C1d (C1D nuclear receptor corepressor) - Rat Genome Database

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Gene: C1d (C1D nuclear receptor corepressor) Rattus norvegicus
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Symbol: C1d
Name: C1D nuclear receptor corepressor
RGD ID: 1560600
Description: Predicted to enable several functions, including DNA binding activity; nuclear receptor binding activity; and transcription corepressor activity. Predicted to be involved in maturation of 5.8S rRNA and regulation of gene expression. Predicted to act upstream of or within negative regulation of DNA-templated transcription. Predicted to be located in cytoplasm and nucleus. Predicted to be part of exosome (RNase complex) and transcription repressor complex. Predicted to be active in nucleolus. Orthologous to human C1D (C1D nuclear receptor corepressor); PARTICIPATES IN ribosome biogenesis pathway; RNA degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C1D nuclear receptor co-repressor; LOC289810; MGC188504; nuclear DNA binding protein; nuclear DNA binding protein, pseudogene 1; nuclear nucleic acid-binding protein C1D; rCG23324; RGD1560600; similar to small unique nuclear receptor co-repressor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81495,862,550 - 95,874,796 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1495,861,978 - 95,874,796 (+)EnsemblGRCr8
mRatBN7.21491,660,951 - 91,673,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1491,660,989 - 91,672,852 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1495,968,166 - 95,980,375 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01497,212,496 - 97,224,705 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01493,677,566 - 93,689,775 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014100,415,645 - 100,427,878 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14100,415,668 - 100,427,260 (+)Ensemblrn6Rnor6.0
Rnor_5.014100,111,604 - 100,124,172 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41498,153,633 - 98,166,585 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1490,706,936 - 90,719,163 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. An overview of pre-ribosomal RNA processing in eukaryotes. Henras AK, etal., Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):225-42. doi: 10.1002/wrna.1269. Epub 2014 Oct 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9405624   PMID:9469821   PMID:12477932   PMID:17412707  


Genomics

Comparative Map Data
C1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81495,862,550 - 95,874,796 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1495,861,978 - 95,874,796 (+)EnsemblGRCr8
mRatBN7.21491,660,951 - 91,673,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1491,660,989 - 91,672,852 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1495,968,166 - 95,980,375 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01497,212,496 - 97,224,705 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01493,677,566 - 93,689,775 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014100,415,645 - 100,427,878 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14100,415,668 - 100,427,260 (+)Ensemblrn6Rnor6.0
Rnor_5.014100,111,604 - 100,124,172 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41498,153,633 - 98,166,585 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1490,706,936 - 90,719,163 (+)NCBICelera
Cytogenetic Map14q22NCBI
C1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38268,041,130 - 68,063,004 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl268,041,130 - 68,110,948 (-)Ensemblhg38GRCh38
GRCh37268,268,262 - 68,290,136 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36268,122,840 - 68,143,634 (-)NCBIBuild 36Build 36hg18NCBI36
Celera268,118,951 - 68,139,778 (-)NCBICelera
Cytogenetic Map2p14NCBI
HuRef268,006,516 - 68,027,346 (-)NCBIHuRef
CHM1_1268,200,196 - 68,221,015 (-)NCBICHM1_1
T2T-CHM13v2.0268,051,683 - 68,073,563 (-)NCBIT2T-CHM13v2.0
C1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391117,207,547 - 17,219,176 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1117,207,579 - 17,219,176 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381117,257,547 - 17,269,176 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1117,257,579 - 17,269,176 (+)Ensemblmm10GRCm38
MGSCv371117,157,621 - 17,169,179 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361117,157,621 - 17,169,179 (+)NCBIMGSCv36mm8
Celera1117,632,025 - 17,643,583 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.89NCBI
C1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542416,786,397 - 16,802,872 (+)Ensembl
ChiLan1.0NW_00495542416,787,094 - 16,801,600 (+)NCBIChiLan1.0ChiLan1.0
C1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21258,341,552 - 58,362,425 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A58,345,500 - 58,367,398 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A68,094,315 - 68,115,176 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A69,218,972 - 69,239,781 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A69,218,972 - 69,240,261 (-)EnsemblpanPan2panpan1.1
C1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11067,160,168 - 67,165,737 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1067,161,469 - 67,165,741 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1067,051,418 - 67,070,335 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01068,179,369 - 68,198,391 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1068,177,992 - 68,198,852 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11067,863,984 - 67,882,959 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01068,161,261 - 68,180,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01068,457,170 - 68,476,182 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
C1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629216,037,206 - 16,053,613 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649112,515,854 - 12,534,091 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649112,517,679 - 12,534,052 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl374,136,624 - 74,153,747 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1374,133,665 - 74,153,756 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2377,665,599 - 77,685,688 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11439,019,972 - 39,043,109 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1439,019,588 - 39,044,032 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604572,896,821 - 72,917,353 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247625,242,843 - 5,256,130 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
C1d
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11185,718,079 - 85,727,722 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C1d
80 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:630
Count of miRNA genes:293
Interacting mature miRNAs:399
Transcripts:ENSRNOT00000008057
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)1486271332100078267Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat

Markers in Region
PMC24996P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26121,935,028 - 121,935,175 (+)MAPPERmRatBN7.2
mRatBN7.21491,666,548 - 91,666,686 (-)MAPPERmRatBN7.2
Rnor_6.06126,673,062 - 126,673,208NCBIRnor6.0
Rnor_5.06135,879,092 - 135,879,238UniSTSRnor5.0
RGSC_v3.46127,068,085 - 127,068,231UniSTSRGSC3.4
Celera6119,421,921 - 119,422,067UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map14q22UniSTS
RH132429  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21491,670,956 - 91,671,152 (+)MAPPERmRatBN7.2
Rnor_6.014100,425,658 - 100,425,853NCBIRnor6.0
Rnor_5.014100,113,629 - 100,113,824UniSTSRnor5.0
RGSC_v3.41498,164,365 - 98,164,560UniSTSRGSC3.4
Celera1490,716,943 - 90,717,138UniSTS
RH 3.4 Map14693.3UniSTS
Cytogenetic Map14q22UniSTS
X95591  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21491,670,652 - 91,670,836 (-)MAPPERmRatBN7.2
mRatBN7.21491,670,652 - 91,670,836 (+)MAPPERmRatBN7.2
mRatBN7.26121,934,495 - 121,934,678 (+)MAPPERmRatBN7.2
Rnor_6.06126,672,529 - 126,672,711NCBIRnor6.0
Rnor_6.014100,425,354 - 100,425,537NCBIRnor6.0
Rnor_5.06135,878,559 - 135,878,741UniSTSRnor5.0
Rnor_5.014100,113,945 - 100,114,128UniSTSRnor5.0
RGSC_v3.46127,067,552 - 127,067,734UniSTSRGSC3.4
RGSC_v3.41498,164,061 - 98,164,244UniSTSRGSC3.4
Celera1490,716,639 - 90,716,822UniSTS
Celera6119,421,388 - 119,421,570UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map14q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000008057   ⟹   ENSRNOP00000008057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1495,862,104 - 95,874,796 (+)Ensembl
mRatBN7.2 Ensembl1491,660,989 - 91,672,852 (+)Ensembl
Rnor_6.0 Ensembl14100,415,668 - 100,427,260 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl14100,420,484 - 100,422,597 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096935   ⟹   ENSRNOP00000077143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1495,862,598 - 95,872,805 (+)Ensembl
mRatBN7.2 Ensembl1491,661,008 - 91,671,175 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156893   ⟹   ENSRNOP00000104125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1495,861,978 - 95,874,796 (+)Ensembl
RefSeq Acc Id: NM_001106021   ⟹   NP_001099491
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,862,570 - 95,874,796 (+)NCBI
mRatBN7.21491,660,951 - 91,673,177 (+)NCBI
Rnor_6.014100,415,645 - 100,427,878 (+)NCBI
Rnor_5.014100,111,604 - 100,124,172 (-)NCBI
RGSC_v3.41498,153,633 - 98,166,585 (+)RGD
Celera1490,706,936 - 90,719,163 (+)RGD
Sequence:
RefSeq Acc Id: XM_006251516   ⟹   XP_006251578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,862,586 - 95,872,806 (+)NCBI
mRatBN7.21491,660,973 - 91,671,192 (+)NCBI
Rnor_6.014100,415,655 - 100,425,893 (+)NCBI
Rnor_5.014100,111,604 - 100,124,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599127   ⟹   XP_017454616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,862,570 - 95,872,806 (+)NCBI
mRatBN7.21491,665,278 - 91,671,192 (+)NCBI
Rnor_6.014100,417,822 - 100,425,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091765   ⟹   XP_038947693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,865,207 - 95,872,806 (+)NCBI
mRatBN7.21491,662,658 - 91,671,192 (+)NCBI
RefSeq Acc Id: XM_063272980   ⟹   XP_063129050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,862,671 - 95,872,806 (+)NCBI
RefSeq Acc Id: XM_063272981   ⟹   XP_063129051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,862,650 - 95,872,806 (+)NCBI
RefSeq Acc Id: XM_063272982   ⟹   XP_063129052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,865,207 - 95,872,806 (+)NCBI
RefSeq Acc Id: XM_063272983   ⟹   XP_063129053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,862,583 - 95,872,200 (+)NCBI
RefSeq Acc Id: XM_063272984   ⟹   XP_063129054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,862,550 - 95,872,806 (+)NCBI
RefSeq Acc Id: NP_001099491   ⟸   NM_001106021
- UniProtKB: B5DEI6 (UniProtKB/TrEMBL),   A6JPZ6 (UniProtKB/TrEMBL),   F7F7W2 (UniProtKB/TrEMBL),   A0A8I5Y0T0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251578   ⟸   XM_006251516
- Peptide Label: isoform X1
- UniProtKB: B5DEI6 (UniProtKB/TrEMBL),   A6JPZ6 (UniProtKB/TrEMBL),   F7F7W2 (UniProtKB/TrEMBL),   A0A8I5Y0T0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454616   ⟸   XM_017599127
- Peptide Label: isoform X1
- UniProtKB: B5DEI6 (UniProtKB/TrEMBL),   A6JPZ6 (UniProtKB/TrEMBL),   F7F7W2 (UniProtKB/TrEMBL),   A0A8I5Y0T0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008057   ⟸   ENSRNOT00000008057
RefSeq Acc Id: XP_038947693   ⟸   XM_039091765
- Peptide Label: isoform X1
- UniProtKB: B5DEI6 (UniProtKB/TrEMBL),   A6JPZ6 (UniProtKB/TrEMBL),   F7F7W2 (UniProtKB/TrEMBL),   A0A8I5Y0T0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077143   ⟸   ENSRNOT00000096935
RefSeq Acc Id: XP_063129054   ⟸   XM_063272984
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129053   ⟸   XM_063272983
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129051   ⟸   XM_063272981
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y0T0 (UniProtKB/TrEMBL),   A6JPZ6 (UniProtKB/TrEMBL),   B5DEI6 (UniProtKB/TrEMBL),   F7F7W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129050   ⟸   XM_063272980
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y0T0 (UniProtKB/TrEMBL),   A6JPZ6 (UniProtKB/TrEMBL),   B5DEI6 (UniProtKB/TrEMBL),   F7F7W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129052   ⟸   XM_063272982
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y0T0 (UniProtKB/TrEMBL),   A6JPZ6 (UniProtKB/TrEMBL),   B5DEI6 (UniProtKB/TrEMBL),   F7F7W2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104125   ⟸   ENSRNOT00000156893

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEI6-F1-model_v2 AlphaFold B5DEI6 1-141 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699505
Promoter ID:EPDNEW_R10028
Type:initiation region
Name:C1d_1
Description:C1D nuclear receptor co-repressor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.014100,415,683 - 100,415,743EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560600 AgrOrtholog
BioCyc Gene G2FUF-14928 BioCyc
Ensembl Genes ENSRNOG00000005982 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008057 ENTREZGENE
  ENSRNOT00000008057.8 UniProtKB/TrEMBL
  ENSRNOT00000096935 ENTREZGENE
  ENSRNOT00000096935.2 UniProtKB/TrEMBL
  ENSRNOT00000156893.1 UniProtKB/TrEMBL
InterPro Exosome-assoc_fac/DNA_repair UniProtKB/TrEMBL
  Sas10/Utp3/C1D UniProtKB/TrEMBL
KEGG Report rno:289810 UniProtKB/TrEMBL
NCBI Gene 289810 ENTREZGENE
PANTHER C1D UniProtKB/TrEMBL
  NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D UniProtKB/TrEMBL
Pfam Sas10_Utp3 UniProtKB/TrEMBL
PhenoGen C1d PhenoGen
RatGTEx ENSRNOG00000005982 RatGTEx
UniProt A0A8I5Y0T0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LQL4_RAT UniProtKB/TrEMBL
  A6JPZ6 ENTREZGENE, UniProtKB/TrEMBL
  B5DEI6 ENTREZGENE
  F7F7W2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B5DEI6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-05 C1d  C1D nuclear receptor corepressor  C1d  C1D nuclear receptor co-repressor  Name changed 629549 APPROVED
2008-09-04 C1d  nuclear DNA binding protein  RGD1560600  similar to small unique nuclear receptor co-repressor   Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560600  similar to small unique nuclear receptor co-repressor   RGD1560600_predicted  similar to small unique nuclear receptor co-repressor (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560600_predicted  similar to small unique nuclear receptor co-repressor (predicted)  LOC289810  similar to small unique nuclear receptor co-repressor  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC289810  similar to small unique nuclear receptor co-repressor      Symbol and Name status set to provisional 70820 PROVISIONAL