Itfg2 (integrin alpha FG-GAP repeat containing 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Itfg2 (integrin alpha FG-GAP repeat containing 2) Rattus norvegicus
Analyze
Symbol: Itfg2
Name: integrin alpha FG-GAP repeat containing 2
RGD ID: 1311944
Description: Predicted to be involved in cellular response to amino acid starvation; cellular response to glucose starvation; and negative regulation of TORC1 signaling. Predicted to act upstream of or within germinal center B cell differentiation. Predicted to be located in cytosol; lysosomal membrane; and nucleoplasm. Predicted to be part of KICSTOR complex. Orthologous to human ITFG2 (integrin alpha FG-GAP repeat containing 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: integrin-alpha FG-GAP repeat-containing protein 2; KICSTOR complex protein ITFG2; LOC362441; RGD1311944; similar to expressed sequence AI646725
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84163,371,125 - 163,384,676 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4163,338,702 - 163,384,367 (-)EnsemblGRCr8
mRatBN7.24161,684,249 - 161,698,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4161,684,249 - 161,698,422 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4167,914,670 - 167,927,901 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04163,697,608 - 163,710,839 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04162,331,644 - 162,344,875 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04161,730,643 - 161,744,281 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4161,730,641 - 161,743,896 (-)Ensemblrn6Rnor6.0
Rnor_5.04226,936,184 - 226,949,437 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44165,429,677 - 165,442,930 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4150,386,454 - 150,399,708 (-)NCBICelera
RGSC_v3.14165,675,379 - 165,690,062 (-)NCBI
Cytogenetic Map4q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23997217   PMID:28199306  


Genomics

Comparative Map Data
Itfg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84163,371,125 - 163,384,676 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4163,338,702 - 163,384,367 (-)EnsemblGRCr8
mRatBN7.24161,684,249 - 161,698,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4161,684,249 - 161,698,422 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4167,914,670 - 167,927,901 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04163,697,608 - 163,710,839 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04162,331,644 - 162,344,875 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04161,730,643 - 161,744,281 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4161,730,641 - 161,743,896 (-)Ensemblrn6Rnor6.0
Rnor_5.04226,936,184 - 226,949,437 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44165,429,677 - 165,442,930 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4150,386,454 - 150,399,708 (-)NCBICelera
RGSC_v3.14165,675,379 - 165,690,062 (-)NCBI
Cytogenetic Map4q42NCBI
ITFG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38122,812,668 - 2,859,791 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl122,812,622 - 2,859,791 (+)Ensemblhg38GRCh38
GRCh37122,921,834 - 2,968,957 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,792,124 - 2,804,367 (+)NCBIBuild 36Build 36hg18NCBI36
Celera124,535,723 - 4,548,173 (+)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef122,779,353 - 2,791,802 (+)NCBIHuRef
CHM1_1122,921,024 - 2,933,474 (+)NCBICHM1_1
T2T-CHM13v2.0122,818,668 - 2,865,802 (+)NCBIT2T-CHM13v2.0
Itfg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396128,386,407 - 128,401,873 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6128,386,407 - 128,401,894 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386128,409,047 - 128,424,927 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6128,409,444 - 128,424,931 (-)Ensemblmm10GRCm38
MGSCv376128,359,462 - 128,374,928 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366128,375,063 - 128,390,529 (-)NCBIMGSCv36mm8
Celera6130,086,278 - 130,101,735 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map662.99NCBI
Itfg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542918,356,642 - 18,372,928 (+)Ensembl
ChiLan1.0NW_00495542918,356,642 - 18,372,928 (+)NCBIChiLan1.0ChiLan1.0
ITFG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2108,362,725 - 8,392,250 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1128,359,607 - 8,389,003 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0122,933,227 - 2,980,509 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1122,865,297 - 2,889,752 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl122,865,297 - 2,877,555 (+)EnsemblpanPan2panpan1.1
ITFG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12741,933,741 - 41,944,464 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2741,934,575 - 41,944,472 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha274,739,698 - 4,750,438 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02742,291,904 - 42,302,645 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2742,291,904 - 42,302,596 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12742,233,426 - 42,244,162 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02742,203,098 - 42,213,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,099,392 - 4,110,145 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Itfg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945106,025,311 - 106,039,230 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366063,144,602 - 3,158,890 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366063,144,616 - 3,158,825 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITFG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl567,291,772 - 67,305,607 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1567,292,901 - 67,306,208 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,579,204 - 69,592,320 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ITFG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,877,864 - 2,891,223 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,877,997 - 2,890,477 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660635,425,387 - 5,438,866 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itfg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624860147,308 - 180,132 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624860147,476 - 175,754 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Itfg2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1619,278,668 - 19,291,612 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Itfg2
109 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:133
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000064174, ENSRNOT00000064215
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 91 59 6 355 191 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064174   ⟹   ENSRNOP00000061320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,371,821 - 163,384,318 (-)Ensembl
mRatBN7.2 Ensembl4161,685,731 - 161,698,231 (-)Ensembl
Rnor_6.0 Ensembl4161,731,350 - 161,743,847 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000064215   ⟹   ENSRNOP00000061416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,371,139 - 163,384,367 (-)Ensembl
mRatBN7.2 Ensembl4161,685,037 - 161,698,270 (-)Ensembl
Rnor_6.0 Ensembl4161,730,641 - 161,743,896 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084173   ⟹   ENSRNOP00000071209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,353,452 - 163,384,367 (-)Ensembl
mRatBN7.2 Ensembl4161,685,743 - 161,698,233 (-)Ensembl
Rnor_6.0 Ensembl4161,731,249 - 161,743,890 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095809   ⟹   ENSRNOP00000080090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,338,702 - 163,384,367 (-)Ensembl
mRatBN7.2 Ensembl4161,684,249 - 161,698,422 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100468   ⟹   ENSRNOP00000097656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,371,139 - 163,384,258 (-)Ensembl
mRatBN7.2 Ensembl4161,684,249 - 161,698,171 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104890   ⟹   ENSRNOP00000092886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,371,139 - 163,384,268 (-)Ensembl
mRatBN7.2 Ensembl4161,684,249 - 161,698,263 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108007   ⟹   ENSRNOP00000091498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,371,139 - 163,381,851 (-)Ensembl
mRatBN7.2 Ensembl4161,684,249 - 161,698,263 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115269   ⟹   ENSRNOP00000084745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,371,139 - 163,384,367 (-)Ensembl
mRatBN7.2 Ensembl4161,684,249 - 161,698,263 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000166322   ⟹   ENSRNOP00000108689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4163,339,338 - 163,384,367 (-)Ensembl
RefSeq Acc Id: NM_001108648   ⟹   NP_001102118
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,371,125 - 163,384,367 (-)NCBI
mRatBN7.24161,685,035 - 161,698,280 (-)NCBI
Rnor_6.04161,730,643 - 161,743,896 (-)NCBI
Rnor_5.04226,936,184 - 226,949,437 (-)NCBI
RGSC_v3.44165,429,677 - 165,442,930 (-)RGD
Celera4150,386,454 - 150,399,708 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237410   ⟹   XP_006237472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,371,127 - 163,384,676 (-)NCBI
mRatBN7.24161,684,249 - 161,698,315 (-)NCBI
Rnor_6.04161,730,654 - 161,744,281 (-)NCBI
Rnor_5.04226,936,184 - 226,949,437 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063286362   ⟹   XP_063142432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,371,127 - 163,384,676 (-)NCBI
RefSeq Acc Id: XM_063286363   ⟹   XP_063142433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,371,127 - 163,384,676 (-)NCBI
RefSeq Acc Id: XM_063286364   ⟹   XP_063142434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,371,127 - 163,384,357 (-)NCBI
RefSeq Acc Id: XM_063286366   ⟹   XP_063142436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,371,127 - 163,384,357 (-)NCBI
RefSeq Acc Id: XM_063286367   ⟹   XP_063142437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,371,127 - 163,378,804 (-)NCBI
RefSeq Acc Id: NP_001102118   ⟸   NM_001108648
- UniProtKB: A0A8I6AHW3 (UniProtKB/TrEMBL),   A6IM12 (UniProtKB/TrEMBL),   D4A716 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237472   ⟸   XM_006237410
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A0S3 (UniProtKB/TrEMBL),   D4A716 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071209   ⟸   ENSRNOT00000084173
Ensembl Acc Id: ENSRNOP00000061416   ⟸   ENSRNOT00000064215
Ensembl Acc Id: ENSRNOP00000061320   ⟸   ENSRNOT00000064174
Ensembl Acc Id: ENSRNOP00000084745   ⟸   ENSRNOT00000115269
Ensembl Acc Id: ENSRNOP00000091498   ⟸   ENSRNOT00000108007
Ensembl Acc Id: ENSRNOP00000092886   ⟸   ENSRNOT00000104890
Ensembl Acc Id: ENSRNOP00000080090   ⟸   ENSRNOT00000095809
Ensembl Acc Id: ENSRNOP00000097656   ⟸   ENSRNOT00000100468
RefSeq Acc Id: XP_063142433   ⟸   XM_063286363
- Peptide Label: isoform X2
- UniProtKB: D4A716 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142432   ⟸   XM_063286362
- Peptide Label: isoform X1
- UniProtKB: D4A716 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142436   ⟸   XM_063286366
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZNV3 (UniProtKB/TrEMBL),   D4A716 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142434   ⟸   XM_063286364
- Peptide Label: isoform X3
- UniProtKB: D4A716 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142437   ⟸   XM_063286367
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000108689   ⟸   ENSRNOT00000166322

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZW3-F1-model_v2 AlphaFold A0A0G2JZW3 1-443 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693439
Promoter ID:EPDNEW_R3950
Type:initiation region
Name:Itfg2_1
Description:integrin alpha FG-GAP repeat containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04161,743,863 - 161,743,923EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311944 AgrOrtholog
BioCyc Gene G2FUF-42859 BioCyc
Ensembl Genes ENSRNOG00000006264 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064174.4 UniProtKB/TrEMBL
  ENSRNOT00000064215 ENTREZGENE
  ENSRNOT00000064215.5 UniProtKB/TrEMBL
  ENSRNOT00000084173.3 UniProtKB/TrEMBL
  ENSRNOT00000095809.2 UniProtKB/TrEMBL
  ENSRNOT00000100468.2 UniProtKB/TrEMBL
  ENSRNOT00000104890 ENTREZGENE
  ENSRNOT00000104890.2 UniProtKB/TrEMBL
  ENSRNOT00000108007.2 UniProtKB/TrEMBL
  ENSRNOT00000115269 ENTREZGENE
  ENSRNOT00000115269.2 UniProtKB/TrEMBL
  ENSRNOT00000166322.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.130.10.130 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9088606 IMAGE-MGC_LOAD
InterPro Integrin_alpha_N UniProtKB/TrEMBL
  Itfg2 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:362441 UniProtKB/TrEMBL
MGC_CLONE MGC:187852 IMAGE-MGC_LOAD
NCBI Gene 362441 ENTREZGENE
PANTHER KICSTOR COMPLEX PROTEIN ITFG2 UniProtKB/TrEMBL
  PTHR16317 UniProtKB/TrEMBL
Pfam Itfg2 UniProtKB/TrEMBL
PhenoGen Itfg2 PhenoGen
RatGTEx ENSRNOG00000006264 RatGTEx
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF69318 UniProtKB/TrEMBL
UniProt A0A0G2JZW3_RAT UniProtKB/TrEMBL
  A0A8I5ZNV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0S3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AG87_RAT UniProtKB/TrEMBL
  A0A8I6AHW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B624_RAT UniProtKB/TrEMBL
  A0ABK0LWZ2_RAT UniProtKB/TrEMBL
  A6IM11_RAT UniProtKB/TrEMBL
  A6IM12 ENTREZGENE, UniProtKB/TrEMBL
  B0BN77_RAT UniProtKB/TrEMBL
  D4A716 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Itfg2  integrin alpha FG-GAP repeat containing 2  RGD1311944_predicted  similar to expressed sequence AI646725 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1311944_predicted  similar to expressed sequence AI646725 (predicted)  LOC362441_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362441_predicted  similar to expressed sequence AI646725 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL