Or5as1 (olfactory receptor family 5 subfamily AS member 1) - Rat Genome Database

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Gene: Or5as1 (olfactory receptor family 5 subfamily AS member 1) Rattus norvegicus
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Symbol: Or5as1
Name: olfactory receptor family 5 subfamily AS member 1
RGD ID: 1333932
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane. Orthologous to human OR5AS1 (olfactory receptor family 5 subfamily AS member 1); INTERACTS WITH 17beta-estradiol; bisphenol A; indole-3-methanol.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 544; olfactory receptor gene Olr544; olfactory receptor Olr544; Olr544
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8392,780,992 - 92,781,930 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl392,780,992 - 92,781,930 (-)EnsemblGRCr8
mRatBN7.2372,324,043 - 72,324,981 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl372,323,706 - 72,326,585 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx375,786,160 - 75,787,098 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0384,384,701 - 84,385,639 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0382,142,683 - 82,143,621 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0374,867,637 - 74,868,575 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl374,867,637 - 74,868,575 (-)Ensemblrn6Rnor6.0
Rnor_5.0381,518,429 - 81,519,367 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4370,609,517 - 70,610,455 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera371,637,149 - 71,638,087 (-)NCBICelera
RGSC_v3.1370,505,888 - 70,506,827 (-)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Or5as1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8392,780,992 - 92,781,930 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl392,780,992 - 92,781,930 (-)EnsemblGRCr8
mRatBN7.2372,324,043 - 72,324,981 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl372,323,706 - 72,326,585 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx375,786,160 - 75,787,098 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0384,384,701 - 84,385,639 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0382,142,683 - 82,143,621 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0374,867,637 - 74,868,575 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl374,867,637 - 74,868,575 (-)Ensemblrn6Rnor6.0
Rnor_5.0381,518,429 - 81,519,367 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4370,609,517 - 70,610,455 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera371,637,149 - 71,638,087 (-)NCBICelera
RGSC_v3.1370,505,888 - 70,506,827 (-)NCBI
Cytogenetic Map3q24NCBI
OR5AS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,027,654 - 56,038,191 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,027,654 - 56,038,191 (+)Ensemblhg38GRCh38
GRCh371155,795,130 - 55,805,667 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361155,554,471 - 55,555,445 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341155,554,470 - 55,555,445NCBI
Celera1153,138,060 - 53,139,034 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1152,126,884 - 52,127,858 (+)NCBIHuRef
CHM1_11155,663,434 - 55,664,408 (+)NCBICHM1_1
T2T-CHM13v2.01155,965,991 - 55,976,529 (+)NCBIT2T-CHM13v2.0
Or5as1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39286,980,064 - 86,981,003 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl286,979,525 - 86,982,968 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38287,149,720 - 87,150,659 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl287,149,181 - 87,152,624 (-)Ensemblmm10GRCm38
MGSCv37286,989,877 - 86,990,816 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36286,950,560 - 86,951,498 (-)NCBIMGSCv36mm8
Celera288,739,235 - 88,740,174 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.86NCBI
LOC100973137
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2957,181,936 - 57,192,456 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11158,197,620 - 58,208,143 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01151,268,032 - 51,268,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
OR5AS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11839,827,651 - 39,828,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1839,827,651 - 39,828,589 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1839,352,559 - 39,353,497 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01840,517,203 - 40,518,141 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1840,517,203 - 40,518,141 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11840,127,671 - 40,128,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01839,688,721 - 39,689,659 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01840,276,050 - 40,276,988 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC100511340
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1951,413,280 - 51,414,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2956,071,316 - 56,072,245 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103235728
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,701,710 - 16,703,494 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038114,021,033 - 114,022,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or5as1
5 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:77
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000051625
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat


Expression

RNA-SEQ Expression

endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
reproductive system
respiratory system
1 2 1 1 1 16 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000051625   ⟹   ENSRNOP00000039698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl392,780,992 - 92,781,930 (-)Ensembl
mRatBN7.2 Ensembl372,323,706 - 72,326,585 (-)Ensembl
Rnor_6.0 Ensembl374,867,637 - 74,868,575 (-)Ensembl
RefSeq Acc Id: NM_001001052   ⟹   NP_001001052
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8392,780,992 - 92,781,930 (-)NCBI
mRatBN7.2372,324,043 - 72,324,981 (-)NCBI
Rnor_6.0374,867,637 - 74,868,575 (-)NCBI
Rnor_5.0381,518,429 - 81,519,367 (-)NCBI
RGSC_v3.4370,609,517 - 70,610,455 (-)RGD
Celera371,637,149 - 71,638,087 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001001052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000039698
  ENSRNOP00000039698.5
RefSeq Acc Id: NP_001001052   ⟸   NM_001001052
- UniProtKB: D3ZJD9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039698   ⟸   ENSRNOT00000051625

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJD9-F1-model_v2 AlphaFold D3ZJD9 1-312 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333932 AgrOrtholog
BioCyc Gene G2FUF-49008 BioCyc
Ensembl Genes ENSRNOG00000031356 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051625 ENTREZGENE
  ENSRNOT00000051625.5 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene 405940 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5as1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031356 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt D3ZJD9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or5as1  olfactory receptor family 5 subfamily AS member 1  Olr544  olfactory receptor 544  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr544  olfactory receptor 544   Olr544_predicted  olfactory receptor 544 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr544_predicted  olfactory receptor 544 (predicted)      Symbol and Name status set to approved 70820 APPROVED