Or10j27 (olfactory receptor family 10 subfamily J member 27) - Rat Genome Database

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Gene: Or10j27 (olfactory receptor family 10 subfamily J member 27) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or10j27
Name: olfactory receptor family 10 subfamily J member 27
RGD ID: 1332648
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred); INTERACTS WITH copper atom; copper(0); thioacetamide
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1579; olfactory receptor gene Olr1579; olfactory receptor Olr1579; Olr1579
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,122,411 - 88,123,343 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1388,122,411 - 88,123,343 (-)EnsemblGRCr8
mRatBN7.21385,590,082 - 85,591,014 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,587,614 - 85,596,910 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1388,095,012 - 88,095,944 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01389,495,326 - 89,496,258 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,679,999 - 86,680,931 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01391,637,729 - 91,638,661 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1391,637,729 - 91,638,661 (-)Ensemblrn6Rnor6.0
Rnor_5.01396,152,147 - 96,153,079 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41389,335,029 - 89,335,961 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1385,194,769 - 85,195,701 (-)NCBICelera
RGSC_v3.11389,523,912 - 89,524,845 (-)NCBI
Cytogenetic Map13q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or10j27
6 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:27
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000045429
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat


Expression

RNA-SEQ Expression

circulatory system
ectoderm
endoderm
mesenchyme
mesoderm
musculoskeletal system
nervous system
respiratory system
1 7 4 2 2 1 6 4

Sequence


Ensembl Acc Id: ENSRNOT00000045429   ⟹   ENSRNOP00000045840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1391,637,729 - 91,638,661 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000045565   ⟹   ENSRNOP00000041815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1385,589,872 - 85,596,910 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096933   ⟹   ENSRNOP00000080209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1385,588,356 - 85,595,249 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105601   ⟹   ENSRNOP00000097900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1385,587,773 - 85,596,007 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105920   ⟹   ENSRNOP00000083697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1385,587,614 - 85,596,910 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110495   ⟹   ENSRNOP00000078401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1385,587,614 - 85,596,910 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121707   ⟹   ENSRNOP00000107334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1388,122,411 - 88,123,343 (-)Ensembl
RefSeq Acc Id: NM_001000078   ⟹   NP_001000078
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81388,122,411 - 88,123,343 (-)NCBI
mRatBN7.21385,590,082 - 85,591,014 (-)NCBI
Rnor_6.01391,637,729 - 91,638,661 (-)NCBI
Rnor_5.01396,152,147 - 96,153,079 (-)NCBI
RGSC_v3.41389,335,029 - 89,335,961 (-)RGD
Celera1385,194,769 - 85,195,701 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000078 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL94731 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000107334
  ENSRNOP00000107334.1
RefSeq Acc Id: NP_001000078   ⟸   NM_001000078
- UniProtKB: A0A8I6ANT0 (UniProtKB/TrEMBL),   A6JG75 (UniProtKB/TrEMBL),   D3ZNH5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045840   ⟸   ENSRNOT00000045429
Ensembl Acc Id: ENSRNOP00000083697   ⟸   ENSRNOT00000105920
Ensembl Acc Id: ENSRNOP00000097900   ⟸   ENSRNOT00000105601
Ensembl Acc Id: ENSRNOP00000041815   ⟸   ENSRNOT00000045565
Ensembl Acc Id: ENSRNOP00000078401   ⟸   ENSRNOT00000110495
Ensembl Acc Id: ENSRNOP00000080209   ⟸   ENSRNOT00000096933
Ensembl Acc Id: ENSRNOP00000107334   ⟸   ENSRNOT00000121707
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A178-F1-model_v2 AlphaFold D4A178 1-310 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1332648 AgrOrtholog
BioCyc Gene G2FUF-17285 BioCyc
Ensembl Genes ENSRNOG00000049212 Ensembl
  ENSRNOG00000064078 Ensembl
  ENSRNOG00000072991 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000121707 ENTREZGENE
  ENSRNOT00000121707.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:289239 UniProtKB/TrEMBL
NCBI Gene 289239 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or10j27 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000049212 RatGTEx
  ENSRNOG00000064078 RatGTEx
  ENSRNOG00000072991 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6ANT0 ENTREZGENE, UniProtKB/TrEMBL
  A6JG75 ENTREZGENE, UniProtKB/TrEMBL
  D3ZNH5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or10j27  olfactory receptor family 10 subfamily J member 27  Olr1579  olfactory receptor 1579  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1579  olfactory receptor 1579   Olr1579_predicted  olfactory receptor 1579 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1579_predicted  olfactory receptor 1579 (predicted)      Symbol and Name status set to approved 70820 APPROVED