Smarcd3 (SWI/SNF related BAF chromatin remodeling complex subunit D3) - Rat Genome Database

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Gene: Smarcd3 (SWI/SNF related BAF chromatin remodeling complex subunit D3) Rattus norvegicus
Analyze
Symbol: Smarcd3
Name: SWI/SNF related BAF chromatin remodeling complex subunit D3 (Ensembl:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3)
RGD ID: 1311869
Description: Enables chromatin binding activity. Involved in positive regulation of G2/M transition of mitotic cell cycle and positive regulation of smooth muscle cell differentiation. Predicted to be located in chromatin and cytoplasm. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Predicted to be active in nucleus. Orthologous to human SMARCD3 (SWI/SNF related BAF chromatin remodeling complex subunit D3); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrolein.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC296732; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,441,142 - 11,472,781 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl411,441,157 - 11,472,781 (+)EnsemblGRCr8
mRatBN7.2410,548,693 - 10,580,334 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,548,751 - 10,580,326 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx415,694,838 - 15,726,423 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,515,036 - 11,546,621 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.049,866,818 - 9,898,403 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.047,076,710 - 7,108,334 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,076,759 - 7,108,328 (+)Ensemblrn6Rnor6.0
Rnor_5.047,089,230 - 7,120,851 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.445,928,215 - 5,959,791 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera46,164,700 - 6,196,312 (+)NCBICelera
RGSC_v3.145,928,214 - 5,959,790 (+)NCBI
Cytogenetic Map4q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA,ISO)
cytoplasm  (ISO)
nBAF complex  (IEA,ISO)
npBAF complex  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
SWI/SNF complex  (IBA,IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
3. SWI/SNF chromatin remodeling enzymes are associated with cardiac hypertrophy in a genetic rat model of hypertension. Mehrotra A, etal., J Cell Physiol. 2013 Dec;228(12):2337-42. doi: 10.1002/jcp.24404.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
10. TGFbeta1-induced Baf60c regulates both smooth muscle cell commitment and quiescence. Sohni A, etal., PLoS One. 2012;7(10):e47629. doi: 10.1371/journal.pone.0047629. Epub 2012 Oct 26.
Additional References at PubMed
PMID:8804307   PMID:8895581   PMID:11726552   PMID:12477932   PMID:14701856   PMID:15525990   PMID:17363140   PMID:17519332   PMID:17640523   PMID:18816825   PMID:23785148   PMID:24335282  
PMID:29374058  


Genomics

Comparative Map Data
Smarcd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,441,142 - 11,472,781 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl411,441,157 - 11,472,781 (+)EnsemblGRCr8
mRatBN7.2410,548,693 - 10,580,334 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,548,751 - 10,580,326 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx415,694,838 - 15,726,423 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,515,036 - 11,546,621 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.049,866,818 - 9,898,403 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.047,076,710 - 7,108,334 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,076,759 - 7,108,328 (+)Ensemblrn6Rnor6.0
Rnor_5.047,089,230 - 7,120,851 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.445,928,215 - 5,959,791 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera46,164,700 - 6,196,312 (+)NCBICelera
RGSC_v3.145,928,214 - 5,959,790 (+)NCBI
Cytogenetic Map4q11NCBI
SMARCD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,238,780 - 151,277,149 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,238,764 - 151,277,896 (-)Ensemblhg38GRCh38
GRCh377150,935,866 - 150,974,235 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,566,992 - 150,605,164 (-)NCBIBuild 36Build 36hg18NCBI36
Build 347150,373,707 - 150,411,879NCBI
Celera7145,493,418 - 145,531,599 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,747,599 - 144,785,679 (-)NCBIHuRef
CHM1_17150,944,462 - 150,982,655 (-)NCBICHM1_1
T2T-CHM13v2.07152,411,900 - 152,450,299 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,265,596 - 150,303,777 (-)NCBI
Smarcd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,797,620 - 24,829,649 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,795,816 - 24,829,409 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38524,592,622 - 24,624,456 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,590,818 - 24,624,411 (-)Ensemblmm10GRCm38
MGSCv37524,098,440 - 24,107,820 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36524,102,687 - 24,112,067 (-)NCBIMGSCv36mm8
Celera521,542,266 - 21,551,625 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.93NCBI
Smarcd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554915,651,597 - 5,657,554 (-)Ensembl
ChiLan1.0NW_0049554915,653,284 - 5,657,546 (-)NCBIChiLan1.0ChiLan1.0
SMARCD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,660,933 - 187,699,261 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,671,197 - 39,709,524 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,825,864 - 142,864,159 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,977,708 - 155,013,783 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,977,858 - 155,013,681 (-)EnsemblpanPan2panpan1.1
SMARCD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,279,295 - 15,311,210 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,279,309 - 15,417,027 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1615,887,117 - 15,918,657 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01617,001,502 - 17,033,029 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1617,001,686 - 17,032,995 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,373,508 - 15,405,014 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,955,205 - 15,986,728 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01616,006,005 - 16,037,553 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Smarcd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,227,647 - 6,260,247 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,643,075 - 6,675,883 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,643,182 - 6,675,708 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl185,958,506 - 5,989,114 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1185,958,466 - 5,989,120 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,276,523 - 6,286,254 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,423,755 - 119,461,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,423,885 - 119,460,038 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607215,394,605 - 15,433,302 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarcd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,379,707 - 5,406,474 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248005,378,364 - 5,406,474 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Smarcd3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16153,791,181 - 153,800,644 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Smarcd3
358 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:101
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000066598
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4128392287Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4128392287Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4128392287Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4842855130449094Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
GDB:4584943  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8411,471,425 - 11,471,628 (+)Marker Load Pipeline
mRatBN7.2410,578,978 - 10,579,181 (+)MAPPERmRatBN7.2
Rnor_6.047,106,979 - 7,107,181NCBIRnor6.0
Rnor_5.047,119,496 - 7,119,698UniSTSRnor5.0
RGSC_v3.445,958,441 - 5,958,643UniSTSRGSC3.4
Celera46,194,962 - 6,195,164UniSTS
Cytogenetic Map4q11UniSTS
RH138159  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2410,555,863 - 10,556,046 (+)MAPPERmRatBN7.2
Rnor_6.047,083,872 - 7,084,054NCBIRnor6.0
Rnor_5.047,096,383 - 7,096,565UniSTSRnor5.0
RGSC_v3.445,935,328 - 5,935,510UniSTSRGSC3.4
Celera46,171,813 - 6,171,995UniSTS
RH 3.4 Map414.0UniSTS
Cytogenetic Map4q11UniSTS
G33154  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2410,580,603 - 10,580,746 (+)MAPPERmRatBN7.2
Rnor_6.047,108,604 - 7,108,746NCBIRnor6.0
Rnor_5.047,121,121 - 7,121,263UniSTSRnor5.0
RGSC_v3.445,960,066 - 5,960,208UniSTSRGSC3.4
Celera46,196,587 - 6,196,729UniSTS
Cytogenetic Map4q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 71 59 6 335 171 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000066598   ⟹   ENSRNOP00000061137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl411,441,157 - 11,472,777 (+)Ensembl
mRatBN7.2 Ensembl410,548,751 - 10,580,326 (+)Ensembl
Rnor_6.0 Ensembl47,076,759 - 7,108,328 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115205   ⟹   ENSRNOP00000080730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl411,463,261 - 11,472,777 (+)Ensembl
mRatBN7.2 Ensembl410,570,492 - 10,580,326 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116591   ⟹   ENSRNOP00000085708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl411,458,680 - 11,472,781 (+)Ensembl
mRatBN7.2 Ensembl410,573,311 - 10,580,326 (+)Ensembl
RefSeq Acc Id: NM_001011966   ⟹   NP_001011966
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8411,441,200 - 11,472,776 (+)NCBI
mRatBN7.2410,548,751 - 10,580,329 (+)NCBI
Rnor_6.047,076,759 - 7,108,329 (+)NCBI
Rnor_5.047,089,230 - 7,120,851 (+)NCBI
RGSC_v3.445,928,215 - 5,959,791 (+)RGD
Celera46,164,700 - 6,196,312 (+)RGD
Sequence:
RefSeq Acc Id: NM_001415835   ⟹   NP_001402764
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8411,463,276 - 11,472,781 (+)NCBI
mRatBN7.2410,570,827 - 10,580,334 (+)NCBI
RefSeq Acc Id: XM_006235888   ⟹   XP_006235950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8411,462,980 - 11,472,778 (+)NCBI
mRatBN7.2410,570,773 - 10,580,334 (+)NCBI
Rnor_6.047,098,826 - 7,108,334 (+)NCBI
Rnor_5.047,089,230 - 7,120,851 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107216   ⟹   XP_038963144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8411,462,980 - 11,472,778 (+)NCBI
mRatBN7.2410,570,773 - 10,580,334 (+)NCBI
RefSeq Acc Id: XM_063285692   ⟹   XP_063141762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8411,441,142 - 11,472,778 (+)NCBI
RefSeq Acc Id: NP_001011966   ⟸   NM_001011966
- Peptide Label: isoform 1
- UniProtKB: Q5U3Y2 (UniProtKB/TrEMBL),   F7FMF4 (UniProtKB/TrEMBL),   A0A8I6A286 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235950   ⟸   XM_006235888
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A286 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061137   ⟸   ENSRNOT00000066598
RefSeq Acc Id: XP_038963144   ⟸   XM_039107216
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A286 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085708   ⟸   ENSRNOT00000116591
Ensembl Acc Id: ENSRNOP00000080730   ⟸   ENSRNOT00000115205
RefSeq Acc Id: NP_001402764   ⟸   NM_001415835
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZQQ2 (UniProtKB/TrEMBL),   A6K534 (UniProtKB/TrEMBL),   A0A8I6A286 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141762   ⟸   XM_063285692
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A286 (UniProtKB/TrEMBL)
Protein Domains
DM2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U3Y2-F1-model_v2 AlphaFold Q5U3Y2 1-470 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692786
Promoter ID:EPDNEW_R3308
Type:initiation region
Name:Smarcd3_1
Description:SWI/SNF related, matrix associated, actin dependent regulatorof chromatin, subfamily d, member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.047,076,761 - 7,076,821EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311869 AgrOrtholog
BioCyc Gene G2FUF-46054 BioCyc
Ensembl Genes ENSRNOG00000010077 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066598 ENTREZGENE
  ENSRNOT00000066598.4 UniProtKB/TrEMBL
  ENSRNOT00000115205 ENTREZGENE
  ENSRNOT00000115205.2 UniProtKB/TrEMBL
  ENSRNOT00000116591 ENTREZGENE
  ENSRNOT00000116591.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.245.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7107899 IMAGE-MGC_LOAD
InterPro SMARCD3 UniProtKB/TrEMBL
  SWIB_domain UniProtKB/TrEMBL
  SWIB_MDM2_dom_sf UniProtKB/TrEMBL
  SWIB_MDM2_domain UniProtKB/TrEMBL
KEGG Report rno:296732 UniProtKB/TrEMBL
MGC_CLONE MGC:105828 IMAGE-MGC_LOAD
NCBI Gene 296732 ENTREZGENE
PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D UniProtKB/TrEMBL
Pfam SWIB UniProtKB/TrEMBL
PhenoGen Smarcd3 PhenoGen
PROSITE SWIB_MDM2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010077 RatGTEx
SMART SWIB UniProtKB/TrEMBL
Superfamily-SCOP MDM2 UniProtKB/TrEMBL
UniProt A0A8I5ZQQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A286 ENTREZGENE, UniProtKB/TrEMBL
  A6K534 ENTREZGENE, UniProtKB/TrEMBL
  F7FMF4 ENTREZGENE, UniProtKB/TrEMBL
  Q5U3Y2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-08 Smarcd3  SWI/SNF related BAF chromatin remodeling complex subunit D3  Smarcd3  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Smarcd3  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3  Smarcd3_predicted  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Smarcd3_predicted  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED