D20S998 Marker Search Result - Rat Genome Database

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Marker: D20S998

Symbol: D20S998
Previously known as:
RGD ID: 5500290
Expected Size: 119 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,592,789 - 9,592,908 (+)MAPPERmRatBN7.2
Rnor_6.0X10,526,195 - 10,526,313NCBIRnor6.0
Rnor_5.0X11,324,577 - 11,324,695UniSTSRnor5.0
RGSC_v3.4X21,610,295 - 21,610,413UniSTSRGSC3.4
CeleraX10,123,356 - 10,123,474UniSTS
Cytogenetic MapXq13UniSTS
Is Marker For: Genes:   Usp9x  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AACTGGTTCCATCAAGACTG
Reverse Primer AGTGAATAAACTCTCCACTCC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1560056Usp9xubiquitin specific peptidase 9, X-linkedX95888259726993Rat

Nucleotide Sequences
RefSeq Transcripts NM_001135893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001135923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144797211374346Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 363445 UniSTS
UniSTS 154615 UniSTS