Or11n2 (olfactory receptor family 11 subfamily N member 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Or11n2 (olfactory receptor family 11 subfamily N member 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or11n2
Name: olfactory receptor family 11 subfamily N member 2
RGD ID: 1332669
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane; INTERACTS WITH bisphenol A.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1766; olfactory receptor gene Olr1766; olfactory receptor Olr1766; Olr1766; ratchrX-136465174-136464242_ORF
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X134,047,215 - 134,048,147 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX134,047,215 - 134,048,147 (-)EnsemblGRCr8
mRatBN7.2X129,169,388 - 129,170,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX129,169,388 - 129,170,320 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX131,288,836 - 131,289,768 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X134,865,892 - 134,866,824 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X132,393,380 - 132,394,312 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X136,892,138 - 136,893,070 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX136,892,138 - 136,893,070 (-)Ensemblrn6Rnor6.0
Rnor_5.0X136,955,880 - 136,956,812 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X136,390,809 - 136,391,741 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX128,099,344 - 128,100,276 (-)NCBICelera
RGSC_v3.1X136,464,241 - 136,465,174 (-)NCBI
Cytogenetic MapXq36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in Or11n2
8 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:69
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000050717
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X120028026141353710Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X120028026141353710Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000050717   ⟹   ENSRNOP00000040031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX134,047,215 - 134,048,147 (-)Ensembl
mRatBN7.2 EnsemblX129,169,388 - 129,170,320 (-)Ensembl
Rnor_6.0 EnsemblX136,892,138 - 136,893,070 (-)Ensembl
RefSeq Acc Id: NM_001000490   ⟹   NP_001000490
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X134,047,215 - 134,048,147 (-)NCBI
mRatBN7.2X129,169,388 - 129,170,320 (-)NCBI
Rnor_6.0X136,892,138 - 136,893,070 (-)NCBI
Rnor_5.0X136,955,880 - 136,956,812 (-)NCBI
RGSC_v3.4X136,390,809 - 136,391,741 (-)RGD
CeleraX128,099,344 - 128,100,276 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040031
  ENSRNOP00000040031.2
RefSeq Acc Id: NP_001000490   ⟸   NM_001000490
- UniProtKB: D3ZAW9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000040031   ⟸   ENSRNOT00000050717
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAW9-F1-model_v2 AlphaFold D3ZAW9 1-310 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1332669 AgrOrtholog
BioCyc Gene G2FUF-1112 BioCyc
Ensembl Genes ENSRNOG00000037506 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050717 ENTREZGENE
  ENSRNOT00000050717.4 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR1 UniProtKB/TrEMBL
KEGG Report rno:302823 UniProtKB/TrEMBL
NCBI Gene 302823 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or11n2 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037506 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt D3ZAW9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or11n2  olfactory receptor family 11 subfamily N member 2  Olr1766  olfactory receptor 1766  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1766  olfactory receptor 1766   Olr1766_predicted  olfactory receptor 1766 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1766_predicted  olfactory receptor 1766 (predicted)      Symbol and Name status set to approved 70820 APPROVED