Pxdn (peroxidasin) - Rat Genome Database

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Gene: Pxdn (peroxidasin) Rattus norvegicus
Analyze
Symbol: Pxdn
Name: peroxidasin
RGD ID: 1560694
Description: Predicted to enable heme binding activity; laminin-1 binding activity; and peroxidase activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in several processes, including extracellular matrix organization; hydrogen peroxide catabolic process; and protein homotrimerization. Predicted to be located in basement membrane; cell surface; and endoplasmic reticulum. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in anterior segment dysgenesis 7. Orthologous to human PXDN (peroxidasin); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314016; melanoma-associated antigen MG50; PE responsive protein c64; Perc64; peroxidasin homolog; peroxidasin homolog (Drosophila); similar to mKIAA0230 protein; Vpo1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8652,308,347 - 52,385,943 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl652,308,364 - 52,385,942 (+)EnsemblGRCr8
mRatBN7.2646,580,749 - 46,658,345 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl646,580,761 - 46,658,345 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx646,885,655 - 46,963,375 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0647,200,514 - 47,278,235 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0646,635,789 - 46,713,515 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0648,866,496 - 48,982,368 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl648,866,601 - 48,980,340 (+)Ensemblrn6Rnor6.0
Rnor_5.0657,551,559 - 57,663,427 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4647,878,710 - 47,914,112 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera645,788,867 - 45,866,653 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
carnosic acid  (ISO)
cerium trichloride  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
ciglitazone  (EXP)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dimethyl sulfoxide  (EXP)
dioxygen  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fluoranthene  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
furan  (EXP)
genistein  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
ivermectin  (ISO)
lanthanum trichloride  (ISO)
lucanthone  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methyl methanesulfonate  (ISO)
mifepristone  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodiethylamine  (EXP)
Nutlin-3  (ISO)
oxaliplatin  (EXP,ISO)
paraquat  (ISO)
perfluorooctanoic acid  (EXP)
potassium chromate  (ISO)
propanal  (ISO)
resveratrol  (EXP)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18929642   PMID:19590037   PMID:21292788   PMID:22842973   PMID:23533145   PMID:23979707   PMID:24006456   PMID:24021280   PMID:27651140   PMID:29186367   PMID:31216444   PMID:36029851  


Genomics

Comparative Map Data
Pxdn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8652,308,347 - 52,385,943 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl652,308,364 - 52,385,942 (+)EnsemblGRCr8
mRatBN7.2646,580,749 - 46,658,345 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl646,580,761 - 46,658,345 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx646,885,655 - 46,963,375 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0647,200,514 - 47,278,235 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0646,635,789 - 46,713,515 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0648,866,496 - 48,982,368 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl648,866,601 - 48,980,340 (+)Ensemblrn6Rnor6.0
Rnor_5.0657,551,559 - 57,663,427 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4647,878,710 - 47,914,112 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera645,788,867 - 45,866,653 (+)NCBICelera
Cytogenetic Map6q16NCBI
PXDN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3821,631,887 - 1,744,901 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl21,631,887 - 1,744,852 (-)Ensemblhg38GRCh38
GRCh3721,635,659 - 1,748,287 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3621,614,666 - 1,727,298 (-)NCBIBuild 36Build 36hg18NCBI36
Celera21,683,129 - 1,795,627 (-)NCBICelera
Cytogenetic Map2p25.3NCBI
HuRef21,647,904 - 1,732,959 (-)NCBIHuRef
HuRef21,620,535 - 1,643,248 (-)NCBIHuRef
CHM1_121,634,784 - 1,746,414 (-)NCBICHM1_1
T2T-CHM13v2.021,639,438 - 1,752,655 (-)NCBIT2T-CHM13v2.0
Pxdn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391229,986,641 - 30,067,657 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1229,987,607 - 30,067,657 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381229,936,642 - 30,017,658 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1229,937,608 - 30,017,658 (+)Ensemblmm10GRCm38
MGSCv371230,622,901 - 30,702,523 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361230,524,088 - 30,601,911 (+)NCBIMGSCv36mm8
Celera1231,402,408 - 31,481,125 (+)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.0NCBI
Pxdn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554874,867,427 - 4,936,522 (+)Ensembl
ChiLan1.0NW_0049554874,867,427 - 4,936,454 (+)NCBIChiLan1.0ChiLan1.0
PXDN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212124,835,483 - 124,950,905 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A124,839,523 - 124,954,891 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A1,584,901 - 1,699,675 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A1,582,193 - 1,692,033 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A1,582,193 - 1,692,033 (-)EnsemblpanPan2panpan1.1
PXDN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.117834,625 - 891,551 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl17836,434 - 875,117 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha17820,928 - 893,012 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.017891,462 - 963,316 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl17891,465 - 963,674 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.117815,290 - 886,751 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.017835,515 - 907,091 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.017835,194 - 908,255 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pxdn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629245,707,461 - 45,788,503 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936532462,429 - 543,555 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936532462,507 - 543,549 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PXDN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3132,306,447 - 132,362,841 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13132,306,288 - 132,362,853 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23141,717,174 - 141,773,576 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PXDN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114105,936,992 - 106,060,582 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14105,937,198 - 106,060,584 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660455,934,694 - 6,046,338 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pxdn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248466,259,765 - 6,331,100 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248466,259,807 - 6,329,849 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pxdn
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1743,374,885 - 43,452,944 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pxdn
516 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:45
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000006122
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 158 91 90 59 80 59 6 344 180 11 137 81 92 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000077321   ⟹   ENSRNOP00000075396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl652,308,364 - 52,385,942 (+)Ensembl
mRatBN7.2 Ensembl646,580,773 - 46,658,345 (+)Ensembl
Rnor_6.0 Ensembl648,866,601 - 48,970,802 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079891   ⟹   ENSRNOP00000069815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl652,308,365 - 52,385,942 (+)Ensembl
mRatBN7.2 Ensembl646,580,773 - 46,658,345 (+)Ensembl
Rnor_6.0 Ensembl648,866,625 - 48,980,340 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104842   ⟹   ENSRNOP00000082586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl652,308,364 - 52,354,587 (+)Ensembl
mRatBN7.2 Ensembl646,580,761 - 46,626,986 (+)Ensembl
RefSeq Acc Id: NM_001271261   ⟹   NP_001258190
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8652,308,374 - 52,385,943 (+)NCBI
mRatBN7.2646,580,773 - 46,658,345 (+)NCBI
Rnor_6.0648,866,515 - 48,982,368 (+)NCBI
Rnor_5.0657,551,559 - 57,663,427 (+)NCBI
Celera645,788,867 - 45,866,653 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112793   ⟹   XP_038968721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8652,308,347 - 52,385,938 (+)NCBI
mRatBN7.2646,580,749 - 46,658,345 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001258190 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968721 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK30128 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069815
  ENSRNOP00000069815.2
  ENSRNOP00000075396
  ENSRNOP00000075396.2
  ENSRNOP00000082586.1
RefSeq Acc Id: NP_001258190   ⟸   NM_001271261
- Peptide Label: precursor
- UniProtKB: A0A0G2JWB6 (UniProtKB/TrEMBL),   A6HB27 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069815   ⟸   ENSRNOT00000079891
Ensembl Acc Id: ENSRNOP00000075396   ⟸   ENSRNOT00000077321
RefSeq Acc Id: XP_038968721   ⟸   XM_039112793
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KAH2 (UniProtKB/TrEMBL),   A6HB27 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082586   ⟸   ENSRNOT00000104842
Protein Domains
Ig-like   VWFC

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694540
Promoter ID:EPDNEW_R5061
Type:initiation region
Name:Pxdn_1
Description:peroxidasin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0648,866,541 - 48,866,601EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560694 AgrOrtholog
BioCyc Gene G2FUF-37938 BioCyc
Ensembl Genes ENSRNOG00000060614 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077321 ENTREZGENE
  ENSRNOT00000077321.3 UniProtKB/TrEMBL
  ENSRNOT00000079891 ENTREZGENE
  ENSRNOT00000079891.3 UniProtKB/TrEMBL
  ENSRNOT00000104842.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.640.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  6.20.200.20 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Haem_peroxidase UniProtKB/TrEMBL
  Haem_peroxidase_animal_subgr UniProtKB/TrEMBL
  Haem_peroxidase_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_TM_domain-containing UniProtKB/TrEMBL
  Peroxidasin UniProtKB/TrEMBL
  Peroxidasin_Ig-like3 UniProtKB/TrEMBL
  Peroxidasin_peroxidase UniProtKB/TrEMBL
  VWF_C UniProtKB/TrEMBL
KEGG Report rno:554172 UniProtKB/TrEMBL
NCBI Gene 554172 ENTREZGENE
PANTHER ANTIGEN BSP, PUTATIVE-RELATED UniProtKB/TrEMBL
  CHAOPTIN-RELATED UniProtKB/TrEMBL
  OXIDASE/PEROXIDASE UniProtKB/TrEMBL
  PTHR11475:SF75 UniProtKB/TrEMBL
Pfam An_peroxidase UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  LRR_1 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
PhenoGen Pxdn PhenoGen
PRINTS ANPEROXIDASE UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
  PEROXIDASE_3 UniProtKB/TrEMBL
  VWFC_1 UniProtKB/TrEMBL
  VWFC_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000060614 RatGTEx
SMART IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
Superfamily-SCOP FnI-like domain UniProtKB/TrEMBL
  L domain-like UniProtKB/TrEMBL
  SSF48113 UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2JWB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KAH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZV72_RAT UniProtKB/TrEMBL
  A6HB27 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-13 Pxdn  peroxidasin  LOC314016  similar to mKIAA0230 protein  Data merged from RGD:1598541 737654 APPROVED
2014-12-29 Pxdn  peroxidasin  Pxdn  peroxidasin homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Pxdn  peroxidasin homolog (Drosophila)  Perc64  PE responsive protein c64  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-12-03 LOC314016  similar to mKIAA0230 protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-02-09 Perc64  PE responsive protein c64      Symbol and Name status set to provisional 70820 PROVISIONAL