Tcaim (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 8 | 131,292,275 - 131,323,557 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 8 | 131,292,351 - 131,323,571 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 8 | 122,414,827 - 122,446,105 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 122,414,818 - 122,446,092 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 8 | 128,009,149 - 128,039,228 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 8 | 126,208,089 - 126,238,169 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 8 | 124,033,818 - 124,063,909 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 8 | 131,845,673 - 131,876,896 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 8 | 131,845,696 - 131,875,786 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 8 | 131,000,653 - 131,031,936 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 8 | 127,504,542 - 127,534,632 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 8 | 121,532,682 - 121,562,771 (+) | NCBI | | Celera | | | Cytogenetic Map | 8 | q32 | NCBI | | | | |
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TCAIM (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 3 | 44,338,129 - 44,409,448 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 44,338,119 - 44,409,451 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 3 | 44,379,621 - 44,450,940 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 44,354,615 - 44,425,944 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Celera | 3 | 44,317,658 - 44,388,713 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | p21.31 | NCBI | | | | | HuRef | 3 | 44,423,208 - 44,495,408 (+) | NCBI | | HuRef | | | CHM1_1 | 3 | 44,329,711 - 44,401,052 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 44,353,987 - 44,425,287 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Tcaim (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 9 | 122,634,586 - 122,665,397 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 9 | 122,634,604 - 122,665,399 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 9 | 122,805,513 - 122,838,924 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 9 | 122,805,539 - 122,836,334 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 9 | 122,714,665 - 122,745,450 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 9 | 122,649,389 - 122,685,030 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 9 | 123,255,110 - 123,285,805 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | F4 | NCBI | | | | | cM Map | 9 | 73.14 | NCBI | | | | |
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Tcaim (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955420 | 27,016,085 - 27,038,533 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955420 | 27,014,846 - 27,046,932 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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TCAIM (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 2 | 44,284,856 - 44,356,436 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 44,289,640 - 44,361,204 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 44,227,736 - 44,299,271 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 45,286,700 - 45,357,543 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 3 | 45,286,942 - 45,357,543 (+) | Ensembl | | | panPan2 | panpan1.1 |
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TCAIM (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 23 | 1,956,677 - 1,998,701 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 23 | 1,909,344 - 1,998,055 (-) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 23 | 1,989,402 - 2,043,081 (-) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 23 | 2,200,727 - 2,254,473 (-) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 23 | 2,153,315 - 2,305,026 (-) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 23 | 2,041,336 - 2,095,002 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 23 | 2,165,782 - 2,219,449 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 23 | 2,134,058 - 2,187,753 (-) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Tcaim (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024405118 | 198,749,975 - 198,784,717 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936695 | 1,104,239 - 1,128,445 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936695 | 1,102,315 - 1,137,063 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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TCAIM (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 13 | 27,648,298 - 27,703,545 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 13 | 27,648,070 - 27,703,489 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 13 | 30,479,487 - 30,492,452 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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TCAIM (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 22 | 5,764,244 - 5,835,184 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 22 | 5,777,590 - 5,833,400 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666041 | 161,347,276 - 161,419,142 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Tcaim (Heterocephalus glaber - naked mole-rat) |
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Tcaim (Rattus rattus - black rat) |
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