Nab2 (Ngfi-A binding protein 2) - Rat Genome Database

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Gene: Nab2 (Ngfi-A binding protein 2) Rattus norvegicus
Analyze
Symbol: Nab2
Name: Ngfi-A binding protein 2
RGD ID: 1311712
Description: Predicted to enable identical protein binding activity and transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within several processes, including endochondral ossification; negative regulation of transcription by RNA polymerase III; and nervous system development. Predicted to be active in nucleus. Orthologous to human NAB2 (NGFI-A binding protein 2); INTERACTS WITH 1,2-dimethylhydrazine; 1,3-dinitrobenzene; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: NGFI-A-binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,382,863 - 65,389,527 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl765,382,863 - 65,389,255 (-)EnsemblGRCr8
mRatBN7.2763,497,589 - 63,504,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,497,589 - 63,503,989 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx765,386,837 - 65,393,229 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,589,127 - 67,595,520 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,390,417 - 67,396,822 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,963,580 - 70,971,471 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,961,575 - 70,969,905 (-)Ensemblrn6Rnor6.0
Rnor_5.0771,135,886 - 71,143,765 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4767,642,321 - 67,648,713 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera760,637,039 - 60,643,441 (-)NCBICelera
RGSC_v3.1767,663,919 - 67,669,962 (-)NCBI
Cytogenetic Map7q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
afimoxifene  (ISO)
all-trans-retinoic acid  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
chlorpyrifos  (ISO)
cholesterol  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
fenamidone  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
hexamethylene diisocyanate  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
leflunomide  (ISO)
methamphetamine  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylephrine  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
SCH 23390  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Clusterin regulates ß-amyloid toxicity via Dickkopf-1-driven induction of the wnt-PCP-JNK pathway. Killick R, etal., Mol Psychiatry. 2014 Jan;19(1):88-98. doi: 10.1038/mp.2012.163. Epub 2012 Nov 20.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8668170   PMID:8889548   PMID:12025859   PMID:16136673   PMID:22082260   PMID:25416956  


Genomics

Comparative Map Data
Nab2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,382,863 - 65,389,527 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl765,382,863 - 65,389,255 (-)EnsemblGRCr8
mRatBN7.2763,497,589 - 63,504,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,497,589 - 63,503,989 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx765,386,837 - 65,393,229 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,589,127 - 67,595,520 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,390,417 - 67,396,822 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,963,580 - 70,971,471 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,961,575 - 70,969,905 (-)Ensemblrn6Rnor6.0
Rnor_5.0771,135,886 - 71,143,765 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4767,642,321 - 67,648,713 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera760,637,039 - 60,643,441 (-)NCBICelera
RGSC_v3.1767,663,919 - 67,669,962 (-)NCBI
Cytogenetic Map7q22NCBI
NAB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,089,114 - 57,095,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,089,014 - 57,095,476 (+)Ensemblhg38GRCh38
GRCh371257,482,897 - 57,489,259 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,768,944 - 55,775,526 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341255,769,156 - 55,775,525NCBI
Celera1257,136,605 - 57,143,187 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,521,179 - 54,527,665 (+)NCBIHuRef
CHM1_11257,450,361 - 57,456,943 (+)NCBICHM1_1
T2T-CHM13v2.01257,056,986 - 57,063,348 (+)NCBIT2T-CHM13v2.0
Nab2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,496,787 - 127,502,572 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,496,787 - 127,504,437 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3810127,660,918 - 127,666,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,660,918 - 127,668,568 (-)Ensemblmm10GRCm38
MGSCv3710127,097,974 - 127,103,759 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610127,063,868 - 127,069,627 (-)NCBIMGSCv36mm8
Celera10130,053,279 - 130,059,070 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.6NCBI
Nab2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,826,458 - 4,832,487 (+)Ensembl
ChiLan1.0NW_0049554584,826,464 - 4,832,487 (+)NCBIChiLan1.0ChiLan1.0
NAB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,246,556 - 37,253,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,243,326 - 37,249,885 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1232,085,031 - 32,091,498 (-)EnsemblpanPan2panpan1.1
NAB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,226,626 - 1,232,575 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,226,415 - 1,231,810 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha101,290,586 - 1,296,444 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0101,237,205 - 1,243,063 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,237,142 - 1,243,073 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,213,906 - 1,219,764 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,455,916 - 1,461,773 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,580,762 - 1,586,620 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nab2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,572,772 - 57,579,031 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,291,446 - 1,299,118 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,291,251 - 1,297,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,400,277 - 22,406,419 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1522,400,275 - 22,406,424 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,221,637 - 24,227,800 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,998,467 - 53,005,053 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,000,822 - 53,004,296 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037192,967,401 - 192,973,985 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nab2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,847,394 - 10,852,963 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480210,847,728 - 10,852,002 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nab2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11206,108,038 - 206,113,950 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nab2
15 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:129
Interacting mature miRNAs:141
Transcripts:ENSRNOT00000057745
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74913799967614020Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
RH128335  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,498,529 - 63,498,710 (+)MAPPERmRatBN7.2
Rnor_6.0770,964,521 - 70,964,701NCBIRnor6.0
Rnor_5.0771,136,827 - 71,137,007UniSTSRnor5.0
RGSC_v3.4767,643,262 - 67,643,442UniSTSRGSC3.4
Celera760,637,988 - 60,638,168UniSTS
Cytogenetic Map7q22UniSTS
AI451907  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,498,755 - 63,498,869 (+)MAPPERmRatBN7.2
Rnor_6.0770,964,747 - 70,964,860NCBIRnor6.0
Rnor_5.0771,137,053 - 71,137,166UniSTSRnor5.0
RGSC_v3.4767,643,488 - 67,643,601UniSTSRGSC3.4
Celera760,638,214 - 60,638,327UniSTS
Cytogenetic Map7q22UniSTS
UniSTS:224451  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8765,382,937 - 65,383,107 (+)Marker Load Pipeline
mRatBN7.2763,497,663 - 63,497,833 (+)MAPPERmRatBN7.2
Rnor_6.0770,963,655 - 70,963,824NCBIRnor6.0
Rnor_5.0771,135,961 - 71,136,130UniSTSRnor5.0
RGSC_v3.4767,642,396 - 67,642,565UniSTSRGSC3.4
Celera760,637,114 - 60,637,291UniSTS
Cytogenetic Map7q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000057745   ⟹   ENSRNOP00000054557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl765,383,440 - 65,389,255 (-)Ensembl
mRatBN7.2 Ensembl763,498,545 - 63,503,989 (-)Ensembl
Rnor_6.0 Ensembl770,961,575 - 70,969,905 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112238   ⟹   ENSRNOP00000095242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl765,382,863 - 65,389,255 (-)Ensembl
mRatBN7.2 Ensembl763,497,589 - 63,503,981 (-)Ensembl
RefSeq Acc Id: NM_001134874   ⟹   NP_001128346
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,382,863 - 65,389,255 (-)NCBI
mRatBN7.2763,497,589 - 63,503,981 (-)NCBI
Rnor_6.0770,963,580 - 70,969,972 (-)NCBI
Rnor_5.0771,135,886 - 71,143,765 (-)NCBI
RGSC_v3.4767,642,321 - 67,648,713 (-)RGD
Celera760,637,039 - 60,643,441 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241459   ⟹   XP_006241521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,383,731 - 65,389,527 (-)NCBI
mRatBN7.2763,498,457 - 63,504,105 (-)NCBI
Rnor_6.0770,964,448 - 70,971,471 (-)NCBI
Rnor_5.0771,135,886 - 71,143,765 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001128346 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241521 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16457 (Get FASTA)   NCBI Sequence Viewer  
  EDM16458 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000054557
  ENSRNOP00000054557.3
  ENSRNOP00000095242
  ENSRNOP00000095242.1
RefSeq Acc Id: NP_001128346   ⟸   NM_001134874
- UniProtKB: A0A8I6B288 (UniProtKB/TrEMBL),   A6HQW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241521   ⟸   XM_006241459
- Peptide Label: isoform X1
- UniProtKB: D4A4F4 (UniProtKB/TrEMBL),   A6HQW4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054557   ⟸   ENSRNOT00000057745
Ensembl Acc Id: ENSRNOP00000095242   ⟸   ENSRNOT00000112238
Protein Domains
NAB co-repressor   Nab N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4F4-F1-model_v2 AlphaFold D4A4F4 1-525 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695268
Promoter ID:EPDNEW_R5791
Type:single initiation site
Name:Nab2_1
Description:Ngfi-A binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0770,969,912 - 70,969,972EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311712 AgrOrtholog
BioCyc Gene G2FUF-33728 BioCyc
Ensembl Genes ENSRNOG00000008415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057745 ENTREZGENE
  ENSRNOT00000057745.5 UniProtKB/TrEMBL
  ENSRNOT00000112238 ENTREZGENE
  ENSRNOT00000112238.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  1.20.120.2010 UniProtKB/TrEMBL
InterPro NAB_co-repressor_cons_reg_2 UniProtKB/TrEMBL
  NAB_fam UniProtKB/TrEMBL
  Nab_N UniProtKB/TrEMBL
  NCD2_sf UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
KEGG Report rno:314910 UniProtKB/TrEMBL
NCBI Gene 314910 ENTREZGENE
PANTHER NGFI-A-BINDING PROTEIN 2 UniProtKB/TrEMBL
  PTHR12623 UniProtKB/TrEMBL
Pfam NCD1 UniProtKB/TrEMBL
  NCD2 UniProtKB/TrEMBL
PhenoGen Nab2 PhenoGen
RatGTEx ENSRNOG00000008415 RatGTEx
UniProt A0A8I6B288 ENTREZGENE, UniProtKB/TrEMBL
  A6HQW4 ENTREZGENE, UniProtKB/TrEMBL
  A6HQW5 ENTREZGENE, UniProtKB/TrEMBL
  D4A4F4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Nab2  Ngfi-A binding protein 2  Nab2_predicted  Ngfi-A binding protein 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Nab2_predicted  Ngfi-A binding protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED