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Gene: Ccdc51 (coiled-coil domain containing 51) Rattus norvegicus

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Symbol:

Ccdc51

Name:

coiled-coil domain containing 51

RGD ID:

1311466

Description:

Predicted to enable mitochondrial ATP-gated potassium channel activity. Predicted to be involved in cell volume homeostasis and mitochondrial potassium ion transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial ATP-gated potassium channel complex. Orthologous to human CCDC51 (coiled-coil domain containing 51); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil domain-containing protein 51; LOC316008; mitochondrial potassium channel; MITOK; RGD1311466; similar to RIKEN cDNA 5730568A12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC51 (coiled-coil domain containing 51)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ccdc51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ccdc51 (coiled-coil domain containing 51)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ccdc51 (coiled-coil domain containing 51)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC51 (coiled-coil domain containing 51)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc51 (coiled-coil domain containing 51)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZC477.3	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc51	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	118,601,002 - 118,619,943 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	118,601,019 - 118,619,943 (+)	Ensembl				GRCr8
mRatBN7.2	8	109,722,595 - 109,741,478 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,722,557 - 109,741,472 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	115,345,869 - 115,356,269 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	113,545,044 - 113,555,444 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	111,387,850 - 111,398,250 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	8	119,495,246 - 119,505,724 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	8	121,600,188 - 121,610,666 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	8	120,089,908 - 120,100,386 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	8	111,490,471 - 111,500,871 (+)	NCBI		F344_StmMcwi
Rnor_6.0	8	117,812,091 - 117,830,848 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,812,099 - 117,830,868 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	117,163,863 - 117,182,591 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	114,095,905 - 114,106,350 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	109,022,317 - 109,032,735 (+)	NCBI		Celera
RGSC_v3.1	8	114,115,359 - 114,125,801 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

fundus dystrophy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-colchicine (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

adenine (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

ethyl methanesulfonate (ISO)

etoposide (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydroxyurea (ISO)

methamphetamine (ISO)

methyl methanesulfonate (ISO)

mitomycin C (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

rotenone (ISO)

sodium arsenite (ISO)

Soman (EXP)

thioacetamide (EXP)

thiram (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell volume homeostasis (IEA,ISO)

mitochondrial potassium ion transmembrane transport (IEA,ISO)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

potassium ion transmembrane transport (IEA,ISO,ISS)

potassium ion transport (IEA)

Cellular Component

mitochondrial ATP-gated potassium channel complex (IEA,ISO,ISS)

mitochondrial inner membrane (IEA,ISO,ISS)

mitochondrion (IEA,ISO)

nucleoplasm (IEA,ISO)

potassium channel complex (ISO)

Molecular Function

mitochondrial ATP-gated potassium channel activity (IEA,ISO,ISS)

potassium channel activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:18614015	PMID:31435016	PMID:34800366

Genomics

Comparative Map Data

Ccdc51
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	118,601,002 - 118,619,943 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	118,601,019 - 118,619,943 (+)	Ensembl				GRCr8
mRatBN7.2	8	109,722,595 - 109,741,478 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,722,557 - 109,741,472 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	115,345,869 - 115,356,269 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	113,545,044 - 113,555,444 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	111,387,850 - 111,398,250 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	8	119,495,246 - 119,505,724 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	8	121,600,188 - 121,610,666 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	8	120,089,908 - 120,100,386 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	8	111,490,471 - 111,500,871 (+)	NCBI		F344_StmMcwi
Rnor_6.0	8	117,812,091 - 117,830,848 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,812,099 - 117,830,868 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	117,163,863 - 117,182,591 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	114,095,905 - 114,106,350 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	109,022,317 - 109,032,735 (+)	NCBI		Celera
RGSC_v3.1	8	114,115,359 - 114,125,801 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

CCDC51
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	48,432,173 - 48,446,652 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	48,432,164 - 48,440,456 (-)	Ensembl			hg38	GRCh38
GRCh37	3	48,473,583 - 48,481,529 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	48,448,584 - 48,456,533 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	48,424,351 - 48,432,300 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	48,527,884 - 48,535,833 (-)	NCBI		HuRef
CHM1_1	3	48,425,864 - 48,433,813 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	48,460,186 - 48,474,660 (-)	NCBI		T2T-CHM13v2.0

Ccdc51
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,911,564 - 108,922,431 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	108,911,561 - 108,921,557 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	109,082,496 - 109,093,363 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	109,082,493 - 109,092,489 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	108,985,010 - 108,995,877 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	108,939,963 - 108,949,898 (+)	NCBI		MGSCv36	mm8
Celera	9	108,641,350 - 108,652,224 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI
cM Map	9	59.63	NCBI

Ccdc51
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	500,963 - 509,325 (-)	Ensembl
ChiLan1.0	NW_004955532	500,963 - 509,437 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC51
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	48,407,022 - 48,414,998 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	48,411,787 - 48,423,464 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	48,354,203 - 48,362,173 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	49,436,981 - 49,444,948 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	49,436,988 - 49,445,819 (-)	Ensembl			panPan2	panpan1.1

CCDC51
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	40,648,356 - 40,656,855 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	40,653,852 - 40,657,619 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	40,565,725 - 40,574,375 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	41,133,622 - 41,142,272 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	41,133,805 - 41,142,264 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	40,371,063 - 40,379,713 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	40,775,629 - 40,784,279 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	41,056,362 - 41,065,012 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc51
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	63,467,501 - 63,478,858 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	227,969 - 239,349 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	228,135 - 239,343 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC51
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,143,480 - 31,153,563 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	31,143,490 - 31,153,600 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	34,407,778 - 34,418,049 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC51
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	9,835,132 - 9,843,611 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	9,835,379 - 9,838,114 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	157,249,068 - 157,257,395 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc51
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	2,395,664 - 2,406,062 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	2,398,215 - 2,406,094 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc51
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	100,342,315 - 100,361,152 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc51
159 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	40
Count of miRNA genes:	35
Interacting mature miRNAs:	40
Transcripts:	ENSRNOT00000028075
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

RH129244

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	109,741,107 - 109,741,303 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	117,830,478 - 117,830,673	NCBI	Rnor6.0
Rnor_5.0	8	117,182,223 - 117,182,418	UniSTS	Rnor5.0
RGSC_v3.4	8	114,105,982 - 114,106,177	UniSTS	RGSC3.4
Celera	8	109,032,367 - 109,032,562	UniSTS
RH 3.4 Map	8	1116.8	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH129310

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	109,741,128 - 109,741,303 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	117,830,499 - 117,830,673	NCBI	Rnor6.0
Rnor_5.0	8	117,182,244 - 117,182,418	UniSTS	Rnor5.0
RGSC_v3.4	8	114,106,003 - 114,106,177	UniSTS	RGSC3.4
Celera	8	109,032,388 - 109,032,562	UniSTS
RH 3.4 Map	8	1114.89	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	89	59	6	353	189	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028075 ⟹ ENSRNOP00000028075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,615,613 - 118,619,943 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,737,148 - 109,741,472 (+)	Ensembl
Rnor_6.0 Ensembl	8	117,820,538 - 117,830,842 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077228 ⟹ ENSRNOP00000070269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,601,019 - 118,619,936 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,722,557 - 109,741,472 (+)	Ensembl
Rnor_6.0 Ensembl	8	117,812,099 - 117,830,868 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102638 ⟹ ENSRNOP00000094126

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,610,103 - 118,619,943 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,731,838 - 109,741,472 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104394 ⟹ ENSRNOP00000090082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,609,100 - 118,619,943 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,730,904 - 109,741,472 (+)	Ensembl

RefSeq Acc Id:

NM_001014098 ⟹ NP_001014120

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	118,609,456 - 118,619,943 (+)	NCBI
mRatBN7.2	8	109,730,990 - 109,741,478 (+)	NCBI
Dahl_SR_JrHsd	8	119,495,246 - 119,505,724 (+)	NCBI
Lyon_Normotensive	8	121,600,188 - 121,610,666 (+)	NCBI
Lyon_Hypertensive	8	120,089,908 - 120,100,386 (+)	NCBI
F344_StmMcwi	8	111,490,471 - 111,500,871 (+)	NCBI
Rnor_6.0	8	117,820,538 - 117,830,846 (+)	NCBI
Rnor_5.0	8	117,163,863 - 117,182,591 (+)	NCBI
RGSC_v3.4	8	114,095,905 - 114,106,350 (+)	RGD
Celera	8	109,022,317 - 109,032,735 (+)	RGD

Sequence:

show sequence

CAGACGCGGGGCTTACTGCTGGAGCCTAATAAGCTTAGTCTCTTCAGCTCTTGCGATGACGGGG
TGCAGCCCTGTATTCACAATGCAGCAGGTGGTGGGTGTATCCCATAGACTGGTATGGAGAACCT
TTCGTGGAACGGACCTCCTCATGACAAGGACTCTGTGCAGTCCAGGTCCCAGCCGACCTGGAGA
GAAGCGACCAGAAGCTGCAGCCTTAGGGCTGTATCATCGCCTCCCCGAGTTGGGAAGAACACTA
AGCCACACCATTCGGAATCAAGCAGCCTCAACTGCCAAGGCTTGGTGGGACAGATATGAGGAGT
TTGTAGGACTCAATGAAGTTCGAGAGGCCCAGGGAAACGTGACAGAGGCGGAGAAAGTGTTCAT
GGTGGCACGTGGTCTTGTTCGAGAAGCCCGGGAGGATCTAGAAGCTCAGCAGACGAAGCTGAAG
GAGGTGAGGGACCGCTTGGACCGAGTCTCCAGGGAGGACAACCAGTACCTGGAACTGGCTACTT
TGGAACACAGGATGCTACAGGAAGAGAAGAGGCTCCGAATAGCATATCTGCGTGCGGAAGACTC
AGAGCGAGAGAAGTTCTCTCTCTTCTCTGCAGCTGTGCGGGAGAGTCACGAGAAAGAGCGTACA
AGGGCTGAGAGGACCAAGAACTGGTCCCTCATTGGGTCAGTTCTAGGAGCTCTGATAGGTGTGG
CTGGTTCCACCTATGTTAACCGTGTCCGGCTACAAGAACTGAAGGCCTTACTCCTGGAAGCCCA
GAAAGGGCCTGTGAGCCTCCAGGAGGCCATCCGTGAACAGGCTTCTAGCTATTCCCTCCAACAG
AAAGACCTCCAGAACCTTATGGTGGATCTGAGGGGCCTGGTGCACGTTGGGCAGGACCAGGGCT
CTGGGTCACCAACAGGTCCTTCTTCTCCCCGAGGAAAAGACATAGATGGCCTTTCAGCTGCCAT
GAAAGAGCAGCTCAATCATTCCCGGCAGGTCTATTCCTGCCTAGAGGGTTTACGAGAGCAGCTT
GACAGCCTGGAAAAGACTTGCAGCCAAATGGCTGGGGTGGTTCGACTTGCAAAGGTCCCGGCAC
ATCCAGGCATGGTGGAGCCACTGGATGGGGCCCTGCCCAGCTCTTTGCTGGAACATGGGAGTAC
GATGTTGGCGCTGTCAGAGATGGAGCAGAGGCTAGAAGCCCAGGCCAACAGGAATGCCATCTCT
AGCACGCTGGTCACCTGTGTGACTTTTATGGCCACATTGCCGCTGCTCTACATGCTATTCAAGA
CCAGTTAGCCCTGGAATCCGTCTTCAAAGGGGCCGAAGGGTGACTGTAGGCTGTGTTGGGGATA
TAATGAATCTTTGAGGTACATACAACCTCAACCTGACTCTGAATACCATCAGAGGGGTTCGCCG
ACTGGTATATTTTATTCTGTAGGTAATACCTATTTGCATTAATTATCCAAACTTTGCACAAATG
TCCAATTAAAATATCTAAGAATTTGTATTATGTAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006243789 ⟹ XP_006243851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	118,609,879 - 118,619,941 (+)	NCBI
mRatBN7.2	8	109,731,410 - 109,741,478 (+)	NCBI
Rnor_6.0	8	117,820,603 - 117,830,848 (+)	NCBI
Rnor_5.0	8	117,163,863 - 117,182,591 (+)	NCBI

Sequence:

show sequence

CTTCTGCCTAGGTCAATTCGAAAACGTGGGGGTGGGGGAGCGTGTCTGGTCATAAAGCTGGTAA
TCCCACACAGAAAGAAAGCATTGCAGGTCGGGGGGAGGGTACATGCAAAGTGCCTTTCCGGAAC
CAAGGAAAGCACAGGTGGCTGGCACGAGATAGGATGGGAGATGACAGAAGTGGGTAGTGGCCAC
TATCGCCCAGTCCTCAGCTTCAGAAGCCGCGGGGAAAAGTTCGCACTTTATGAAATAATGAGTG
CAACTGTTTGCAAATTCTTTCTTCTAGCTCATTGTCTTGTTGATTATGTACTTTATATAGATAA
ATAGTAACTCTGAACTGAGGATTGAGGAAAGCTGACACTGTAGCAAGACAAACCTACAGCAAAG
CAGATAAGTAAAATACGCATCCCAGGTTATGTGACCTGTGTGGGGAGAAAAAAAATAAACAGAA
AGTGGTTACGGAATGCTCCTTTGGTGGGATGTCAATTTTTGATAGGGTCGTTAGATAAGAACTC
TCCAGGGTCCATTTGAGTAGGACTTGAGGAAGGTCAGGGAGCCAGCTCTAAACAGGGAACAGCT
AGGCAGTGCCAAGGCCCTGGGTGGAAAGTGGCCTCGTGTGTTCCAGTCCTTCATATGATTGGAA
GGAGTGAGGAACCAGCTGAAAGTGCAGTCAGAGAGGAATGAAAGTCATGGAGAAGACATTGGCT
TTTGCCTTGAAGGAACTGCGGGACTGTTGGAGGGGTTGACATGGAGTTCTCTGTGTATTTGAAA
GATCATTGCAGCTCTGTTGTTGACCTCAGAGCTGGAATGGAGAAGCACAGGGACCTGTCAGCTC
TTGCGATGACGGGGTGCAGCCCTGTATTCACAATGCAGCAGGTGGTGGGTGTATCCCATAGACT
GGTATGGAGAACCTTTCGTGGAACGGACCTCCTCATGACAAGGACTCTGTGCAGTCCAGGTCCC
AGCCGACCTGGAGAGAAGCGACCAGAAGCTGCAGCCTTAGGGCTGTATCATCGCCTCCCCGAGT
TGGGAAGAACACTAAGCCACACCATTCGGAATCAAGCAGCCTCAACTGCCAAGGCTTGGTGGGA
CAGATATGAGGAGTTTGTAGGACTCAATGAAGTTCGAGAGGCCCAGGGAAACGTGACAGAGGCG
GAGAAAGTGTTCATGGTGGCACGTGGTCTTGTTCGAGAAGCCCGGGAGGATCTAGAAGCTCAGC
AGACGAAGCTGAAGGAGGTGAGGGACCGCTTGGACCGAGTCTCCAGGGAGGACAACCAGTACCT
GGAACTGGCTACTTTGGAACACAGGATGCTACAGGAAGAGAAGAGGCTCCGAATAGCATATCTG
CGTGCGGAAGACTCAGAGCGAGAGAAGTTCTCTCTCTTCTCTGCAGCTGTGCGGGAGAGTCACG
AGAAAGAGCGTACAAGGGCTGAGAGGACCAAGAACTGGTCCCTCATTGGGTCAGTTCTAGGAGC
TCTGATAGGTGTGGCTGGTTCCACCTATGTTAACCGTGTCCGGCTACAAGAACTGAAGGCCTTA
CTCCTGGAAGCCCAGAAAGGGCCTGTGAGCCTCCAGGAGGCCATCCGTGAACAGGCTTCTAGCT
ATTCCCTCCAACAGAAAGACCTCCAGAACCTTATGGTGGATCTGAGGGGCCTGGTGCACGTTGG
GCAGGACCAGGGCTCTGGGTCACCAACAGGTCCTTCTTCTCCCCGAGGAAAAGACATAGATGGC
CTTTCAGCTGCCATGAAAGAGCAGCTCAATCATTCCCGGCAGGTCTATTCCTGCCTAGAGGGTT
TACGAGAGCAGCTTGACAGCCTGGAAAAGACTTGCAGCCAAATGGCTGGGGTGGTTCGACTTGC
AAAGGTCCCGGCACATCCAGGCATGGTGGAGCCACTGGATGGGGCCCTGCCCAGCTCTTTGCTG
GAACATGGGAGTACGATGTTGGCGCTGTCAGAGATGGAGCAGAGGCTAGAAGCCCAGGCCAACA
GGAATGCCATCTCTAGCACGCTGGTCACCTGTGTGACTTTTATGGCCACATTGCCGCTGCTCTA
CATGCTATTCAAGACCAGTTAGCCCTGGAATCCGTCTTCAAAGGGGCCGAAGGGTGACTGTAGG
CTGTGTTGGGGATATAATGAATCTTTGAGGTACATACAACCTCAACCTGACTCTGAATACCATC
AGAGGGGTTCGCCGACTGGTATATTTTATTCTGTAGGTAATACCTATTTGCATTAATTATCCAA
ACTTTGCACAAATGTCCAATTAAAATATCTAAGAATTTGTATTATGTAAAAGA

hide sequence

RefSeq Acc Id:

XM_006243790 ⟹ XP_006243852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	118,601,002 - 118,619,941 (+)	NCBI
mRatBN7.2	8	109,722,595 - 109,741,478 (+)	NCBI
Rnor_6.0	8	117,812,091 - 117,830,846 (+)	NCBI
Rnor_5.0	8	117,163,863 - 117,182,591 (+)	NCBI

Sequence:

show sequence

GCTCAGTACCCTGAGGTCCCCGGCAGTACCAGGACACTGCAGTGCTGTTAGCATTACCCCGGTT
GCGAGATGGAGGACCGTCTGCCCGACCTCACCTGTGGCTGTCCCCCGGCACTGTCTAGAATACA
GAGAAGCAGTTCGCCTTGAATCAAGGCAGGCATCTTTCAGGGGTCAGCTGTCCTTGACCTCACT
CCTCGCGGCTGGCCCACCATTCACGTGTCCAGAGACTCTTTCAGAGGGGAGGCTGGGAAGAGCA
GACGTGGGGAGGAGAAGGAATGCCGTTCTTCTGGAAGCAGGGATCTTCCAGGATAACTAAAGTT
TCAACTCTTGCGATGACGGGGTGCAGCCCTGTATTCACAATGCAGCAGGTGGTGGGTGTATCCC
ATAGACTGGTATGGAGAACCTTTCGTGGAACGGACCTCCTCATGACAAGGACTCTGTGCAGTCC
AGGTCCCAGCCGACCTGGAGAGAAGCGACCAGAAGCTGCAGCCTTAGGGCTGTATCATCGCCTC
CCCGAGTTGGGAAGAACACTAAGCCACACCATTCGGAATCAAGCAGCCTCAACTGCCAAGGCTT
GGTGGGACAGATATGAGGAGTTTGTAGGACTCAATGAAGTTCGAGAGGCCCAGGGAAACGTGAC
AGAGGCGGAGAAAGTGTTCATGGTGGCACGTGGTCTTGTTCGAGAAGCCCGGGAGGATCTAGAA
GCTCAGCAGACGAAGCTGAAGGAGGTGAGGGACCGCTTGGACCGAGTCTCCAGGGAGGACAACC
AGTACCTGGAACTGGCTACTTTGGAACACAGGATGCTACAGGAAGAGAAGAGGCTCCGAATAGC
ATATCTGCGTGCGGAAGACTCAGAGCGAGAGAAGTTCTCTCTCTTCTCTGCAGCTGTGCGGGAG
AGTCACGAGAAAGAGCGTACAAGGGCTGAGAGGACCAAGAACTGGTCCCTCATTGGGTCAGTTC
TAGGAGCTCTGATAGGTGTGGCTGGTTCCACCTATGTTAACCGTGTCCGGCTACAAGAACTGAA
GGCCTTACTCCTGGAAGCCCAGAAAGGGCCTGTGAGCCTCCAGGAGGCCATCCGTGAACAGGCT
TCTAGCTATTCCCTCCAACAGAAAGACCTCCAGAACCTTATGGTGGATCTGAGGGGCCTGGTGC
ACGTTGGGCAGGACCAGGGCTCTGGGTCACCAACAGGTCCTTCTTCTCCCCGAGGAAAAGACAT
AGATGGCCTTTCAGCTGCCATGAAAGAGCAGCTCAATCATTCCCGGCAGGTCTATTCCTGCCTA
GAGGGTTTACGAGAGCAGCTTGACAGCCTGGAAAAGACTTGCAGCCAAATGGCTGGGGTGGTTC
GACTTGCAAAGGTCCCGGCACATCCAGGCATGGTGGAGCCACTGGATGGGGCCCTGCCCAGCTC
TTTGCTGGAACATGGGAGTACGATGTTGGCGCTGTCAGAGATGGAGCAGAGGCTAGAAGCCCAG
GCCAACAGGAATGCCATCTCTAGCACGCTGGTCACCTGTGTGACTTTTATGGCCACATTGCCGC
TGCTCTACATGCTATTCAAGACCAGTTAGCCCTGGAATCCGTCTTCAAAGGGGCCGAAGGGTGA
CTGTAGGCTGTGTTGGGGATATAATGAATCTTTGAGGTACATACAACCTCAACCTGACTCTGAA
TACCATCAGAGGGGTTCGCCGACTGGTATATTTTATTCTGTAGGTAATACCTATTTGCATTAAT
TATCCAAACTTTGCACAAATGTCCAATTAAAATATCTAAGAATTTGTATTATGTAAAA

hide sequence

RefSeq Acc Id:

XM_006243791 ⟹ XP_006243853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	118,601,044 - 118,619,941 (+)	NCBI
mRatBN7.2	8	109,722,909 - 109,741,478 (+)	NCBI
Rnor_6.0	8	117,812,091 - 117,830,846 (+)	NCBI
Rnor_5.0	8	117,163,863 - 117,182,591 (+)	NCBI

Sequence:

show sequence

GCTCAGTACCCTGAGGTCCCCGGCAGTACCAGGACACTGCAGTGCTGTTAGCATTACCCCGGTT
GCGAGATGGAGGACCGTCTGCCCGACCTCACCTGTGGCTGTCCCCCGGCACTGTCTAGAATACA
GAGAAGCAGTTCGCCTTGAATCAAGGCAGGCATCTTTCAGGGGTCAGCTGTCCTTGACCTCACT
CCTCGCGGCTGGCCCACCATTCACGTGTCCAGAGACTCTTTCAGAGGGGAGGCTGGGAAGAGCA
GACGTGGGGAGGAGAAGGAATGCCGTTCTTCTGGAAGCAGGGATCTTCCAGGATAACTAAAGTT
TCAAGTATGTATGTTTGAGAAAAAGTCTGGGAAGGATGGTCTCGAGAACGTGTGCCTCCTATTA
GGAACTGCTCCGACTTCCATTTATTTCTTGGAGAGTCTTTATGTCCGGAGCGCTGGTAGCGTAG
AGACGAATGAAGCTCAAGAGGTTAACGAAGGTTCGCCGGGAGTGGTCCTCGAATTGCCCAACAG
ATTGAGGGAGAAATAGCAAGAAAAATGGGTTAGGAGGCTGACGCATGATGTTTCTGAGAAAAAA
AATTCAACTTCGACAAGGATGACAGGTGGAAGTTACTGCAGCAGAGAGAGGAGCTCTTGCGATG
ACGGGGTGCAGCCCTGTATTCACAATGCAGCAGGTGGTGGGTGTATCCCATAGACTGGTATGGA
GAACCTTTCGTGGAACGGACCTCCTCATGACAAGGACTCTGTGCAGTCCAGGTCCCAGCCGACC
TGGAGAGAAGCGACCAGAAGCTGCAGCCTTAGGGCTGTATCATCGCCTCCCCGAGTTGGGAAGA
ACACTAAGCCACACCATTCGGAATCAAGCAGCCTCAACTGCCAAGGCTTGGTGGGACAGATATG
AGGAGTTTGTAGGACTCAATGAAGTTCGAGAGGCCCAGGGAAACGTGACAGAGGCGGAGAAAGT
GTTCATGGTGGCACGTGGTCTTGTTCGAGAAGCCCGGGAGGATCTAGAAGCTCAGCAGACGAAG
CTGAAGGAGGTGAGGGACCGCTTGGACCGAGTCTCCAGGGAGGACAACCAGTACCTGGAACTGG
CTACTTTGGAACACAGGATGCTACAGGAAGAGAAGAGGCTCCGAATAGCATATCTGCGTGCGGA
AGACTCAGAGCGAGAGAAGTTCTCTCTCTTCTCTGCAGCTGTGCGGGAGAGTCACGAGAAAGAG
CGTACAAGGGCTGAGAGGACCAAGAACTGGTCCCTCATTGGGTCAGTTCTAGGAGCTCTGATAG
GTGTGGCTGGTTCCACCTATGTTAACCGTGTCCGGCTACAAGAACTGAAGGCCTTACTCCTGGA
AGCCCAGAAAGGGCCTGTGAGCCTCCAGGAGGCCATCCGTGAACAGGCTTCTAGCTATTCCCTC
CAACAGAAAGACCTCCAGAACCTTATGGTGGATCTGAGGGGCCTGGTGCACGTTGGGCAGGACC
AGGGCTCTGGGTCACCAACAGGTCCTTCTTCTCCCCGAGGAAAAGACATAGATGGCCTTTCAGC
TGCCATGAAAGAGCAGCTCAATCATTCCCGGCAGGTCTATTCCTGCCTAGAGGGTTTACGAGAG
CAGCTTGACAGCCTGGAAAAGACTTGCAGCCAAATGGCTGGGGTGGTTCGACTTGCAAAGGTCC
CGGCACATCCAGGCATGGTGGAGCCACTGGATGGGGCCCTGCCCAGCTCTTTGCTGGAACATGG
GAGTACGATGTTGGCGCTGTCAGAGATGGAGCAGAGGCTAGAAGCCCAGGCCAACAGGAATGCC
ATCTCTAGCACGCTGGTCACCTGTGTGACTTTTATGGCCACATTGCCGCTGCTCTACATGCTAT
TCAAGACCAGTTAGCCCTGGAATCCGTCTTCAAAGGGGCCGAAGGGTGACTGTAGGCTGTGTTG
GGGATATAATGAATCTTTGAGGTACATACAACCTCAACCTGACTCTGAATACCATCAGAGGGGT
TCGCCGACTGGTATATTTTATTCTGTAGGTAATACCTATTTGCATTAATTATCCAAACTTTGCA
CAAATGTCCAATTAAAATATCTAAGAATTTGTATTATGTAAAA

hide sequence

RefSeq Acc Id:

XM_006243792 ⟹ XP_006243854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	118,613,483 - 118,619,941 (+)	NCBI
mRatBN7.2	8	109,735,075 - 109,741,478 (+)	NCBI
Rnor_6.0	8	117,824,429 - 117,830,848 (+)	NCBI
Rnor_5.0	8	117,163,863 - 117,182,591 (+)	NCBI

Sequence:

show sequence

AAAATTAAGAGAGAAGTGGAGAACTAGAGGTGTAGAACACCAGCTCATGGGCTTAACTCCCCAG
TATTGCAGTAAAGGGCTGGGGCTGGGAGATACTGGCAGCTGAGACAGTAAGCCAGGAGGAAACC
ACCACACCACCACCACCCTGTGTGGAAAAGCAGGGTTGAAGGCAGCCATCTGCTGACGGTGGAA
AACCAATCTGAGAAGGCAAGATTCGAGATGTGGGCTCCTGCTTAATGTGGCCTCTGTCCAGCTG
TCCCCCACCCAGCCCACCTCTGCTTTACCTTCCAGCTGCATTGAGCACCTTGCAGATGACTCCA
AGAGCTTCCTAGGTACTCCCTCTGGCAGCACCATTCTCCCCTGACCAGCTGAAGGGCCTGTGAG
ACACCTGTGTGTGGATGCCATTCGGATTGAGAGACAAGCCAGCTCATGGTGTGGTGGCAAGGAG
AGGCTGAAAGGAGGGAGTGGCTGAGGGAAACAAGCTGGGAGTCCCTGACACTTCCTGCTATTAC
CAAGCACACATTCTTGCTAGGCAATTTTATCTGATGCAGAAAGCAAGAAAGGTGGCCTGTAAGG
GAGTGGTCAAGGAAGGCCTTATTGAAAGAGGACATTGGAGCAGACATAGGTCACAGACTTGTGG
AGGAAGAGAGGCATATTTGGAGGTGGCAGGACACAGAATCATACAGATCATACTTAGGGTGTCA
GGGTGGTTGGAAGAGAGTATGGCTGTGGGAAAGGGGAGGGGAAGGCTGGGAGTGCCTGACCTTT
CTGGTTTCTGCCAGATCCCTTTGTGCGGGTGAGTTGGGAACTGTAAGCTGTGCTCTCCCTCCGG
TGTTAACCTGCCCCCGGGCTGCTCTGTGGAAAGCAAGCTGTAGGTTTCATCCCAGCCAGGTGGG
TGATGTTCAGGGAACCGAGAGCAGACAGCTAGTAGAGGAACTGGGCTGGAAAGGCTGGAGGAAG
TTGAGAGGAAGCAGTGACTTCTGGAAGAGATGGGCTCTGAAAGCTATGGAGAGATGGAAGGCAT
CTGAGACACAGCAGTCCCGGGACCTCCGAGTCTTAGAATAGGATCAAAAGAGAGGGGAAGCCGC
TGAGGCTGTAGTGGTACAGAGCCTGTCTGGCGTGTGTCAGGCTCTGCTAGGCTTCCTCCCTAAC
CTCTGTGTCTCCGGAGGGAGACAGAGGGAGGTGTGAGGCAGTGGTAGATGGCCAGCTCACTTCT
GCCAAGGCTCACTGGAAGGGGGGCTGGGTATTGTGCTTGGCCTGGATGAAAGGTAAACTTGCAG
AGCTGTTGAGGGACTGTAGTAACTTGTGTTCTGTAGGCCCTGGTGTCGGGGCTTGGATGGGAGT
GGTTCGTGCTGTCTTAGCTTTGTGAATGAGACTCAAGAGTTCAGGTGGAGCACCAGCTTGGAAG
CAGTGCCACCAAGATCCCCTCTTCTGTGGCTCTCAGCCTGAGCCCACTTTGACCAGAAGAGCGC
TCCTCTGAGGAGGAGCCTGGGGTGCATGGAGTAAATCTGCACATGAGGAAGCCCCATCACACCT
GCGTGTGTTTACATCCTATCCTTTTCATATGATCCAGTTAATCTGTATATAAAGAAATTCTCAA
AACTATCCTGCCACCTCCTAGTTACCACCTGTGAGAACTTTCATGCCTCGAAACTAAGGAAAGA
AATTACAACAATAGTTTGAGGAAGCCCTTTTGTGCTCTCCCGGCCCTTCCTCTTTCTTTCCCTG
CTCCCGTTGCTTTCCTTCGTTGGCCACCAGGTGTCGCTCTCATCAGTGCCTGGGGCTTAATGCT
GTTTGACCAGAGAAGGTTGCCAGGTTTTTCTGGGATTCTGGGTAACTTGGCCCTTCCTCCGGAT
TCTGAGCCCCTTCTGTTCTTGGGCCGGGCACTGCCTGCTCTGGGTACTCCTTGTCCTGTGCAGG
TCAGAGGAAGTAGGTATTGTAAAGCAGGGCTGAAAGGGATCACAGAAGCCTGGCCTGCTGAGTG
GCTGCGGCCGAGGCTGGAGCTGAGCTCTTGCGATGACGGGGTGCAGCCCTGTATTCACAATGCA
GCAGGTGGTGGGTGTATCCCATAGACTGGTATGGAGAACCTTTCGTGGAACGGACCTCCTCATG
ACAAGGACTCTGTGCAGTCCAGGTCCCAGCCGACCTGGAGAGAAGCGACCAGAAGCTGCAGCCT
TAGGGCTGTATCATCGCCTCCCCGAGTTGGGAAGAACACTAAGCCACACCATTCGGAATCAAGC
AGCCTCAACTGCCAAGGCTTGGTGGGACAGATATGAGGAGTTTGTAGGACTCAATGAAGTTCGA
GAGGCCCAGGGAAACGTGACAGAGGCGGAGAAAGTGTTCATGGTGGCACGTGGTCTTGTTCGAG
AAGCCCGGGAGGATCTAGAAGCTCAGCAGACGAAGCTGAAGGAGGTGAGGGACCGCTTGGACCG
AGTCTCCAGGGAGGACAACCAGTACCTGGAACTGGCTACTTTGGAACACAGGATGCTACAGGAA
GAGAAGAGGCTCCGAATAGCATATCTGCGTGCGGAAGACTCAGAGCGAGAGAAGTTCTCTCTCT
TCTCTGCAGCTGTGCGGGAGAGTCACGAGAAAGAGCGTACAAGGGCTGAGAGGACCAAGAACTG
GTCCCTCATTGGGTCAGTTCTAGGAGCTCTGATAGGTGTGGCTGGTTCCACCTATGTTAACCGT
GTCCGGCTACAAGAACTGAAGGCCTTACTCCTGGAAGCCCAGAAAGGGCCTGTGAGCCTCCAGG
AGGCCATCCGTGAACAGGCTTCTAGCTATTCCCTCCAACAGAAAGACCTCCAGAACCTTATGGT
GGATCTGAGGGGCCTGGTGCACGTTGGGCAGGACCAGGGCTCTGGGTCACCAACAGGTCCTTCT
TCTCCCCGAGGAAAAGACATAGATGGCCTTTCAGCTGCCATGAAAGAGCAGCTCAATCATTCCC
GGCAGGTCTATTCCTGCCTAGAGGGTTTACGAGAGCAGCTTGACAGCCTGGAAAAGACTTGCAG
CCAAATGGCTGGGGTGGTTCGACTTGCAAAGGTCCCGGCACATCCAGGCATGGTGGAGCCACTG
GATGGGGCCCTGCCCAGCTCTTTGCTGGAACATGGGAGTACGATGTTGGCGCTGTCAGAGATGG
AGCAGAGGCTAGAAGCCCAGGCCAACAGGAATGCCATCTCTAGCACGCTGGTCACCTGTGTGAC
TTTTATGGCCACATTGCCGCTGCTCTACATGCTATTCAAGACCAGTTAGCCCTGGAATCCGTCT
TCAAAGGGGCCGAAGGGTGACTGTAGGCTGTGTTGGGGATATAATGAATCTTTGAGGTACATAC
AACCTCAACCTGACTCTGAATACCATCAGAGGGGTTCGCCGACTGGTATATTTTATTCTGTAGG
TAATACCTATTTGCATTAATTATCCAAACTTTGCACAAATGTCCAATTAAAATATCTAAGAATT
TGTATTATGTAAAAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014120	(Get FASTA)	NCBI Sequence Viewer
	XP_006243851	(Get FASTA)	NCBI Sequence Viewer
	XP_006243852	(Get FASTA)	NCBI Sequence Viewer
	XP_006243853	(Get FASTA)	NCBI Sequence Viewer
	XP_006243854	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87581	(Get FASTA)	NCBI Sequence Viewer
	EDL77112	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070269
	ENSRNOP00000090082
	ENSRNOP00000094126
GenBank Protein	Q5PPN7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014120 ⟸ NM_001014098

- UniProtKB:

Q5PPN7 (UniProtKB/Swiss-Prot), A6I3B5 (UniProtKB/TrEMBL), A0A8I6GKL1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTRTLCSPGPSRPGEKRPEAAALGLYHRLPELGRTLSHTIRNQAASTAKAWWDRYEEFVGLNEV
REAQGNVTEAEKVFMVARGLVREAREDLEAQQTKLKEVRDRLDRVSREDNQYLELATLEHRMLQ
EEKRLRIAYLRAEDSEREKFSLFSAAVRESHEKERTRAERTKNWSLIGSVLGALIGVAGSTYVN
RVRLQELKALLLEAQKGPVSLQEAIREQASSYSLQQKDLQNLMVDLRGLVHVGQDQGSGSPTGP
SSPRGKDIDGLSAAMKEQLNHSRQVYSCLEGLREQLDSLEKTCSQMAGVVRLAKVPAHPGMVEP
LDGALPSSLLEHGSTMLALSEMEQRLEAQANRNAISSTLVTCVTFMATLPLLYMLFKTS

hide sequence

RefSeq Acc Id:	XP_006243852 ⟸ XM_006243790
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JXH2 (UniProtKB/TrEMBL), A0A0H2UHS3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPFFWKQGSSRITKVSTLAMTGCSPVFTMQQVVGVSHRLVWRTFRGTDLLMTRTLCSPGPSRPG EKRPEAAALGLYHRLPELGRTLSHTIRNQAASTAKAWWDRYEEFVGLNEVREAQGNVTEAEKVF MVARGLVREAREDLEAQQTKLKEVRDRLDRVSREDNQYLELATLEHRMLQEEKRLRIAYLRAED SEREKFSLFSAAVRESHEKERTRAERTKNWSLIGSVLGALIGVAGSTYVNRVRLQELKALLLEA QKGPVSLQEAIREQASSYSLQQKDLQNLMVDLRGLVHVGQDQGSGSPTGPSSPRGKDIDGLSAA MKEQLNHSRQVYSCLEGLREQLDSLEKTCSQMAGVVRLAKVPAHPGMVEPLDGALPSSLLEHGS TMLALSEMEQRLEAQANRNAISSTLVTCVTFMATLPLLYMLFKTS hide sequence

RefSeq Acc Id:	XP_006243853 ⟸ XM_006243791
- Peptide Label:	isoform X3
- UniProtKB:	Q5PPN7 (UniProtKB/Swiss-Prot), A6I3B5 (UniProtKB/TrEMBL), A0A8I6GKL1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGCSPVFTMQQVVGVSHRLVWRTFRGTDLLMTRTLCSPGPSRPGEKRPEAAALGLYHRLPELG RTLSHTIRNQAASTAKAWWDRYEEFVGLNEVREAQGNVTEAEKVFMVARGLVREAREDLEAQQT KLKEVRDRLDRVSREDNQYLELATLEHRMLQEEKRLRIAYLRAEDSEREKFSLFSAAVRESHEK ERTRAERTKNWSLIGSVLGALIGVAGSTYVNRVRLQELKALLLEAQKGPVSLQEAIREQASSYS LQQKDLQNLMVDLRGLVHVGQDQGSGSPTGPSSPRGKDIDGLSAAMKEQLNHSRQVYSCLEGLR EQLDSLEKTCSQMAGVVRLAKVPAHPGMVEPLDGALPSSLLEHGSTMLALSEMEQRLEAQANRN AISSTLVTCVTFMATLPLLYMLFKTS hide sequence

RefSeq Acc Id:	XP_006243851 ⟸ XM_006243789
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GKL1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEFSVYLKDHCSSVVDLRAGMEKHRDLSALAMTGCSPVFTMQQVVGVSHRLVWRTFRGTDLLMT RTLCSPGPSRPGEKRPEAAALGLYHRLPELGRTLSHTIRNQAASTAKAWWDRYEEFVGLNEVRE AQGNVTEAEKVFMVARGLVREAREDLEAQQTKLKEVRDRLDRVSREDNQYLELATLEHRMLQEE KRLRIAYLRAEDSEREKFSLFSAAVRESHEKERTRAERTKNWSLIGSVLGALIGVAGSTYVNRV RLQELKALLLEAQKGPVSLQEAIREQASSYSLQQKDLQNLMVDLRGLVHVGQDQGSGSPTGPSS PRGKDIDGLSAAMKEQLNHSRQVYSCLEGLREQLDSLEKTCSQMAGVVRLAKVPAHPGMVEPLD GALPSSLLEHGSTMLALSEMEQRLEAQANRNAISSTLVTCVTFMATLPLLYMLFKTS hide sequence

RefSeq Acc Id:	XP_006243854 ⟸ XM_006243792
- Peptide Label:	isoform X3
- UniProtKB:	Q5PPN7 (UniProtKB/Swiss-Prot), A6I3B5 (UniProtKB/TrEMBL), A0A8I6GKL1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGCSPVFTMQQVVGVSHRLVWRTFRGTDLLMTRTLCSPGPSRPGEKRPEAAALGLYHRLPELG RTLSHTIRNQAASTAKAWWDRYEEFVGLNEVREAQGNVTEAEKVFMVARGLVREAREDLEAQQT KLKEVRDRLDRVSREDNQYLELATLEHRMLQEEKRLRIAYLRAEDSEREKFSLFSAAVRESHEK ERTRAERTKNWSLIGSVLGALIGVAGSTYVNRVRLQELKALLLEAQKGPVSLQEAIREQASSYS LQQKDLQNLMVDLRGLVHVGQDQGSGSPTGPSSPRGKDIDGLSAAMKEQLNHSRQVYSCLEGLR EQLDSLEKTCSQMAGVVRLAKVPAHPGMVEPLDGALPSSLLEHGSTMLALSEMEQRLEAQANRN AISSTLVTCVTFMATLPLLYMLFKTS hide sequence

Ensembl Acc Id:

ENSRNOP00000070269 ⟸ ENSRNOT00000077228

Ensembl Acc Id:

ENSRNOP00000028075 ⟸ ENSRNOT00000028075

Ensembl Acc Id:

ENSRNOP00000094126 ⟸ ENSRNOT00000102638

Ensembl Acc Id:

ENSRNOP00000090082 ⟸ ENSRNOT00000104394

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PPN7-F1-model_v2	AlphaFold	Q5PPN7	1-410	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311466	AgrOrtholog
BioCyc Gene	G2FUF-29093	BioCyc
Ensembl Genes	ENSRNOG00000020688	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000077228	ENTREZGENE
	ENSRNOT00000102638	ENTREZGENE
	ENSRNOT00000104394	ENTREZGENE
IMAGE_CLONE	IMAGE:7314505	IMAGE-MGC_LOAD
InterPro	CCDC51	UniProtKB/Swiss-Prot
KEGG Report	rno:316008	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105598	IMAGE-MGC_LOAD
NCBI Gene	316008	ENTREZGENE
PANTHER	MITOCHONDRIAL POTASSIUM CHANNEL	UniProtKB/Swiss-Prot
	PTHR28624	UniProtKB/Swiss-Prot
PhenoGen	Ccdc51	PhenoGen
RatGTEx	ENSRNOG00000020688	RatGTEx
UniProt	A0A0G2JXH2	ENTREZGENE, UniProtKB/TrEMBL
	A0A0H2UHS3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8L1_RAT	UniProtKB/TrEMBL
	A0A8I6GKL1	ENTREZGENE, UniProtKB/TrEMBL
	A6I3B5	ENTREZGENE, UniProtKB/TrEMBL
	CCD51_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Ccdc51	coiled-coil domain containing 51	RGD1311466	similar to RIKEN cDNA 5730568A12	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1311466	similar to RIKEN cDNA 5730568A12	RGD1311466_predicted	similar to RIKEN cDNA 5730568A12 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1311466_predicted	similar to RIKEN cDNA 5730568A12 (predicted)	LOC316008_predicted		Symbol and Name status set to approved	1331353	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar