Trim26 (tripartite motif-containing 26) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Trim26 (tripartite motif-containing 26) Rattus norvegicus
Analyze
Symbol: Trim26
Name: tripartite motif-containing 26
RGD ID: 1359126
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including host-mediated suppression of symbiont invasion; positive regulation of non-canonical NF-kappaB signal transduction; and protein K11-linked ubiquitination. Predicted to act upstream of or within canonical NF-kappaB signal transduction; non-canonical NF-kappaB signal transduction; and positive regulation of transcription by RNA polymerase II. Predicted to be active in cytoplasm and nucleus. Orthologous to human TRIM26 (tripartite motif containing 26); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: tripartite motif protein 26; tripartite motif-containing protein 26; zinc finger protein 173; Znf173
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,711,564 - 1,736,389 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl201,715,005 - 1,736,623 (-)EnsemblGRCr8
mRatBN7.2201,708,297 - 1,731,176 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,709,788 - 1,731,120 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx201,763,180 - 1,784,479 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,766,682 - 1,787,982 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,707,225 - 1,728,659 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,201,685 - 2,224,481 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,201,683 - 2,224,463 (-)Ensemblrn6Rnor6.0
Rnor_5.0204,239,932 - 4,248,755 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4201,802,458 - 1,811,283 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera202,418,533 - 2,427,356 (-)NCBICelera
RGSC_v3.1201,802,469 - 1,811,281 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-colchicine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
adenine  (ISO)
aflatoxin B1  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
cisplatin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (ISO)
lead(0)  (ISO)
Licochalcone B  (ISO)
menadione  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. The tripartite motif family identifies cell compartments. Reymond A, etal., EMBO J 2001 May 1;20(9):2140-51.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15060004   PMID:18248090   PMID:23077300  


Genomics

Comparative Map Data
Trim26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,711,564 - 1,736,389 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl201,715,005 - 1,736,623 (-)EnsemblGRCr8
mRatBN7.2201,708,297 - 1,731,176 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,709,788 - 1,731,120 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx201,763,180 - 1,784,479 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,766,682 - 1,787,982 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,707,225 - 1,728,659 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,201,685 - 2,224,481 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,201,683 - 2,224,463 (-)Ensemblrn6Rnor6.0
Rnor_5.0204,239,932 - 4,248,755 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4201,802,458 - 1,811,283 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera202,418,533 - 2,427,356 (-)NCBICelera
RGSC_v3.1201,802,469 - 1,811,281 (-)NCBI
Cytogenetic Map20p12NCBI
TRIM26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,184,455 - 30,213,406 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,184,446 - 30,213,435 (-)Ensemblhg38GRCh38
GRCh37630,152,232 - 30,181,183 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,260,211 - 30,289,132 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34630,260,212 - 30,289,132NCBI
Celera631,750,448 - 31,779,361 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,950,359 - 29,979,394 (-)NCBIHuRef
CHM1_1630,154,280 - 30,183,313 (-)NCBICHM1_1
T2T-CHM13v2.0630,048,685 - 30,077,640 (-)NCBIT2T-CHM13v2.0
Trim26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,148,016 - 37,170,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,148,026 - 37,170,290 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381736,837,123 - 36,859,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,837,134 - 36,859,398 (+)Ensemblmm10GRCm38
MGSCv371736,974,086 - 36,996,325 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361736,445,234 - 36,467,430 (+)NCBIMGSCv36mm8
Celera1740,256,349 - 40,278,617 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
Trim26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583303,081 - 325,560 (-)Ensembl
ChiLan1.0NW_004955583303,081 - 325,560 (-)NCBIChiLan1.0ChiLan1.0
TRIM26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,778,465 - 44,808,518 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,741,475 - 40,769,319 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,962,838 - 29,990,710 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,632,948 - 30,660,809 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,632,948 - 30,660,809 (-)EnsemblpanPan2panpan1.1
LOC119867740
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.03526,693,865 - 26,715,915 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.13526,348,104 - 26,370,104 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03526,409,307 - 26,431,249 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,879,397 - 27,901,449 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trim26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,732,023 - 32,762,964 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936723829,568 - 859,817 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936723827,847 - 859,860 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,756,341 - 22,780,259 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1722,757,794 - 22,767,662 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,795,848 - 24,819,779 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,284,454 - 42,312,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1742,283,713 - 42,313,292 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604429,844,053 - 29,873,853 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,230,073 - 25,259,980 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475425,238,992 - 25,258,454 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Trim26
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1189,806,454 - 9,829,264 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trim26
105 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:570
Count of miRNA genes:230
Interacting mature miRNAs:274
Transcripts:ENSRNOT00000001019
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013629303Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH132641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2201,709,836 - 1,710,018 (+)MAPPERmRatBN7.2
Rnor_6.0202,203,225 - 2,203,406NCBIRnor6.0
Rnor_5.0204,239,981 - 4,240,162UniSTSRnor5.0
RGSC_v3.4201,802,507 - 1,802,688UniSTSRGSC3.4
Celera202,418,582 - 2,418,763UniSTS
RH 3.4 Map206.2UniSTS
Cytogenetic Map20p12UniSTS
RH140419  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2201,710,545 - 1,710,744 (+)MAPPERmRatBN7.2
Rnor_6.0202,203,933 - 2,204,131NCBIRnor6.0
Rnor_5.0204,240,689 - 4,240,887UniSTSRnor5.0
RGSC_v3.4201,803,215 - 1,803,413UniSTSRGSC3.4
Celera202,419,290 - 2,419,488UniSTS
RH 3.4 Map206.4UniSTS
Cytogenetic Map20p12UniSTS
Trim26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2201,711,198 - 1,711,854 (+)MAPPERmRatBN7.2
Rnor_6.0202,204,586 - 2,205,241NCBIRnor6.0
Rnor_5.0204,241,342 - 4,241,997UniSTSRnor5.0
RGSC_v3.4201,803,868 - 1,804,523UniSTSRGSC3.4
Celera202,419,943 - 2,420,598UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001019   ⟹   ENSRNOP00000001019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl201,715,005 - 1,736,311 (-)Ensembl
mRatBN7.2 Ensembl201,709,788 - 1,731,096 (-)Ensembl
Rnor_6.0 Ensembl202,203,176 - 2,224,463 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077201   ⟹   ENSRNOP00000068752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl202,201,683 - 2,211,995 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl201,709,810 - 1,731,120 (-)Ensembl
Rnor_6.0 Ensembl202,204,519 - 2,208,065 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084596   ⟹   ENSRNOP00000069587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl202,203,098 - 2,210,033 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085912   ⟹   ENSRNOP00000072863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl201,709,810 - 1,731,120 (-)Ensembl
Rnor_6.0 Ensembl202,204,360 - 2,212,171 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120477   ⟹   ENSRNOP00000098141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl201,715,005 - 1,736,623 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120493   ⟹   ENSRNOP00000098153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl201,715,005 - 1,736,336 (-)Ensembl
RefSeq Acc Id: NM_001011665   ⟹   NP_001011665
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,715,005 - 1,736,311 (-)NCBI
mRatBN7.2201,709,788 - 1,731,096 (-)NCBI
Rnor_6.0202,203,176 - 2,224,463 (-)NCBI
Rnor_5.0204,239,932 - 4,248,755 (-)NCBI
RGSC_v3.4201,802,458 - 1,811,283 (-)RGD
Celera202,418,533 - 2,427,356 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772692   ⟹   XP_008770914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,711,564 - 1,736,383 (-)NCBI
mRatBN7.2201,708,297 - 1,731,168 (-)NCBI
Rnor_6.0202,201,685 - 2,224,481 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098635   ⟹   XP_038954563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,711,564 - 1,736,389 (-)NCBI
mRatBN7.2201,708,297 - 1,731,176 (-)NCBI
RefSeq Acc Id: XM_039098636   ⟹   XP_038954564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,711,564 - 1,736,372 (-)NCBI
mRatBN7.2201,708,297 - 1,731,174 (-)NCBI
RefSeq Acc Id: XM_039098637   ⟹   XP_038954565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,711,564 - 1,736,389 (-)NCBI
mRatBN7.2201,708,297 - 1,731,176 (-)NCBI
RefSeq Acc Id: XM_039098638   ⟹   XP_038954566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,711,564 - 1,736,389 (-)NCBI
mRatBN7.2201,708,297 - 1,731,176 (-)NCBI
RefSeq Acc Id: XM_063279086   ⟹   XP_063135156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,711,564 - 1,736,372 (-)NCBI
RefSeq Acc Id: XM_063279087   ⟹   XP_063135157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,711,564 - 1,736,383 (-)NCBI
RefSeq Acc Id: XM_063279088   ⟹   XP_063135158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,711,564 - 1,735,954 (-)NCBI
RefSeq Acc Id: NP_001011665   ⟸   NM_001011665
- UniProtKB: Q6MFZ0 (UniProtKB/Swiss-Prot),   P62603 (UniProtKB/Swiss-Prot),   A0A0G2K415 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770914   ⟸   XM_008772692
- Peptide Label: isoform X3
- UniProtKB: A6KR89 (UniProtKB/TrEMBL),   A0A0G2K415 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068752   ⟸   ENSRNOT00000077201
Ensembl Acc Id: ENSRNOP00000069587   ⟸   ENSRNOT00000084596
Ensembl Acc Id: ENSRNOP00000072863   ⟸   ENSRNOT00000085912
Ensembl Acc Id: ENSRNOP00000001019   ⟸   ENSRNOT00000001019
RefSeq Acc Id: XP_038954565   ⟸   XM_039098637
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K415 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954563   ⟸   XM_039098635
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8Z6 (UniProtKB/TrEMBL),   A0A0G2K415 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954566   ⟸   XM_039098638
- Peptide Label: isoform X3
- UniProtKB: A6KR89 (UniProtKB/TrEMBL),   A0A0G2K415 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954564   ⟸   XM_039098636
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8Z6 (UniProtKB/TrEMBL),   A0A0G2K415 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135157   ⟸   XM_063279087
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K415 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135156   ⟸   XM_063279086
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K415 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135158   ⟸   XM_063279088
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K415 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000098141   ⟸   ENSRNOT00000120477
Ensembl Acc Id: ENSRNOP00000098153   ⟸   ENSRNOT00000120493
Protein Domains
B box-type   B30.2/SPRY   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62603-F1-model_v2 AlphaFold P62603 1-542 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701277
Promoter ID:EPDNEW_R11801
Type:multiple initiation site
Name:Trim26_1
Description:tripartite motif-containing 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0202,224,486 - 2,224,546EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359126 AgrOrtholog
BioCyc Gene G2FUF-4966 BioCyc
Ensembl Genes ENSRNOG00000032930 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001019 ENTREZGENE
  ENSRNOT00000001019.7 UniProtKB/Swiss-Prot
  ENSRNOT00000120477 ENTREZGENE
  ENSRNOT00000120493 ENTREZGENE
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot
  3.30.40.10 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro B30.2/SPRY UniProtKB/Swiss-Prot
  B30.2/SPRY_sf UniProtKB/Swiss-Prot
  Butyrophylin_SPRY UniProtKB/Swiss-Prot
  ConA-like_dom_sf UniProtKB/Swiss-Prot
  PRY UniProtKB/Swiss-Prot
  SPRY_dom UniProtKB/Swiss-Prot
  TRIM/RBCC UniProtKB/Swiss-Prot
  Znf_B-box UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
KEGG Report rno:309586 UniProtKB/Swiss-Prot
NCBI Gene 309586 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/Swiss-Prot
Pfam PRY UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot
  zf-B_box UniProtKB/Swiss-Prot
  zf-C3HC4_4 UniProtKB/Swiss-Prot
PhenoGen Trim26 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot
PROSITE B302_SPRY UniProtKB/Swiss-Prot
  ZF_BBOX UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000032930 RatGTEx
SMART BBOX UniProtKB/Swiss-Prot
  PRY UniProtKB/Swiss-Prot
  RING UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot
  RING/U-box UniProtKB/Swiss-Prot
  SSF49899 UniProtKB/Swiss-Prot
UniProt A0A0G2K415 ENTREZGENE
  A0A8I6A8Z6 ENTREZGENE
  A0ABK0L3C0_RAT UniProtKB/TrEMBL
  A0ABK0L9U8_RAT UniProtKB/TrEMBL
  A6KR89 ENTREZGENE, UniProtKB/TrEMBL
  P62603 ENTREZGENE
  Q6MFZ0 ENTREZGENE
  TRI26_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6MFZ0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Trim26  tripartite motif-containing 26  Trim26  tripartite motif protein 26  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Trim26  tripartite motif protein 26      Symbol and Name updated 1559027 APPROVED
2005-11-17 Trim26  tripartite motif protein 26      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Trim26  tripartite motif protein 26      Symbol and Name status set to provisional 70820 PROVISIONAL