cDNA 0610040J01	Symbol and Name Changed	1299863	APPROVED
2021-03-09	LOC498368	similar to RIKEN cDNA 0610040J01	LOC100909799	ADP/ATP translocase 3-like	Data merged from RGD:6501590	737654	PROVISIONAL
2012-07-05	LOC100909799	ADP/ATP translocase 3-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-02-09	LOC498368	similar to RIKEN cDNA 0610040J01			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD