Usp9x (ubiquitin specific peptidase 9, X-linked) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Usp9x (ubiquitin specific peptidase 9, X-linked) Rattus norvegicus
Analyze
Symbol: Usp9x
Name: ubiquitin specific peptidase 9, X-linked
RGD ID: 1560056
Description: Predicted to enable several functions, including co-SMAD binding activity; deubiquitinase activity; and ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including DNA alkylation repair; protein deubiquitination; and transforming growth factor beta receptor superfamily signaling pathway. Predicted to act upstream of or within several processes, including cytosolic ciliogenesis; negative regulation of cilium assembly; and nervous system development. Predicted to be located in apical part of cell; cilium; and growth cone. Predicted to be active in several cellular components, including centrosome; cytosol; and postsynapse. Human ortholog(s) of this gene implicated in female-restricted syndromic X-linked intellectual disability 99 and non-syndromic X-linked intellectual disability 99. Orthologous to human USP9X (ubiquitin specific peptidase 9 X-linked); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363445; probable ubiquitin carboxyl-terminal hydrolase FAF-X; RGD1560056; similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila); ubiquitin specific peptidase 9, X chromosome
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,261,633 - 12,399,780 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX12,261,633 - 12,369,491 (-)EnsemblGRCr8
mRatBN7.2X9,588,825 - 9,726,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX9,588,825 - 9,696,711 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX9,772,936 - 9,880,483 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,270,083 - 13,377,627 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X9,539,867 - 9,647,608 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X10,510,033 - 10,660,555 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,510,033 - 10,630,297 (-)Ensemblrn6Rnor6.0
Rnor_5.0X11,308,415 - 11,458,704 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X21,606,330 - 21,718,042 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX10,119,391 - 10,226,802 (-)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
aconitine  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorohydrocarbon  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
fenofibrate  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furfural  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methylmercury chloride  (EXP,ISO)
methylparaben  (ISO)
miconazole  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methylformamide  (ISO)
nickel dichloride  (EXP)
nickel subsulfide  (EXP)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phlorizin  (ISO)
potassium chromate  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
succimer  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical part of cell  (ISO)
centrosome  (IEA,ISO)
cilium  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytosol  (IBA,IEA,ISO)
growth cone  (IEA,ISO)
nucleus  (IBA)
postsynapse  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10704870   PMID:14657369   PMID:15509704   PMID:17728463   PMID:18254724   PMID:18410486   PMID:19135894   PMID:19946888   PMID:20305814   PMID:21173155   PMID:22065755   PMID:22371489  
PMID:22871113   PMID:23146885   PMID:23861879   PMID:24607389   PMID:25763846   PMID:25931508   PMID:25944111   PMID:29626158   PMID:38874156  


Genomics

Comparative Map Data
Usp9x
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,261,633 - 12,399,780 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX12,261,633 - 12,369,491 (-)EnsemblGRCr8
mRatBN7.2X9,588,825 - 9,726,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX9,588,825 - 9,696,711 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX9,772,936 - 9,880,483 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,270,083 - 13,377,627 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X9,539,867 - 9,647,608 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X10,510,033 - 10,660,555 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,510,033 - 10,630,297 (-)Ensemblrn6Rnor6.0
Rnor_5.0X11,308,415 - 11,458,704 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X21,606,330 - 21,718,042 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX10,119,391 - 10,226,802 (-)NCBICelera
Cytogenetic MapXq12NCBI
USP9X
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X41,085,445 - 41,236,579 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX41,085,431 - 41,236,579 (+)Ensemblhg38GRCh38
GRCh37X40,944,698 - 41,095,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X40,829,832 - 40,980,776 (+)NCBIBuild 36Build 36hg18NCBI36
CeleraX45,085,646 - 45,236,596 (+)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX38,676,295 - 38,826,441 (+)NCBIHuRef
CHM1_1X40,977,600 - 41,128,503 (+)NCBICHM1_1
T2T-CHM13v2.0X40,487,470 - 40,638,605 (+)NCBIT2T-CHM13v2.0
Usp9x
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X12,937,221 - 13,039,567 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX12,937,737 - 13,039,567 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X13,070,982 - 13,173,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,071,498 - 13,173,328 (+)Ensemblmm10GRCm38
MGSCv37X12,648,624 - 12,750,454 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X12,228,496 - 12,328,745 (+)NCBIMGSCv36mm8
CeleraX10,768,972 - 10,871,748 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX7.95NCBI
Usp9x
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555651,479,040 - 1,602,070 (-)Ensembl
ChiLan1.0NW_0049555651,479,040 - 1,602,070 (-)NCBIChiLan1.0ChiLan1.0
USP9X
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X42,734,028 - 42,881,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X42,737,410 - 42,887,035 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,535,543 - 33,683,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X41,231,814 - 41,380,569 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX41,232,041 - 41,379,910 (+)EnsemblpanPan2panpan1.1
USP9X
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,522,873 - 35,676,086 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX22,845,661 - 23,024,786 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,571,563 - 35,712,343 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1X35,624,905 - 35,803,984 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X35,597,545 - 35,776,521 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X35,640,469 - 35,819,595 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Usp9x
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X27,780,903 - 27,894,664 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,649,842 - 7,735,382 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,649,808 - 7,732,731 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP9X
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX36,760,865 - 36,885,250 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X36,736,049 - 36,888,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
USP9X
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,255,414 - 38,402,855 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblY489,840 - 626,098 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
ChlSab1.1 EnsemblX38,256,008 - 38,403,323 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660763,448,010 - 3,595,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp9x
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476214,405,560 - 14,527,639 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476214,403,361 - 14,527,854 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Usp9x
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X8,198,472 - 8,335,190 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Usp9x
720 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1123
Count of miRNA genes:360
Interacting mature miRNAs:492
Transcripts:ENSRNOT00000048980
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149314046933Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat

Markers in Region
RH127557  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X12,261,810 - 12,262,010 (+)Marker Load Pipeline
mRatBN7.2X9,589,002 - 9,589,202 (+)MAPPERmRatBN7.2
Rnor_6.0X10,510,211 - 10,510,410NCBIRnor6.0
Rnor_6.0X10,523,776 - 10,523,975NCBIRnor6.0
Rnor_5.0X11,322,158 - 11,322,357UniSTSRnor5.0
Rnor_5.0X11,308,593 - 11,308,792UniSTSRnor5.0
RGSC_v3.4X21,606,508 - 21,606,707UniSTSRGSC3.4
CeleraX10,119,569 - 10,119,768UniSTS
Cytogenetic MapXq13UniSTS
RH125670  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X12,265,623 - 12,265,854 (+)Marker Load Pipeline
mRatBN7.2X9,592,814 - 9,593,046 (+)MAPPERmRatBN7.2
Rnor_6.0X10,526,220 - 10,526,451NCBIRnor6.0
Rnor_5.0X11,324,602 - 11,324,833UniSTSRnor5.0
RGSC_v3.4X21,610,320 - 21,610,551UniSTSRGSC3.4
CeleraX10,123,381 - 10,123,612UniSTS
Cytogenetic MapXq13UniSTS
RH142260  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,591,801 - 9,591,955 (+)MAPPERmRatBN7.2
Rnor_6.0X10,513,010 - 10,513,163NCBIRnor6.0
Rnor_5.0X11,311,392 - 11,311,545UniSTSRnor5.0
RGSC_v3.4X21,609,307 - 21,609,460UniSTSRGSC3.4
CeleraX10,122,368 - 10,122,521UniSTS
RH 3.4 MapX21.6UniSTS
Cytogenetic MapXq13UniSTS
BF396338  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,640,927 - 9,641,075 (+)MAPPERmRatBN7.2
Rnor_6.0X10,573,812 - 10,573,959NCBIRnor6.0
Rnor_5.0X11,372,194 - 11,372,341UniSTSRnor5.0
RGSC_v3.4X21,660,103 - 21,660,250UniSTSRGSC3.4
CeleraX10,171,446 - 10,171,593UniSTS
RH 3.4 MapX16.2UniSTS
Cytogenetic MapXq13UniSTS
RH141703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,591,548 - 9,591,751 (+)MAPPERmRatBN7.2
Rnor_6.0X10,512,757 - 10,512,959NCBIRnor6.0
Rnor_5.0X11,311,139 - 11,311,341UniSTSRnor5.0
RGSC_v3.4X21,609,054 - 21,609,256UniSTSRGSC3.4
CeleraX10,122,115 - 10,122,317UniSTS
RH 3.4 MapX23.9UniSTS
Cytogenetic MapXq13UniSTS
BG371737  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 MapX19.2UniSTS
Cytogenetic MapXq13UniSTS
D20S998  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,592,789 - 9,592,908 (+)MAPPERmRatBN7.2
Rnor_6.0X10,526,195 - 10,526,313NCBIRnor6.0
Rnor_5.0X11,324,577 - 11,324,695UniSTSRnor5.0
RGSC_v3.4X21,610,295 - 21,610,413UniSTSRGSC3.4
CeleraX10,123,356 - 10,123,474UniSTS
Cytogenetic MapXq13UniSTS
RH125324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,590,527 - 9,590,706 (+)MAPPERmRatBN7.2
Rnor_6.0X10,525,301 - 10,525,479NCBIRnor6.0
Rnor_6.0X10,511,736 - 10,511,914NCBIRnor6.0
Rnor_5.0X11,310,118 - 11,310,296UniSTSRnor5.0
Rnor_5.0X11,323,683 - 11,323,861UniSTSRnor5.0
RGSC_v3.4X21,608,033 - 21,608,211UniSTSRGSC3.4
CeleraX10,121,094 - 10,121,272UniSTS
Cytogenetic MapXq13UniSTS
USP9X_3261  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4X21,609,885 - 21,610,490UniSTSRGSC3.4
CeleraX10,122,946 - 10,123,551UniSTS
Cytogenetic MapXq13UniSTS
px-12d6  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X12,261,992 - 12,262,106 (+)Marker Load Pipeline
mRatBN7.2X9,589,184 - 9,589,297 (+)MAPPERmRatBN7.2
Rnor_6.0X10,510,393 - 10,510,505NCBIRnor6.0
Rnor_6.0X10,523,958 - 10,524,070NCBIRnor6.0
Rnor_5.0X11,322,340 - 11,322,452UniSTSRnor5.0
Rnor_5.0X11,308,775 - 11,308,887UniSTSRnor5.0
RGSC_v3.4X21,606,690 - 21,606,802UniSTSRGSC3.4
CeleraX10,119,751 - 10,119,863UniSTS
Cytogenetic MapXq13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001135923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000048980   ⟹   ENSRNOP00000043441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX9,590,589 - 9,696,711 (-)Ensembl
Rnor_6.0 EnsemblX10,511,797 - 10,630,297 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080651   ⟹   ENSRNOP00000072190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX12,261,633 - 12,369,491 (-)Ensembl
mRatBN7.2 EnsemblX9,588,825 - 9,696,695 (-)Ensembl
Rnor_6.0 EnsemblX10,510,033 - 10,630,281 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093067   ⟹   ENSRNOP00000075990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX12,267,045 - 12,369,491 (-)Ensembl
mRatBN7.2 EnsemblX9,594,237 - 9,696,711 (-)Ensembl
RefSeq Acc Id: NM_001135923   ⟹   NP_001129395
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,633 - 12,369,491 (-)NCBI
mRatBN7.2X9,588,825 - 9,696,695 (-)NCBI
Rnor_6.0X10,510,033 - 10,630,281 (-)NCBI
Rnor_5.0X11,308,415 - 11,458,704 (-)NCBI
RGSC_v3.4X21,606,330 - 21,718,042 (-)RGD
CeleraX10,119,391 - 10,226,786 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099859   ⟹   XP_038955787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,369,516 (-)NCBI
mRatBN7.2X9,588,943 - 9,696,011 (-)NCBI
RefSeq Acc Id: XM_039099860   ⟹   XP_038955788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
mRatBN7.2X9,588,943 - 9,726,993 (-)NCBI
RefSeq Acc Id: XM_039099861   ⟹   XP_038955789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
mRatBN7.2X9,588,943 - 9,726,993 (-)NCBI
RefSeq Acc Id: XM_039099862   ⟹   XP_038955790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,368,531 (-)NCBI
mRatBN7.2X9,588,943 - 9,695,584 (-)NCBI
RefSeq Acc Id: XM_039099863   ⟹   XP_038955791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,369,516 (-)NCBI
mRatBN7.2X9,588,943 - 9,696,011 (-)NCBI
RefSeq Acc Id: XM_039099864   ⟹   XP_038955792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,369,516 (-)NCBI
mRatBN7.2X9,588,943 - 9,696,011 (-)NCBI
RefSeq Acc Id: XM_039099865   ⟹   XP_038955793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,369,516 (-)NCBI
mRatBN7.2X9,588,943 - 9,696,011 (-)NCBI
RefSeq Acc Id: XM_039099867   ⟹   XP_038955795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,346,895 (-)NCBI
mRatBN7.2X9,588,943 - 9,674,098 (-)NCBI
RefSeq Acc Id: XM_063280114   ⟹   XP_063136184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
RefSeq Acc Id: XM_063280115   ⟹   XP_063136185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
RefSeq Acc Id: XM_063280116   ⟹   XP_063136186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
RefSeq Acc Id: NP_001129395   ⟸   NM_001135923
- Peptide Label: isoform 2
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072190   ⟸   ENSRNOT00000080651
Ensembl Acc Id: ENSRNOP00000043441   ⟸   ENSRNOT00000048980
RefSeq Acc Id: XP_038955789   ⟸   XM_039099861
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955788   ⟸   XM_039099860
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955793   ⟸   XM_039099865
- Peptide Label: isoform X4
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955791   ⟸   XM_039099863
- Peptide Label: isoform X2
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955792   ⟸   XM_039099864
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038955787   ⟸   XM_039099859
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955790   ⟸   XM_039099862
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955795   ⟸   XM_039099867
- Peptide Label: isoform X4
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000075990   ⟸   ENSRNOT00000093067
RefSeq Acc Id: XP_063136186   ⟸   XM_063280116
- Peptide Label: isoform X2
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136185   ⟸   XM_063280115
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136184   ⟸   XM_063280114
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
Protein Domains
USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K2C7-F1-model_v2 AlphaFold A0A0G2K2C7 1-2554 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701707
Promoter ID:EPDNEW_R12231
Type:initiation region
Name:Usp9x_1
Description:ubiquitin specific peptidase 9, X-linked
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X10,630,281 - 10,630,341EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560056 AgrOrtholog
BioCyc Gene G2FUF-3073 BioCyc
Ensembl Genes ENSRNOG00000003261 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080651 ENTREZGENE
  ENSRNOT00000080651.3 UniProtKB/TrEMBL
  ENSRNOT00000093067 ENTREZGENE
  ENSRNOT00000093067.3 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  ARM_UBP34_24_USP9X_Y UniProtKB/TrEMBL
  DUF3517 UniProtKB/TrEMBL
  Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Pept_C19ubi-hydrolase_C_CS UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  UBP24/USP9X/USP9Y_UBL UniProtKB/TrEMBL
  UCH/PAN2 UniProtKB/TrEMBL
NCBI Gene 363445 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAF-X-RELATED UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAF-X-RELATED UniProtKB/TrEMBL
Pfam ARM_UBP24_USP9X-Y UniProtKB/TrEMBL
  DUF3517 UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
  UCH_UBL1 UniProtKB/TrEMBL
PhenoGen Usp9x PhenoGen
PROSITE UCH_2_1 UniProtKB/TrEMBL
  UCH_2_2 UniProtKB/TrEMBL
  UCH_2_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003261 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A0G2K2C7 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GWR2_RAT UniProtKB/TrEMBL
  A6JZY9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC84 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-23 Usp9x  ubiquitin specific peptidase 9, X-linked  Usp9x  ubiquitin specific peptidase 9, X chromosome   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Usp9x  ubiquitin specific peptidase 9, X chromosome   Usp9x_predicted  ubiquitin specific peptidase 9, X chromosome (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Usp9x_predicted  ubiquitin specific peptidase 9, X chromosome (predicted)  RGD1560056_predicted  similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila) (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1560056_predicted  similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila) (predicted)  LOC363445  similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363445  similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila)      Symbol and Name status set to provisional 70820 PROVISIONAL