Cimip2c (ciliary microtubule inner protein 2C) - Rat Genome Database

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Gene: Cimip2c (ciliary microtubule inner protein 2C) Rattus norvegicus
Analyze
Symbol: Cimip2c
Name: ciliary microtubule inner protein 2C
RGD ID: 1559683
Description: Predicted to be involved in flagellated sperm motility. Predicted to be located in axonemal microtubule. Predicted to be active in axonemal A tubule inner sheath and sperm flagellum. Orthologous to human CIMIP2C (ciliary microtubule inner protein 2C); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Fam166c; family with sequence similarity 166 member C; hypothetical protein LOC500620; LOC500620; RGD1559683; similar to RIKEN cDNA 1700001C02; uncharacterized protein LOC500620; UPF0573 protein C2orf70 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,625,187 - 31,643,500 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl631,625,188 - 31,643,629 (-)EnsemblGRCr8
mRatBN7.2625,905,294 - 25,923,615 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,905,294 - 25,923,615 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx626,197,967 - 26,216,277 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,513,848 - 26,532,158 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,992,822 - 26,011,126 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,305,402 - 27,323,992 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,305,402 - 27,323,992 (-)Ensemblrn6Rnor6.0
Rnor_5.0637,117,774 - 37,136,364 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4625,889,215 - 25,908,084 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera625,383,869 - 25,401,938 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21630459  


Genomics

Comparative Map Data
Cimip2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,625,187 - 31,643,500 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl631,625,188 - 31,643,629 (-)EnsemblGRCr8
mRatBN7.2625,905,294 - 25,923,615 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,905,294 - 25,923,615 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx626,197,967 - 26,216,277 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,513,848 - 26,532,158 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,992,822 - 26,011,126 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,305,402 - 27,323,992 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,305,402 - 27,323,992 (-)Ensemblrn6Rnor6.0
Rnor_5.0637,117,774 - 37,136,364 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4625,889,215 - 25,908,084 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera625,383,869 - 25,401,938 (-)NCBICelera
Cytogenetic Map6q14NCBI
CIMIP2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,562,587 - 26,579,524 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,562,585 - 26,579,532 (+)Ensemblhg38GRCh38
GRCh37226,785,455 - 26,802,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,638,985 - 26,655,899 (+)NCBIBuild 36Build 36hg18NCBI36
Celera226,629,117 - 26,646,026 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,524,922 - 26,541,831 (+)NCBIHuRef
CHM1_1226,715,533 - 26,732,444 (+)NCBICHM1_1
T2T-CHM13v2.0226,601,745 - 26,618,672 (+)NCBIT2T-CHM13v2.0
Cimip2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,623,395 - 30,641,433 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,623,391 - 30,641,432 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38530,466,029 - 30,484,089 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,466,047 - 30,484,088 (+)Ensemblmm10GRCm38
MGSCv37530,768,450 - 30,786,460 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36530,742,658 - 30,760,668 (+)NCBIMGSCv36mm8
Celera527,944,260 - 27,962,270 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.57NCBI
Cimip2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,588,900 - 8,604,337 (+)Ensembl
ChiLan1.0NW_0049554698,588,820 - 8,603,333 (+)NCBIChiLan1.0ChiLan1.0
CIMIP2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,936,109 - 99,956,927 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,940,080 - 99,960,894 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,558,826 - 26,578,005 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,651,265 - 26,668,192 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,651,283 - 26,668,192 (+)EnsemblpanPan2panpan1.1
CIMIP2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,618,642 - 20,633,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,618,329 - 20,633,403 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1720,512,905 - 20,527,668 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01720,940,005 - 20,954,785 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,939,689 - 20,954,785 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,626,951 - 20,641,726 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,638,105 - 20,652,860 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,684,449 - 20,699,207 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cimip2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,927,300 - 64,943,438 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,896,206 - 5,912,182 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,896,206 - 5,912,182 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMIP2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,458,916 - 112,474,437 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13112,458,914 - 112,474,431 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,458,324 - 119,473,737 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIMIP2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,059,408 - 81,077,554 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,057,764 - 81,076,400 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604531,071,037 - 31,089,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimip2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247388,702,652 - 8,716,962 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cimip2c
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1723,598,663 - 23,616,311 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cimip2c
115 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:31
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000013198
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)62228825732981219Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
reproductive system
respiratory system
3 4 2 46 12 22 4 16 4 2 30 22 1 44 38 18

Sequence


Ensembl Acc Id: ENSRNOT00000013198   ⟹   ENSRNOP00000013198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl631,625,188 - 31,643,629 (-)Ensembl
mRatBN7.2 Ensembl625,905,294 - 25,923,615 (-)Ensembl
Rnor_6.0 Ensembl627,305,402 - 27,323,992 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113552   ⟹   ENSRNOP00000091220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl631,625,188 - 31,635,274 (-)Ensembl
mRatBN7.2 Ensembl625,905,294 - 25,912,986 (-)Ensembl
RefSeq Acc Id: NM_001109275   ⟹   NP_001102745
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,625,188 - 31,643,500 (-)NCBI
mRatBN7.2625,905,294 - 25,923,615 (-)NCBI
Rnor_6.0627,305,402 - 27,323,992 (-)NCBI
Rnor_5.0637,117,774 - 37,136,364 (-)NCBI
RGSC_v3.4625,889,215 - 25,908,084 (-)RGD
Celera625,383,869 - 25,401,938 (-)RGD
Sequence:
RefSeq Acc Id: XM_039112708   ⟹   XP_038968636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,625,187 - 31,643,494 (-)NCBI
mRatBN7.2625,905,381 - 25,923,609 (-)NCBI
RefSeq Acc Id: XM_063262287   ⟹   XP_063118357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,627,239 - 31,643,494 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968636 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118357 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM02989 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013198.7
  ENSRNOP00000091220
  ENSRNOP00000091220.2
RefSeq Acc Id: NP_001102745   ⟸   NM_001109275
- UniProtKB: D3ZW52 (UniProtKB/TrEMBL),   A6HAD4 (UniProtKB/TrEMBL),   A0A8I6AF65 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013198   ⟸   ENSRNOT00000013198
RefSeq Acc Id: XP_038968636   ⟸   XM_039112708
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000091220   ⟸   ENSRNOT00000113552
RefSeq Acc Id: XP_063118357   ⟸   XM_063262287
- Peptide Label: isoform X2
Protein Domains
Ciliary microtubule inner protein 2A-C-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694464
Promoter ID:EPDNEW_R4988
Type:multiple initiation site
Name:RGD1559683_1
Description:similar to RIKEN cDNA 1700001C02
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0627,323,976 - 27,324,036EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559683 AgrOrtholog
BioCyc Gene G2FUF-38310 BioCyc
Ensembl Genes ENSRNOG00000009905 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013198.7 UniProtKB/TrEMBL
  ENSRNOT00000113552 ENTREZGENE
  ENSRNOT00000113552.2 UniProtKB/TrEMBL
InterPro CIMIP2C UniProtKB/TrEMBL
  UPF0573/UPF0605 UniProtKB/TrEMBL
KEGG Report rno:500620 UniProtKB/TrEMBL
NCBI Gene 500620 ENTREZGENE
PANTHER PROTEIN FAM166C UniProtKB/TrEMBL
  UPF0573 PROTEIN C2ORF70 UniProtKB/TrEMBL
Pfam DUF2475 UniProtKB/TrEMBL
PhenoGen Cimip2c PhenoGen
RatGTEx ENSRNOG00000009905 RatGTEx
UniProt A0A8I6AF65 ENTREZGENE, UniProtKB/TrEMBL
  A6HAD4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZW52 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Cimip2c  ciliary microtubule inner protein 2C  Fam166c  family with sequence similarity 166 member C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-09-30 Fam166c  family with sequence similarity 166 member C  RGD1559683  similar to RIKEN cDNA 1700001C02  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1559683  similar to RIKEN cDNA 1700001C02   RGD1559683_predicted  similar to RIKEN cDNA 1700001C02 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559683_predicted  similar to RIKEN cDNA 1700001C02 (predicted)  LOC500620  similar to RIKEN cDNA 1700001C02  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500620  similar to RIKEN cDNA 1700001C02      Symbol and Name status set to provisional 70820 PROVISIONAL