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Gene: Ciapin1 (cytokine induced apoptosis inhibitor 1) Rattus norvegicus

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Symbol:

Ciapin1

Name:

cytokine induced apoptosis inhibitor 1

RGD ID:

1549737

Description:

Predicted to enable 2 iron, 2 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within hemopoiesis and negative regulation of apoptotic process. Predicted to be located in nucleolus. Predicted to be active in cytoplasm. Orthologous to human CIAPIN1 (cytokine induced apoptosis inhibitor 1); PARTICIPATES IN cytosolic iron-sulfur cluster protein assembly pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,3-dinitrobenzene; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

anamorsin; cytokine-induced apoptosis inhibitor 1; fe-S cluster assembly protein DRE2 homolog; MGC94686; similar to RIKEN cDNA 2810413N20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CIAPIN1 (cytokine induced apoptosis inhibitor 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ciapin1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ciapin1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CIAPIN1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CIAPIN1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ciapin1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CIAPIN1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CIAPIN1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ciapin1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ciapin1 (cytokine induced apoptosis inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DAD1 (defender against cell death 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CIAPIN1 (cytokine induced apoptosis inhibitor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ciapin1 (cytokine induced apoptosis inhibitor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ciapin1 (cytokine induced apoptosis inhibitor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CIAPIN1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DRE2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DRE2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T20B12.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ciapin1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	10,185,955 - 10,199,120 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	10,182,088 - 10,201,495 (+)	Ensembl				GRCr8
mRatBN7.2	19	10,179,963 - 10,195,511 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	10,180,100 - 10,195,503 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	10,144,184 - 10,157,188 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,911,028 - 10,924,032 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	10,197,976 - 10,210,981 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,596,923 - 10,612,414 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,596,960 - 10,610,049 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	10,591,726 - 10,607,111 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	10,619,171 - 10,632,187 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	10,066,716 - 10,079,509 (+)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (EXP,ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrobenzenesulfonic acid (ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

beauvericin (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

choline (ISO)

clobetasol (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

etoposide (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

inulin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lead(0) (ISO)

methamphetamine (ISO)

microcystin RR (ISO)

nefazodone (EXP)

nimesulide (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP)

phorone (EXP)

pirinixic acid (ISO)

quercetin (ISO)

sodium arsenite (ISO)

thapsigargin (EXP)

thiram (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

hemopoiesis (IEA,ISO)

iron-sulfur cluster assembly (IBA,IEA)

negative regulation of apoptotic process (IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

cytosol (IEA,ISO)

mitochondrial intermembrane space (IEA)

mitochondrion (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

2 iron, 2 sulfur cluster binding (IEA,ISO,ISS)

4 iron, 4 sulfur cluster binding (IEA)

electron transfer activity (IEA)

iron ion binding (ISO)

iron-sulfur cluster binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cytosolic iron-sulfur cluster protein assembly pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery.	Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
3.	Biogenesis of cytosolic and nuclear iron-sulfur proteins and their role in genome stability.	Paul VD and Lill R, Biochim Biophys Acta. 2015 Jun;1853(6):1528-39. doi: 10.1016/j.bbamcr.2014.12.018. Epub 2015 Jan 10.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:14970183	PMID:16957168	PMID:27519415	PMID:29671338	PMID:31432171	PMID:33538533

Genomics

Comparative Map Data

Ciapin1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	10,185,955 - 10,199,120 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	10,182,088 - 10,201,495 (+)	Ensembl				GRCr8
mRatBN7.2	19	10,179,963 - 10,195,511 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	10,180,100 - 10,195,503 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	10,144,184 - 10,157,188 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,911,028 - 10,924,032 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	10,197,976 - 10,210,981 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,596,923 - 10,612,414 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,596,960 - 10,610,049 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	10,591,726 - 10,607,111 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	10,619,171 - 10,632,187 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	10,066,716 - 10,079,509 (+)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

CIAPIN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	57,428,187 - 57,447,385 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	57,428,177 - 57,447,420 (-)	Ensembl			hg38	GRCh38
GRCh37	16	57,462,099 - 57,481,297 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	56,019,587 - 56,038,870 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	56,019,581 - 56,032,341	NCBI
Celera	16	41,962,936 - 41,982,221 (-)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	43,329,733 - 43,349,016 (-)	NCBI		HuRef
CHM1_1	16	58,870,146 - 58,889,429 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	63,223,362 - 63,242,561 (-)	NCBI		T2T-CHM13v2.0

Ciapin1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	95,546,446 - 95,565,454 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	95,546,432 - 95,564,986 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	94,819,818 - 94,838,830 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	94,819,804 - 94,838,358 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	97,343,718 - 97,362,240 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	97,708,947 - 97,727,469 (-)	NCBI		MGSCv36	mm8
Celera	8	99,144,006 - 99,162,184 (-)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	46.86	NCBI

Ciapin1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,065,031 - 15,081,293 (-)	Ensembl
ChiLan1.0	NW_004955433	15,065,031 - 15,081,392 (-)	NCBI	ChiLan1.0	ChiLan1.0

CIAPIN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	66,896,003 - 66,917,703 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	72,816,823 - 72,838,576 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	37,701,773 - 37,723,556 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	56,835,024 - 56,856,502 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	56,835,024 - 56,856,502 (-)	Ensembl			panPan2	panpan1.1
PanPan1.1 Ensembl	15	66,557,163 - 66,558,106 (+)	Ensembl			panPan2	panpan1.1

CIAPIN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,977,592 - 58,992,785 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,977,676 - 58,992,581 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	55,607,027 - 55,622,240 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	59,516,013 - 59,531,188 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	59,516,048 - 59,531,834 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	56,347,304 - 56,362,485 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	57,355,010 - 57,370,223 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	58,248,470 - 58,263,682 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ciapin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	50,086,413 - 50,103,861 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	9,485,145 - 9,503,002 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	9,485,214 - 9,502,619 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIAPIN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	19,356,069 - 19,373,060 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	19,356,065 - 19,373,085 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	17,323,846 - 17,335,336 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIAPIN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	43,360,465 - 43,378,561 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	43,359,399 - 43,378,686 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	32,840,525 - 32,858,606 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ciapin1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	28,630,774 - 28,647,182 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	28,630,662 - 28,647,182 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ciapin1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	1,702,762 - 1,718,423 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ciapin1
70 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	989
Count of miRNA genes:	328
Interacting mature miRNAs:	459
Transcripts:	ENSRNOT00000021769
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31969901	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24694445	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27361636	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

BE102514

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	10,194,005 - 10,194,199 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	10,610,909 - 10,611,102	NCBI	Rnor6.0
Rnor_5.0	19	10,605,606 - 10,605,799	UniSTS	Rnor5.0
RGSC_v3.4	19	10,633,065 - 10,633,258	UniSTS	RGSC3.4
Celera	19	10,080,387 - 10,080,580	UniSTS
RH 3.4 Map	19	100.3	UniSTS
Cytogenetic Map	19	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021769 ⟹ ENSRNOP00000021769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	10,186,052 - 10,201,495 (+)	Ensembl
mRatBN7.2 Ensembl	19	10,180,100 - 10,195,503 (+)	Ensembl
Rnor_6.0 Ensembl	19	10,596,960 - 10,610,049 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116645 ⟹ ENSRNOP00000096214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	10,186,506 - 10,201,495 (+)	Ensembl
mRatBN7.2 Ensembl	19	10,180,508 - 10,195,503 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172702 ⟹ ENSRNOP00000106580

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	10,182,088 - 10,199,127 (+)	Ensembl

RefSeq Acc Id:

NM_001007689 ⟹ NP_001007690

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,186,102 - 10,199,120 (+)	NCBI
mRatBN7.2	19	10,180,109 - 10,193,128 (+)	NCBI
Rnor_6.0	19	10,597,014 - 10,610,031 (+)	NCBI
Rnor_5.0	19	10,591,726 - 10,607,111 (+)	NCBI
RGSC_v3.4	19	10,619,171 - 10,632,187 (+)	RGD
Celera	19	10,066,716 - 10,079,509 (+)	RGD

Sequence:

show sequence

CGCTCGGGGTGTCTCGAGCACCTGACCGGGCTTAACGGCCCTCTTTGAAGCCTTCTCGTCTTCC
GTCCTCTCGCTCCGGTCCCGGCGCCGTCCTTGGTACGCCTGGGAAAGTCAGTGTGAGGGGCCGC
GGCGGCAGGGCCCCTGCACGCGGCGTGCCTGAAGCCGGGACTCGTCTGCCGCCTCTTTCCGCGT
GAAACCCGGAGCTGGCATCGGGACCGCCGGTTTACTCATAGCCGTCGGTGGTGACCTTGAGTCT
CTTCCAGGCACTTGGCGGAAAGCACCAAAGCATTTAGGTCCAGCAGCTCTGCAGGAATGGCCGA
GTTTGGGATCTCCCCTGGCCAGCTTGTGGCAGTGTTCTGTGACAAGTCATCTTCTGAAGAGGCC
CTTAAAAAACTGGTGGGTAGAGTTCAAGGATTAACTGGCAGCGAGGGCCAAGTATTCGTGGAAA
ACATCACCCAGCTGTTGCAGTCTGCCCATAAGGAATCCAGCTTCGATGTCATTCTGTCCGGTAT
AGTCCCAGGAAGCACCTCTCTGCACAGTCCTGAGGCTCTGGCTGACATGGCCCGGATCCTCCGG
CCAGGGGGGTGTCTTTTTCTGAAAGAACCAGTGGAGACAACTGGAGTTAACAATGACAAAATAA
AGACAGCCTCTAAGCTGTGTTCAGCCCTGACTCTTTCTGGCCTTGTGGAAATAAAAGAGTTGCA
GCGGGAGGCCTTAAGCCCTGAGGAGGCGCAGTCCATGCAGGAGCACCTGGGCTACCACAGTGAC
AGCCTGCTCTCAGTCCACGTCACAGGCAAGAAGCCAAACTTTGAAGTGGGTTCTTCTAGCCAGC
TAAAGCTTCTCCACAAGAAGTCGTCTTCAGTGAAGCCTGTTGTGGATCCTGCTACTGCCAAGCT
CTGGACCCTCTCAGCCAATGACATGGAGGATGACAGCATGGATCTCATTGACTCAGATGAGCTG
CTAGATCCAGAAGATTTGAAGAAGCCTGATCCAGCCTCTCTGAAGGCGCCTTCATGTGGGGAAG
GGAAAAAGAGGAAGGCCTGTAAGAACTGCACCTGTGGCCTGGCAGAGGAACTGGAGAAAGAGCA
GTCCAAGGCGCAGAGCTCTCAGCCCAAGTCAGCCTGTGGAAATTGCTACCTGGGAGATGCTTTC
CGATGTGCCAACTGCCCCTACCTTGGGATGCCAGCCTTCAAGCCTGGAGAGCAGGTCCTCCTGA
GCAGTAGCAACCTCCAGGATGCCTAGGAGGAAGCCCAAGCCCACACACCTCCTCCTCCAGCCGA
CTCCTGCCCCTCAGTGCCTGCCAGGCCTCCTCCCATCCCTGGATTCAATCACTCTGAAAACATT
CGCAGGGAGAGGCTTGTAGCAGAGTGAAGCTGCTTGGGGCAGTGGGGTGTGGTGCTGCTATGTC
TTGAAAGACCAAGGTATGAGGGACCTGCCTTCTTAGTGTTAGGAGGAGGAGATGTACCGTAGGA
ACTCTGCTCCTGGTGTTACAGTGCTGACCCTCTCCACCCTTGAGTCTAGACATCCTTGAATATT
TATGCTGAATAAGCTCCAGGTCCACTCATTGATGCTGCCACTTGCTGAACTTCCTCAGTCCGTA
TTACTTGGAGCCATGGGTCAGCTGTAAAAGGGCCTCGGGCACCAAAGAAGTCACTCCCTTAGTT
GTCGTGATCCATCTTGTGTCCTGCCTTTCTCACCTCACCCCATTTTACTGTAGTGTTGTATCTG
TGTCCTGTTGTGATTTCTGTTAAATAGGTATTAAATTTTTGTGTTTCTGTCAAAAAAAAAAAAA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006255106 ⟹ XP_006255168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,186,247 - 10,199,120 (+)	NCBI
mRatBN7.2	19	10,180,050 - 10,195,511 (+)	NCBI
Rnor_6.0	19	10,596,966 - 10,612,414 (+)	NCBI
Rnor_5.0	19	10,591,726 - 10,607,111 (+)	NCBI

Sequence:

show sequence

AAGCCGGTGTCTACCGAGCGTGTTTTCAGGCTCTGAGGAAGGTGAGGACGCTCGGGGTGTCTCG
AGCACCTGACCGGGCTTAACGGCCCTCTTTGAAGCCTTCTCGTCTTCCGTCCTCTCGCTCCGGT
CCCGGCGCCGTCCTTGGTACGCCTGGGAAAGTCAGTGTGAGGGGCCGCGGCGGCAGGGCCCCTG
CACGCGGCGTGCCTGAAGCCGGGACTCGTCTGCCGCCTCTTTCCGCGTGAAACCCGGAGCTGGC
ATCGGGACCGCCGGTTTACTCATAGCCGTCGGTGGTGACCTTGAGTCTCTTCCAGGCACTTGGC
GGAAAGCACCAAAGTAGCATTTAGGTCCAGCAGCTCTGCAGGAATGGCCGAGTTTGGGATCTCC
CCTGGCCAGCTTGTGGCAGTGTTCTGTGACAAGTCATCTTCTGAAGAGGCCCTTAAAAAACTGG
TGGGTAGAGTTCAAGGATTAACTGGCAGCGAGGGCCAAGTATTCGTGGAAAACATCACCCAGCT
GTTGCAGTCTGCCCATAAGGAATCCAGCTTCGATGTCATTCTGTCCGGTATAGTCCCAGGAAGC
ACCTCTCTGCACAGTCCTGAGGCTCTGGCTGACATGGCCCGGATCCTCCGGCCAGGGGGGTGTC
TTTTTCTGAAAGAACCAGTGGAGACAACTGGAGTTAACAATGACAAAATAAAGACAGCCTCTAA
GCTGTGTTCAGCCCTGACTCTTTCTGGCCTTGTGGAAATAAAAGAGTTGCAGCGGGAGGCCTTA
AGCCCTGAGGAGGCGCAGTCCATGCAGGAGCACCTGGGCTACCACAGTGACAGCCTGCTCTCAG
TCCACGTCACAGGCAAGAAGCCAAACTTTGAAGTGGGTTCTTCTAGCCAGCTAAAGCTTCTCCA
CAAGAAGTCGTCTTCAGTGAAGCCTGTTGTGGATCCTGCTACTGCCAAGCTCTGGACCCTCTCA
GCCAATGACATGGAGGATGACAGCATGGATCTCATTGACTCAGATGAGCTGCTAGATCCAGAAG
ATTTGAAGAAGCCTGATCCAGCCTCTCTGAAGGCGCCTTCATGTGGGGAAGGGAAAAAGAGGAA
GGCCTGTAAGAACTGCACCTGTGGCCTGGCAGAGGAACTGGAGAAAGAGCAGTCCAAGGCGCAG
AGCTCTCAGCCCAAGTCAGCCTGTGGAAATTGCTACCTGGGAGATGCTTTCCGATGTGCCAACT
GCCCCTACCTTGGGATGCCAGCCTTCAAGCCTGGAGAGCAGGTCCTCCTGAGCAGTAGCAACCT
CCAGGATGCCTAGGAGGAAGCCCAAGCCCACACACCTCCTCCTCCAGCCGACTCCTGCCCCTCA
GTGCCTGCCAGGCCTCCTCCCATCCCTGGATTCAATCACTCTGAAAACATTCGCAGGGAGAGGC
TTGTAGCAGAGTGAAGCTGCTTGGGGCAGTGGGGTGTGGTGCTGCTATGTCTTGAAAGACCAAG
GTATGAGGGACCTGCCTTCTTAGTGTTAGGAGGAGGAGATGTACCGTAGGAACTCTGCTCCTGG
TGTTACAGTGCTGACCCTCTCCACCCTTGAGTCTAGACATCCTTGAATATTTATGCTGAATAAG
CTCCAGGTCCACTCATTGATGCTGCCACTTGCTGAACTTCCTCAGTCCGTATTACTTGGAGCCA
TGGGTCAGCTGTAAAAGGGCCTCGGGCACCAAAGAAGTCACTCCCTTAGTTGTCGTGATCCATC
TTGTGTCCTGCCTTTCTCACCTCACCCCATTTTACTGTAGTGTTGTATCTGTGTCCTGTTGTGA
TTTCTGTTAAATAGGTATTAAATTTTTGTGTTTCTGTCTCCCTTTTACTTTGTGTCTCTGTGTC
TGTGGGAGGCAGGGGTATGTGTCAGTCATCCACATTCAACTTGGACTATGAAAATTGTTTTTGA
AGAAGTCTGTGTCACACAGGAGTGGGGCCAGAGCTGCCTTTGGAGATTAAGAGCCAGGCTGAGG
AGAATGCAGTTTAGGGTAGCCTGGACCAGCAGCAAGGCGTATCAGAGCAGGAGACCCTCTGCAG
TCTCCCTCCTGCCTCTGCCCACATACCTGTAGTCCACCGTGCCTGCTCTTTCCTCTCCTTGAAA
CTTGATCTTCCTAACTTGCCTTTGCTTCTGAAGTTTAGCTATGGGTGTGGTAAAAAGCTCCTTT
GAGAAGCAGAATTTCTGTTGACCCCTGTGACTCTTGGCCACAAAGTATTGAGGTACATAGCCCC
ACTAAAAAAGTGGGGGCTATAGCCCCACAACCACAAGGAACTTGGTTCTGTCAGTACTGTGCCA
GCTTGGAAGAGGACTTATTTTCAAATAAGAACACAAGGCCTTGTTTTTGATTCCTAGTACCAAA
ACCAAAAAAGGTATTCTCAGGCCAGAGCAATTGACTGAAAAGCCAAGATAATAAGTGGGTGTGT
GACTGACTGATTTGTCACACAGCAACAAAAACTAACAGCCCCAAATAGGTTTAGGTTAGCGCTG
ACCAACTGGCCTAGCCACAGACCTGCTGATCGCCTCTACTGCAGTTGCCGCCGTGAGGGACAAA
CATTTTGGCCTCTGGGTTGAGGAGAAGCTCCTGAGCCAGAGCTTCCTTCAGACCTGCTTGTTGA
CTCCTACCTCTGATGGCACAAAGGATAATGGTTTGATTGGCATGGTCAATAGGGTCCTGGTGGG
GAGTCTTTCTGTCCTTCCACAAGGATGGGAAGGAACTTGTCCAGTTCAGTCAGGTCCTCGGCTG
GTGGAGAGAACCCGTGCCCGGAGCACATGTAGGCCTTTACCTGGCTACCATTGCACGCTGAGGG
ATTTGGAGTGTGTATGGTGGGGCACAGCTGTTTTCTGTCCAGACTCTTGATTCTGTGACACTAG
CCTAAGGAACAGTTTCAGCCATTTGTAAGCTTATAGTAAAGAATCCAAAAACAGTGTTAGCTGT
CACTGAATTCAACCTCCATCTTCCTCCCCTCCTCCTCTCTTCCCCCTGTCTGAAACAAGCTCTG
GCTACAGGAGCCTGAATCTCACAGTGCAGACCAAACTAGCCTGAGCACACGGTGACCCTCAGGC
TCCCAGATACTGGCATTACAAGCATGTCCCATCATGTCAAACCTGGCTTTAAAAAAAGGTTTTC
ATTTGCTGTGTGTGTCTGCGTATATGTCTGTGCACCAGGTTTGTGCAGTGCCCATGGAGCCCAG
AAGAGAGTATCACATCCTCTGGACTGAGCTGCTGTGTAGGTGCTGGGAATCAAACTTACGTCCT
CCCTAGAGGCAGCTAAGTTCTCCTAACCATTGAGGATTCCTCCAGCTCCCTGGCTTCTTAACTC
TAAGGTCTTTGGCTTAGAGTCTGGTAGTATGCACTCTATCTCACCTCGTTCTGAAATCACTTGG
TTGGTCTAGGCAACAGAGGCAAGCCACATCTTTCCTCCGTTTTGGTGACAGCTGGGCCTTAAGG
GGCCTGGAGCTGAAGCATGAGGGGAATGAGTGAGACGGCCTGCCATTGCCTGAAGCTGATAGTT
CTCTGATGTTACAAAATGTTGCTTCACCCAGTATATGGTGATGGGGATTTTCGGAAGGCTAAGC
AGACACCCTACCAGATAAGGATGGAGGTGTGGCCAGGCGGGACACAGCAGGATTTATTTGGACA
GTTCAACACTGGCTGAACATGAGAATCACCGGGCAGCTTCCAAAAATAAAAACAACCTCCTGTG
CCTGGGTTTTACTTACAAAGACTAGTTAAATCAGAATCTCTGGAGTCAGCAGTGTTTTGCGAGG
CTTTCCCAGGTGATTCTAAAGTGCATTCTGTGTTAGAGAAGACTTTTCCCACACAGCAGAAGAC
AAGGTAAAAAAAAACACCCCAGCCAGGTATTGTGGTGCACACCTGTAACTCCAGCACTCCAGAG
GCTGAAGCAGGAAGATTGAAAGTTTAAAGTAGCCTGAGCCAAAGGTCTAGTCAGGCTAGGCCAC
ATAATGAGACTGTTGAAAACCAAAAATCCTAAGCAAGAACCTCGGGTGCAATCAGGTGGCCCTT
AAGAGCGAGAGGGCTGGAGAGATAGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCC
TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTT
CTGGTGTGTCTGAAGACAGCTACAGTGCACATAAATAAATAATTTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006255107 ⟹ XP_006255169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,185,955 - 10,199,120 (+)	NCBI
mRatBN7.2	19	10,179,963 - 10,195,511 (+)	NCBI
Rnor_6.0	19	10,596,923 - 10,610,040 (+)	NCBI
Rnor_5.0	19	10,591,726 - 10,607,111 (+)	NCBI

Sequence:

show sequence

CTCAGACGCTGTGCGGCATCTTCTCGCGAGAGATTGGAACGAGAAGCCGGTGTCTACCGAGCGT
GTTTTCAGGCTCTGAGGAAGCATTTAGGTCCAGCAGCTCTGCAGGAATGGCCGAGTTTGGGATC
TCCCCTGGCCAGCTTGTGGCAGTGTTCTGTGACAAGTCATCTTCTGAAGAGGCCCTTAAAAAAC
TGGTGGGTAGAGTTCAAGGATTAACTGGCAGCGAGGGCCAAGTATTCGTGGAAAACATCACCCA
GCTGTTGCAGTCTGCCCATAAGGAATCCAGCTTCGATGTCATTCTGTCCGGTATAGTCCCAGGA
AGCACCTCTCTGCACAGTCCTGAGGCTCTGGCTGACATGGCCCGGATCCTCCGGCCAGGGGGGT
GTCTTTTTCTGAAAGAACCAGTGGAGACAACTGGAGTTAACAATGACAAAATAAAGACAGCCTC
TAAGCTGTGTTCAGCCCTGACTCTTTCTGGCCTTGTGGAAATAAAAGAGTTGCAGCGGGAGGCC
TTAAGCCCTGAGGAGGCGCAGTCCATGCAGGAGCACCTGGGCTACCACAGTGACAGCCTGCTCT
CAGTCCACGTCACAGGCAAGAAGCCAAACTTTGAAGTGGGTTCTTCTAGCCAGCTAAAGCTTCT
CCACAAGAAGTCGTCTTCAGTGAAGCCTGTTGTGGATCCTGCTACTGCCAAGCTCTGGACCCTC
TCAGCCAATGACATGGAGGATGACAGCATGGATCTCATTGACTCAGATGAGCTGCTAGATCCAG
AAGATTTGAAGAAGCCTGATCCAGCCTCTCTGAAGGCGCCTTCATGTGGGGAAGGGAAAAAGAG
GAAGGCCTGTAAGAACTGCACCTGTGGCCTGGCAGAGGAACTGGAGAAAGAGCAGTCCAAGGCG
CAGAGCTCTCAGCCCAAGTCAGCCTGTGGAAATTGCTACCTGGGAGATGCTTTCCGATGTGCCA
ACTGCCCCTACCTTGGGATGCCAGCCTTCAAGCCTGGAGAGCAGGTCCTCCTGAGCAGTAGCAA
CCTCCAGGATGCCTAGGAGGAAGCCCAAGCCCACACACCTCCTCCTCCAGCCGACTCCTGCCCC
TCAGTGCCTGCCAGGCCTCCTCCCATCCCTGGATTCAATCACTCTGAAAACATTCGCAGGGAGA
GGCTTGTAGCAGAGTGAAGCTGCTTGGGGCAGTGGGGTGTGGTGCTGCTATGTCTTGAAAGACC
AAGGTATGAGGGACCTGCCTTCTTAGTGTTAGGAGGAGGAGATGTACCGTAGGAACTCTGCTCC
TGGTGTTACAGTGCTGACCCTCTCCACCCTTGAGTCTAGACATCCTTGAATATTTATGCTGAAT
AAGCTCCAGGTCCACTCATTGATGCTGCCACTTGCTGAACTTCCTCAGTCCGTATTACTTGGAG
CCATGGGTCAGCTGTAAAAGGGCCTCGGGCACCAAAGAAGTCACTCCCTTAGTTGTCGTGATCC
ATCTTGTGTCCTGCCTTTCTCACCTCACCCCATTTTACTGTAGTGTTGTATCTGTGTCCTGTTG
TGATTTCTGTTAAATAGGTATTAAATTTTTGTGTTTCTGTCTCCCTTTTA

hide sequence

RefSeq Acc Id:

XM_006255108 ⟹ XP_006255170

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,185,963 - 10,199,120 (+)	NCBI
mRatBN7.2	19	10,179,999 - 10,195,511 (+)	NCBI
Rnor_6.0	19	10,596,929 - 10,612,414 (+)	NCBI
Rnor_5.0	19	10,591,726 - 10,607,111 (+)	NCBI

Sequence:

show sequence

CGCTGTGCGGCATCTTCTCGCGAGAGATTGGAACGAGAAGCCGGTGTCTACCGAGCGTGTTTTC
AGGCTCTGAGGAAGTAGCATTTAGGTCCAGCAGCTCTGCAGGAATGGCCGAGTTTGGGATCTCC
CCTGGCCAGCTTGTGGCAGTGTTCTGTGACAAGTCATCTTCTGAAGAGGCCCTTAAAAAACTGG
TGGGTAGAGTTCAAGGATTAACTGGCAGCGAGGGCCAAGTATTCGTGGAAAACATCACCCAGCT
GTTGCAGTCTGCCCATAAGGAATCCAGCTTCGATGTCATTCTGTCCGGTATAGTCCCAGGAAGC
ACCTCTCTGCACAGTCCTGAGGCTCTGGCTGACATGGCCCGGATCCTCCGGCCAGGGGGGTGTC
TTTTTCTGAAAGAACCAGTGGAGACAACTGGAGTTAACAATGACAAAATAAAGACAGCCTCTAA
GCTGTGTTCAGCCCTGACTCTTTCTGGCCTTGTGGAAATAAAAGAGTTGCAGCGGGAGGCCTTA
AGCCCTGAGGAGGCGCAGTCCATGCAGGAGCACCTGGGCTACCACAGTGACAGCCTGCTCTCAG
TCCACGTCACAGGCAAGAAGCCAAACTTTGAAGTGGGTTCTTCTAGCCAGCTAAAGCTTCTCCA
CAAGAAGTCGTCTTCAGTGAAGCCTGTTGTGGATCCTGCTACTGCCAAGCTCTGGACCCTCTCA
GCCAATGACATGGAGGATGACAGCATGGATCTCATTGACTCAGATGAGCTGCTAGATCCAGAAG
ATTTGAAGAAGCCTGATCCAGCCTCTCTGAAGGCGCCTTCATGTGGGGAAGGGAAAAAGAGGAA
GGCCTGTAAGAACTGCACCTGTGGCCTGGCAGAGGAACTGGAGAAAGAGCAGTCCAAGGCGCAG
AGCTCTCAGCCCAAGTCAGCCTGTGGAAATTGCTACCTGGGAGATGCTTTCCGATGTGCCAACT
GCCCCTACCTTGGGATGCCAGCCTTCAAGCCTGGAGAGCAGGTCCTCCTGAGCAGTAGCAACCT
CCAGGATGCCTAGGAGGAAGCCCAAGCCCACACACCTCCTCCTCCAGCCGACTCCTGCCCCTCA
GTGCCTGCCAGGCCTCCTCCCATCCCTGGATTCAATCACTCTGAAAACATTCGCAGGGAGAGGC
TTGTAGCAGAGTGAAGCTGCTTGGGGCAGTGGGGTGTGGTGCTGCTATGTCTTGAAAGACCAAG
GTATGAGGGACCTGCCTTCTTAGTGTTAGGAGGAGGAGATGTACCGTAGGAACTCTGCTCCTGG
TGTTACAGTGCTGACCCTCTCCACCCTTGAGTCTAGACATCCTTGAATATTTATGCTGAATAAG
CTCCAGGTCCACTCATTGATGCTGCCACTTGCTGAACTTCCTCAGTCCGTATTACTTGGAGCCA
TGGGTCAGCTGTAAAAGGGCCTCGGGCACCAAAGAAGTCACTCCCTTAGTTGTCGTGATCCATC
TTGTGTCCTGCCTTTCTCACCTCACCCCATTTTACTGTAGTGTTGTATCTGTGTCCTGTTGTGA
TTTCTGTTAAATAGGTATTAAATTTTTGTGTTTCTGTCTCCCTTTTACTTTGTGTCTCTGTGTC
TGTGGGAGGCAGGGGTATGTGTCAGTCATCCACATTCAACTTGGACTATGAAAATTGTTTTTGA
AGAAGTCTGTGTCACACAGGAGTGGGGCCAGAGCTGCCTTTGGAGATTAAGAGCCAGGCTGAGG
AGAATGCAGTTTAGGGTAGCCTGGACCAGCAGCAAGGCGTATCAGAGCAGGAGACCCTCTGCAG
TCTCCCTCCTGCCTCTGCCCACATACCTGTAGTCCACCGTGCCTGCTCTTTCCTCTCCTTGAAA
CTTGATCTTCCTAACTTGCCTTTGCTTCTGAAGTTTAGCTATGGGTGTGGTAAAAAGCTCCTTT
GAGAAGCAGAATTTCTGTTGACCCCTGTGACTCTTGGCCACAAAGTATTGAGGTACATAGCCCC
ACTAAAAAAGTGGGGGCTATAGCCCCACAACCACAAGGAACTTGGTTCTGTCAGTACTGTGCCA
GCTTGGAAGAGGACTTATTTTCAAATAAGAACACAAGGCCTTGTTTTTGATTCCTAGTACCAAA
ACCAAAAAAGGTATTCTCAGGCCAGAGCAATTGACTGAAAAGCCAAGATAATAAGTGGGTGTGT
GACTGACTGATTTGTCACACAGCAACAAAAACTAACAGCCCCAAATAGGTTTAGGTTAGCGCTG
ACCAACTGGCCTAGCCACAGACCTGCTGATCGCCTCTACTGCAGTTGCCGCCGTGAGGGACAAA
CATTTTGGCCTCTGGGTTGAGGAGAAGCTCCTGAGCCAGAGCTTCCTTCAGACCTGCTTGTTGA
CTCCTACCTCTGATGGCACAAAGGATAATGGTTTGATTGGCATGGTCAATAGGGTCCTGGTGGG
GAGTCTTTCTGTCCTTCCACAAGGATGGGAAGGAACTTGTCCAGTTCAGTCAGGTCCTCGGCTG
GTGGAGAGAACCCGTGCCCGGAGCACATGTAGGCCTTTACCTGGCTACCATTGCACGCTGAGGG
ATTTGGAGTGTGTATGGTGGGGCACAGCTGTTTTCTGTCCAGACTCTTGATTCTGTGACACTAG
CCTAAGGAACAGTTTCAGCCATTTGTAAGCTTATAGTAAAGAATCCAAAAACAGTGTTAGCTGT
CACTGAATTCAACCTCCATCTTCCTCCCCTCCTCCTCTCTTCCCCCTGTCTGAAACAAGCTCTG
GCTACAGGAGCCTGAATCTCACAGTGCAGACCAAACTAGCCTGAGCACACGGTGACCCTCAGGC
TCCCAGATACTGGCATTACAAGCATGTCCCATCATGTCAAACCTGGCTTTAAAAAAAGGTTTTC
ATTTGCTGTGTGTGTCTGCGTATATGTCTGTGCACCAGGTTTGTGCAGTGCCCATGGAGCCCAG
AAGAGAGTATCACATCCTCTGGACTGAGCTGCTGTGTAGGTGCTGGGAATCAAACTTACGTCCT
CCCTAGAGGCAGCTAAGTTCTCCTAACCATTGAGGATTCCTCCAGCTCCCTGGCTTCTTAACTC
TAAGGTCTTTGGCTTAGAGTCTGGTAGTATGCACTCTATCTCACCTCGTTCTGAAATCACTTGG
TTGGTCTAGGCAACAGAGGCAAGCCACATCTTTCCTCCGTTTTGGTGACAGCTGGGCCTTAAGG
GGCCTGGAGCTGAAGCATGAGGGGAATGAGTGAGACGGCCTGCCATTGCCTGAAGCTGATAGTT
CTCTGATGTTACAAAATGTTGCTTCACCCAGTATATGGTGATGGGGATTTTCGGAAGGCTAAGC
AGACACCCTACCAGATAAGGATGGAGGTGTGGCCAGGCGGGACACAGCAGGATTTATTTGGACA
GTTCAACACTGGCTGAACATGAGAATCACCGGGCAGCTTCCAAAAATAAAAACAACCTCCTGTG
CCTGGGTTTTACTTACAAAGACTAGTTAAATCAGAATCTCTGGAGTCAGCAGTGTTTTGCGAGG
CTTTCCCAGGTGATTCTAAAGTGCATTCTGTGTTAGAGAAGACTTTTCCCACACAGCAGAAGAC
AAGGTAAAAAAAAACACCCCAGCCAGGTATTGTGGTGCACACCTGTAACTCCAGCACTCCAGAG
GCTGAAGCAGGAAGATTGAAAGTTTAAAGTAGCCTGAGCCAAAGGTCTAGTCAGGCTAGGCCAC
ATAATGAGACTGTTGAAAACCAAAAATCCTAAGCAAGAACCTCGGGTGCAATCAGGTGGCCCTT
AAGAGCGAGAGGGCTGGAGAGATAGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCC
TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTT
CTGGTGTGTCTGAAGACAGCTACAGTGCACATAAATAAATAATTTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039097710 ⟹ XP_038953638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,186,387 - 10,199,120 (+)	NCBI
mRatBN7.2	19	10,180,052 - 10,195,511 (+)	NCBI

RefSeq Acc Id:

XM_063277990 ⟹ XP_063134060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,186,387 - 10,199,120 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007690	(Get FASTA)	NCBI Sequence Viewer
	XP_006255168	(Get FASTA)	NCBI Sequence Viewer
	XP_006255169	(Get FASTA)	NCBI Sequence Viewer
	XP_006255170	(Get FASTA)	NCBI Sequence Viewer
	XP_038953638	(Get FASTA)	NCBI Sequence Viewer
	XP_063134060	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83753	(Get FASTA)	NCBI Sequence Viewer
	EDL87323	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021769
	ENSRNOP00000021769.3
	ENSRNOP00000096214
	ENSRNOP00000106580
GenBank Protein	Q5XID1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007690 ⟸ NM_001007689

- UniProtKB:

Q5XID1 (UniProtKB/Swiss-Prot), A6JY45 (UniProtKB/TrEMBL), A0A8I6ASY3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEFGISPGQLVAVFCDKSSSEEALKKLVGRVQGLTGSEGQVFVENITQLLQSAHKESSFDVIL
SGIVPGSTSLHSPEALADMARILRPGGCLFLKEPVETTGVNNDKIKTASKLCSALTLSGLVEIK
ELQREALSPEEAQSMQEHLGYHSDSLLSVHVTGKKPNFEVGSSSQLKLLHKKSSSVKPVVDPAT
AKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLKAPSCGEGKKRKACKNCTCGLAEELE
KEQSKAQSSQPKSACGNCYLGDAFRCANCPYLGMPAFKPGEQVLLSSSNLQDA

hide sequence

RefSeq Acc Id:	XP_006255169 ⟸ XM_006255107
- Peptide Label:	isoform X1
- UniProtKB:	Q5XID1 (UniProtKB/Swiss-Prot), A6JY45 (UniProtKB/TrEMBL), A0A8I6ASY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEFGISPGQLVAVFCDKSSSEEALKKLVGRVQGLTGSEGQVFVENITQLLQSAHKESSFDVIL SGIVPGSTSLHSPEALADMARILRPGGCLFLKEPVETTGVNNDKIKTASKLCSALTLSGLVEIK ELQREALSPEEAQSMQEHLGYHSDSLLSVHVTGKKPNFEVGSSSQLKLLHKKSSSVKPVVDPAT AKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLKAPSCGEGKKRKACKNCTCGLAEELE KEQSKAQSSQPKSACGNCYLGDAFRCANCPYLGMPAFKPGEQVLLSSSNLQDA hide sequence

RefSeq Acc Id:	XP_006255170 ⟸ XM_006255108
- Peptide Label:	isoform X1
- UniProtKB:	Q5XID1 (UniProtKB/Swiss-Prot), A6JY45 (UniProtKB/TrEMBL), A0A8I6ASY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEFGISPGQLVAVFCDKSSSEEALKKLVGRVQGLTGSEGQVFVENITQLLQSAHKESSFDVIL SGIVPGSTSLHSPEALADMARILRPGGCLFLKEPVETTGVNNDKIKTASKLCSALTLSGLVEIK ELQREALSPEEAQSMQEHLGYHSDSLLSVHVTGKKPNFEVGSSSQLKLLHKKSSSVKPVVDPAT AKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLKAPSCGEGKKRKACKNCTCGLAEELE KEQSKAQSSQPKSACGNCYLGDAFRCANCPYLGMPAFKPGEQVLLSSSNLQDA hide sequence

RefSeq Acc Id:	XP_006255168 ⟸ XM_006255106
- Peptide Label:	isoform X1
- UniProtKB:	Q5XID1 (UniProtKB/Swiss-Prot), A6JY45 (UniProtKB/TrEMBL), A0A8I6ASY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEFGISPGQLVAVFCDKSSSEEALKKLVGRVQGLTGSEGQVFVENITQLLQSAHKESSFDVIL SGIVPGSTSLHSPEALADMARILRPGGCLFLKEPVETTGVNNDKIKTASKLCSALTLSGLVEIK ELQREALSPEEAQSMQEHLGYHSDSLLSVHVTGKKPNFEVGSSSQLKLLHKKSSSVKPVVDPAT AKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLKAPSCGEGKKRKACKNCTCGLAEELE KEQSKAQSSQPKSACGNCYLGDAFRCANCPYLGMPAFKPGEQVLLSSSNLQDA hide sequence

Ensembl Acc Id:

ENSRNOP00000021769 ⟸ ENSRNOT00000021769

RefSeq Acc Id:	XP_038953638 ⟸ XM_039097710
- Peptide Label:	isoform X1
- UniProtKB:	Q5XID1 (UniProtKB/Swiss-Prot), A6JY45 (UniProtKB/TrEMBL), A0A8I6ASY3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000096214 ⟸ ENSRNOT00000116645

RefSeq Acc Id:	XP_063134060 ⟸ XM_063277990
- Peptide Label:	isoform X1
- UniProtKB:	Q5XID1 (UniProtKB/Swiss-Prot), A6JY45 (UniProtKB/TrEMBL), A0A8I6ASY3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000106580 ⟸ ENSRNOT00000172702

Protein Domains

Anamorsin C-terminal Anamorsin N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XID1-F1-model_v2	AlphaFold	Q5XID1	1-309	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700940

Promoter ID:

EPDNEW_R11464

Type:

initiation region

Name:

Ciapin1_1

Description:

cytokine induced apoptosis inhibitor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	10,596,993 - 10,597,053	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1549737	AgrOrtholog
BioCyc Gene	G2FUF-6515	BioCyc
Ensembl Genes	ENSRNOG00000016234	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000021769	ENTREZGENE
	ENSRNOT00000021769.6	UniProtKB/Swiss-Prot
	ENSRNOT00000116645	ENTREZGENE
	ENSRNOT00000172702	ENTREZGENE
Gene3D-CATH	3.40.50.150	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7192604	IMAGE-MGC_LOAD
InterPro	Anamorsin	UniProtKB/Swiss-Prot
	Anamorsin_N_metazoan	UniProtKB/Swiss-Prot
	CIAPIN1	UniProtKB/Swiss-Prot
	SAM-dependent_MTases	UniProtKB/Swiss-Prot
KEGG Report	rno:307649	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94686	IMAGE-MGC_LOAD
NCBI Gene	307649	ENTREZGENE
PANTHER	ANAMORSIN	UniProtKB/Swiss-Prot
	PTHR13273	UniProtKB/Swiss-Prot
Pfam	Anamorsin_N	UniProtKB/Swiss-Prot
	CIAPIN1	UniProtKB/Swiss-Prot
PhenoGen	Ciapin1	PhenoGen
RatGTEx	ENSRNOG00000016234	RatGTEx
Superfamily-SCOP	SSF53335	UniProtKB/Swiss-Prot
UniProt	A0A8I6ASY3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L8M8_RAT	UniProtKB/TrEMBL
	A6JY45	ENTREZGENE, UniProtKB/TrEMBL
	CPIN1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Ciapin1	cytokine induced apoptosis inhibitor 1	MGC94686	similar to RIKEN cDNA 2810413N20	Symbol and Name updated	1299863	APPROVED
2005-09-15	MGC94686	similar to RIKEN cDNA 2810413N20			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations