Mrpl9 (mitochondrial ribosomal protein L9) - Rat Genome Database

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Gene: Mrpl9 (mitochondrial ribosomal protein L9) Rattus norvegicus
Analyze
Symbol: Mrpl9
Name: mitochondrial ribosomal protein L9
RGD ID: 1359171
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPL9 (mitochondrial ribosomal protein L9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 39S ribosomal protein L9, mitochondrial; L9mt; large ribosomal subunit protein bL9m; MGC95263; MRP-L9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82184,768,837 - 184,775,787 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2184,763,529 - 184,775,777 (+)EnsemblGRCr8
mRatBN7.22182,082,012 - 182,086,758 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,076,369 - 182,087,095 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2189,745,205 - 189,749,925 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02187,549,461 - 187,554,181 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02182,377,673 - 182,382,393 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02195,684,750 - 195,689,470 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2195,684,210 - 195,689,052 (+)Ensemblrn6Rnor6.0
Rnor_5.02215,163,444 - 215,168,164 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42189,417,391 - 189,422,111 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2174,632,275 - 174,636,995 (+)NCBICelera
RGSC_v3.12189,367,496 - 189,372,212 (+)NCBI
Cytogenetic Map2q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7. Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. Suzuki T, etal., J Biol Chem 2001 Jun 15;276(24):21724-36. Epub 2001 Feb 21.
Additional References at PubMed
PMID:14651853   PMID:18614015   PMID:22681889   PMID:25278503   PMID:28892042  


Genomics

Comparative Map Data
Mrpl9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82184,768,837 - 184,775,787 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2184,763,529 - 184,775,777 (+)EnsemblGRCr8
mRatBN7.22182,082,012 - 182,086,758 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,076,369 - 182,087,095 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2189,745,205 - 189,749,925 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02187,549,461 - 187,554,181 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02182,377,673 - 182,382,393 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02195,684,750 - 195,689,470 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2195,684,210 - 195,689,052 (+)Ensemblrn6Rnor6.0
Rnor_5.02215,163,444 - 215,168,164 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42189,417,391 - 189,422,111 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2174,632,275 - 174,636,995 (+)NCBICelera
RGSC_v3.12189,367,496 - 189,372,212 (+)NCBI
Cytogenetic Map2q34NCBI
MRPL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,759,647 - 151,763,496 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,759,647 - 151,763,496 (-)Ensemblhg38GRCh38
GRCh371151,732,123 - 151,735,972 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,998,747 - 150,002,664 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341148,545,197 - 148,549,113NCBI
Celera1124,846,736 - 124,850,653 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1123,108,931 - 123,112,850 (-)NCBIHuRef
CHM1_11153,127,254 - 153,131,172 (-)NCBICHM1_1
T2T-CHM13v2.01150,883,033 - 150,886,885 (-)NCBIT2T-CHM13v2.0
Mrpl9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,350,631 - 94,355,831 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,350,625 - 94,358,437 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38394,443,154 - 94,448,708 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,443,318 - 94,451,130 (+)Ensemblmm10GRCm38
MGSCv37394,247,258 - 94,252,630 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36394,528,740 - 94,534,112 (+)NCBIMGSCv36mm8
Celera395,888,337 - 95,893,731 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.68NCBI
Mrpl9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955589662,713 - 666,488 (+)Ensembl
ChiLan1.0NW_004955589662,713 - 666,488 (+)NCBIChiLan1.0ChiLan1.0
MRPL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,054,292 - 98,064,165 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,805,480 - 97,815,354 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,118,183 - 127,122,065 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,761,826 - 130,766,353 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,761,826 - 130,766,349 (-)EnsemblpanPan2panpan1.1
MRPL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,782,975 - 60,787,313 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,224,344 - 60,228,658 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01761,799,517 - 61,803,832 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,799,517 - 61,803,817 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,626,296 - 60,630,607 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,712,616 - 60,716,935 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,441,543 - 61,445,858 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mrpl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,926,392 - 22,929,307 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365801,956,774 - 1,959,689 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,448,169 - 97,463,131 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1497,448,160 - 97,462,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,471,158 - 106,485,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,922,230 - 11,961,387 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2011,922,239 - 11,962,254 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603811,491,681 - 11,531,166 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477219,434,901 - 19,438,757 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477219,435,032 - 19,438,802 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Mrpl9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1362,725,841 - 62,730,569 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mrpl9
6 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:148
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000028316
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2159440760195313808Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat

Markers in Region
RH143574  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,084,424 - 182,084,536 (+)MAPPERmRatBN7.2
Rnor_6.02195,687,137 - 195,687,248NCBIRnor6.0
Rnor_5.02215,165,831 - 215,165,942UniSTSRnor5.0
RGSC_v3.42189,419,778 - 189,419,889UniSTSRGSC3.4
Celera2174,634,662 - 174,634,773UniSTS
RH 3.4 Map21198.1UniSTS
Cytogenetic Map2q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000028316   ⟹   ENSRNOP00000028316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2184,770,286 - 184,775,777 (+)Ensembl
mRatBN7.2 Ensembl2182,076,369 - 182,086,760 (+)Ensembl
Rnor_6.0 Ensembl2195,684,210 - 195,689,052 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106286   ⟹   ENSRNOP00000095049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2184,769,854 - 184,775,777 (+)Ensembl
mRatBN7.2 Ensembl2182,082,022 - 182,087,095 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000140033   ⟹   ENSRNOP00000102427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2184,765,150 - 184,775,777 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000152084   ⟹   ENSRNOP00000105956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2184,763,529 - 184,775,777 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000158795   ⟹   ENSRNOP00000110085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2184,767,394 - 184,775,777 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000173247   ⟹   ENSRNOP00000110015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2184,767,722 - 184,775,777 (+)Ensembl
RefSeq Acc Id: NM_001007696   ⟹   NP_001007697
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82184,771,067 - 184,775,787 (+)NCBI
mRatBN7.22182,082,038 - 182,086,758 (+)NCBI
Rnor_6.02195,684,750 - 195,689,470 (+)NCBI
Rnor_5.02215,163,444 - 215,168,164 (+)NCBI
RGSC_v3.42189,417,391 - 189,422,111 (+)RGD
Celera2174,632,275 - 174,636,995 (+)RGD
Sequence:
RefSeq Acc Id: XM_039102342   ⟹   XP_038958270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82184,768,837 - 184,774,307 (+)NCBI
mRatBN7.22182,082,012 - 182,085,329 (+)NCBI
RefSeq Acc Id: XM_063281869   ⟹   XP_063137939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82184,768,837 - 184,775,787 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001007697 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958270 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137939 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH82085 (Get FASTA)   NCBI Sequence Viewer  
  EDL85786 (Get FASTA)   NCBI Sequence Viewer  
  EDL85787 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000028316
GenBank Protein Q641X9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001007697   ⟸   NM_001007696
- UniProtKB: Q641X9 (UniProtKB/Swiss-Prot),   A6K2R3 (UniProtKB/TrEMBL),   A0A8L2QGW3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028316   ⟸   ENSRNOT00000028316
RefSeq Acc Id: XP_038958270   ⟸   XM_039102342
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000095049   ⟸   ENSRNOT00000106286
RefSeq Acc Id: XP_063137939   ⟸   XM_063281869
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AIX2 (UniProtKB/TrEMBL),   A0A8L2QGW3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105956   ⟸   ENSRNOT00000152084
Ensembl Acc Id: ENSRNOP00000102427   ⟸   ENSRNOT00000140033
Ensembl Acc Id: ENSRNOP00000110085   ⟸   ENSRNOT00000158795
Ensembl Acc Id: ENSRNOP00000110015   ⟸   ENSRNOT00000173247
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q641X9-F1-model_v2 AlphaFold Q641X9 1-262 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691524
Promoter ID:EPDNEW_R2049
Type:multiple initiation site
Name:mrpl9_1
Description:mitochondrial ribosomal protein L9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02195,684,755 - 195,684,815EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359171 AgrOrtholog
BioCyc Gene G2FUF-52163 BioCyc
Ensembl Genes ENSRNOG00000020869 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000028316 ENTREZGENE
Gene3D-CATH 3.40.5.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7133689 IMAGE-MGC_LOAD
InterPro MRP-L9_N UniProtKB/Swiss-Prot
  Ribosomal_bL9m_C UniProtKB/Swiss-Prot
  Ribosomal_L9 UniProtKB/Swiss-Prot
  Ribosomal_L9/RNase_H1_N UniProtKB/Swiss-Prot
  Ribosomal_L9_N UniProtKB/Swiss-Prot
  Ribosomal_L9_N_sf UniProtKB/Swiss-Prot
KEGG Report rno:310653 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95263 IMAGE-MGC_LOAD
NCBI Gene 310653 ENTREZGENE
PANTHER PTHR21368 UniProtKB/Swiss-Prot
Pfam bL9m_N UniProtKB/Swiss-Prot
  Ribosomal_bL9m_C UniProtKB/Swiss-Prot
  Ribosomal_L9_N UniProtKB/Swiss-Prot
PhenoGen Mrpl9 PhenoGen
RatGTEx ENSRNOG00000020869 RatGTEx
Superfamily-SCOP SSF55658 UniProtKB/Swiss-Prot
UniProt A0A8I6AIX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QGW3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L1P3_RAT UniProtKB/TrEMBL
  A0ABK0LGQ8_RAT UniProtKB/TrEMBL
  A0ABK0LUI5_RAT UniProtKB/TrEMBL
  A0ABK0M4Z0_RAT UniProtKB/TrEMBL
  A6K2R3 ENTREZGENE, UniProtKB/TrEMBL
  A6K2R4_RAT UniProtKB/TrEMBL
  Q641X9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-01-21 Mrpl9  mitochondrial ribosomal protein L9  mrpl9  mitochondrial ribosomal protein L9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 mrpl9  mitochondrial ribosomal protein L9      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 mrpl9  mitochondrial ribosomal protein L9      Symbol and Name status set to provisional 70820 PROVISIONAL