Olr1052 (olfactory receptor 1052) - Rat Genome Database

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Gene: Olr1052 (olfactory receptor 1052) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Olr1052
Name: olfactory receptor 1052
RGD ID: 1334106
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane. Orthologous to human OR6C76 (olfactory receptor family 6 subfamily C member 76).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: olfactory receptor gene Olr1052; olfactory receptor Olr1052
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr876,969,126 - 6,970,112 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl76,969,126 - 6,970,112 (+)EnsemblGRCr8
mRatBN7.276,318,314 - 6,319,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl76,318,314 - 6,319,300 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx79,203,541 - 9,204,527 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0711,079,199 - 11,080,185 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.078,914,803 - 8,915,789 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
RGSC_v3.477,740,220 - 7,741,155 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera74,557,908 - 4,558,844 (+)NCBICelera
RGSC_v3.177,740,219 - 7,741,155 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000113980   ⟹   ENSRNOP00000089315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl76,969,126 - 6,970,112 (+)Ensembl
mRatBN7.2 Ensembl76,318,314 - 6,319,300 (+)Ensembl
RefSeq Acc Id: NM_001001363   ⟹   NP_001001363
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr876,969,126 - 6,970,112 (+)NCBI
mRatBN7.276,318,314 - 6,319,300 (+)NCBI
RGSC_v3.477,740,220 - 7,741,155 (+)RGD
Celera74,557,908 - 4,558,844 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001001363 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000089315
  ENSRNOP00000089315.1
RefSeq Acc Id: NP_001001363   ⟸   NM_001001363
- UniProtKB: A0A8I6A700 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000089315   ⟸   ENSRNOT00000113980
Protein Domains
G-protein coupled receptors family 1 profile

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1334106 AgrOrtholog
BioCyc Gene G2FUF-35108 BioCyc
Ensembl Genes ENSRNOG00000067519 Ensembl
  ENSRNOG00000076871 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000113980 ENTREZGENE
  ENSRNOT00000113980.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
NCBI Gene 288838 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 6C76 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Olr1052 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000067519 RatGTEx
  ENSRNOG00000076871 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6A700 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Olr1052  olfactory receptor 1052   Olr1052_predicted  olfactory receptor 1052 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1052_predicted  olfactory receptor 1052 (predicted)      Symbol and Name status set to approved 70820 APPROVED