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Gene: Gprc5c (G protein-coupled receptor, class C, group 5, member C) Rattus norvegicus

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Symbol:

Gprc5c

Name:

G protein-coupled receptor, class C, group 5, member C

RGD ID:

1311408

Description:

Predicted to enable protein kinase activator activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in extracellular exosome and plasma membrane. Orthologous to human GPRC5C (G protein-coupled receptor class C group 5 member C); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

G protein-coupled receptor, family C, group 5, member C; G-protein coupled receptor family C group 5 member C; LOC287805

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	100,385,682 - 100,407,953 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	100,383,631 - 100,426,962 (+)	Ensembl				GRCr8
mRatBN7.2	10	99,886,900 - 99,908,928 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	99,887,077 - 99,908,926 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	104,946,119 - 104,963,782 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	104,409,239 - 104,426,904 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	99,808,768 - 99,826,712 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	103,395,222 - 103,417,360 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	103,395,511 - 103,417,358 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	103,049,565 - 103,073,773 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	104,731,909 - 104,754,468 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	98,476,592 - 98,494,614 (+)	NCBI		Celera
RGSC_v3.1	10	104,746,807 - 104,765,345 (+)	NCBI
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(S)-nicotine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) chloride (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cytarabine (ISO)

DDE (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

endosulfan (EXP)

Enterolactone (ISO)

epoxiconazole (ISO)

flutamide (EXP)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

glycidol (EXP)

ivermectin (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

menadione (ISO)

methylmercury chloride (ISO)

monosodium L-glutamate (ISO)

N-methyl-4-phenylpyridinium (ISO)

niclosamide (ISO)

nicotine (ISO)

nitrofen (EXP)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

permethrin (ISO)

phenobarbital (EXP)

pirinixic acid (ISO)

progesterone (ISO)

quercetin (ISO)

raloxifene (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

tamoxifen (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

troglitazone (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G protein-coupled receptor signaling pathway (IEA)

signal transduction (IEA)

Cellular Component

extracellular exosome (IBA)

membrane (IEA)

plasma membrane (IBA,IEA,ISO)

receptor complex (IBA,IEA,ISO)

Molecular Function

G protein-coupled receptor activity (IEA)

protein binding (ISO)

protein kinase activator activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14651853	PMID:15489334	PMID:19056867	PMID:19190083	PMID:23376485	PMID:23382219	PMID:23533145

Genomics

Comparative Map Data

Gprc5c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	100,385,682 - 100,407,953 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	100,383,631 - 100,426,962 (+)	Ensembl				GRCr8
mRatBN7.2	10	99,886,900 - 99,908,928 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	99,887,077 - 99,908,926 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	104,946,119 - 104,963,782 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	104,409,239 - 104,426,904 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	99,808,768 - 99,826,712 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	103,395,222 - 103,417,360 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	103,395,511 - 103,417,358 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	103,049,565 - 103,073,773 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	104,731,909 - 104,754,468 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	98,476,592 - 98,494,614 (+)	NCBI		Celera
RGSC_v3.1	10	104,746,807 - 104,765,345 (+)	NCBI
Cytogenetic Map	10	q32.1	NCBI

GPRC5C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	74,432,088 - 74,451,658 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	74,424,851 - 74,451,653 (+)	Ensembl			hg38	GRCh38
GRCh37	17	72,428,227 - 72,447,797 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	69,939,262 - 69,955,163 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	69,939,261 - 69,955,161	NCBI
Celera	17	69,020,312 - 69,036,199 (+)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	67,836,934 - 67,852,782 (+)	NCBI		HuRef
CHM1_1	17	72,492,209 - 72,508,106 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	75,322,628 - 75,342,195 (+)	NCBI		T2T-CHM13v2.0

Gprc5c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	114,741,976 - 114,763,443 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	114,741,978 - 114,763,443 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	114,851,150 - 114,872,617 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	114,851,152 - 114,872,617 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	114,712,846 - 114,733,931 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	114,668,145 - 114,685,186 (+)	NCBI		MGSCv36	mm8
MGSCv36	11	115,759,902 - 115,776,474 (+)	NCBI		MGSCv36	mm8
Celera	11	126,612,634 - 126,612,992 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	80.54	NCBI

Gprc5c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955553	1,297,560 - 1,321,373 (+)	Ensembl
ChiLan1.0	NW_004955553	1,303,176 - 1,315,482 (+)	NCBI	ChiLan1.0	ChiLan1.0

GPRC5C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	90,461,893 - 90,482,721 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	95,284,860 - 95,305,065 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	68,369,469 - 68,390,209 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	73,927,256 - 73,947,953 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	73,927,256 - 73,943,702 (+)	Ensembl			panPan2	panpan1.1

GPRC5C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	5,983,545 - 6,005,586 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	5,983,542 - 5,999,068 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	6,605,429 - 6,627,523 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	6,655,926 - 6,678,037 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	6,655,926 - 6,672,902 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	6,699,144 - 6,705,531 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	6,800,062 - 6,822,174 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	6,859,914 - 6,882,045 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gprc5c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	6,567,059 - 6,585,818 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936655	64,995 - 84,315 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936655	65,017 - 84,184 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPRC5C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	6,694,286 - 6,715,896 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	6,698,598 - 6,715,279 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	6,735,207 - 6,735,762 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPRC5C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	47,183,402 - 47,205,691 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	47,183,374 - 47,203,263 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	17,994,827 - 18,016,080 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gprc5c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	4,371,861 - 4,387,350 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624801	4,371,891 - 4,387,465 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gprc5c
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	74,448,196 - 74,470,113 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gprc5c
86 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	275
Count of miRNA genes:	167
Interacting mature miRNAs:	217
Transcripts:	ENSRNOT00000004256
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93723381	107556066	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	97202388	107556066	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	91127270	107556066	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	97202388	107556066	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	81012077	101828297	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91727883	107713808	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat

Markers in Region

RH130706

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	99,905,508 - 99,905,658 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	103,413,941 - 103,414,090	NCBI	Rnor6.0
Rnor_5.0	10	103,070,354 - 103,070,503	UniSTS	Rnor5.0
RGSC_v3.4	10	104,751,049 - 104,751,198	UniSTS	RGSC3.4
Celera	10	98,494,457 - 98,494,606	UniSTS
Cytogenetic Map	10	q32.2	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	52	59	6	316	152	11	137	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC105781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004256 ⟹ ENSRNOP00000004256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	100,385,975 - 100,407,951 (+)	Ensembl
mRatBN7.2 Ensembl	10	99,887,077 - 99,908,926 (+)	Ensembl
Rnor_6.0 Ensembl	10	103,395,511 - 103,417,358 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086924 ⟹ ENSRNOP00000074938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	100,386,751 - 100,404,693 (+)	Ensembl
mRatBN7.2 Ensembl	10	99,887,721 - 99,905,666 (+)	Ensembl
Rnor_6.0 Ensembl	10	103,396,155 - 103,414,098 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105225 ⟹ ENSRNOP00000095514

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	100,386,871 - 100,407,951 (+)	Ensembl
mRatBN7.2 Ensembl	10	99,887,906 - 99,908,870 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109785 ⟹ ENSRNOP00000079729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	100,385,975 - 100,404,693 (+)	Ensembl
mRatBN7.2 Ensembl	10	99,887,447 - 99,905,660 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132323 ⟹ ENSRNOP00000112496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	100,383,631 - 100,407,953 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166620 ⟹ ENSRNOP00000100082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	100,385,975 - 100,426,962 (+)	Ensembl

RefSeq Acc Id:

NM_001191591 ⟹ NP_001178520

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,386,751 - 100,404,693 (+)	NCBI
mRatBN7.2	10	99,887,721 - 99,905,666 (+)	NCBI
Rnor_6.0	10	103,396,155 - 103,414,098 (+)	NCBI
Rnor_5.0	10	103,049,565 - 103,073,773 (+)	NCBI
Celera	10	98,476,592 - 98,494,614 (+)	NCBI

Sequence:

show sequence

GGGCCGGCCGCGCTTTGTTACTGGTGAGGATTGCTAGTACCTGGAGCACTGCTGGCCCCGGAGG
AGCGCCCCGAATGGAGGGACCCAGCTGAAGCCTGGCCTAGGAGCCAGGATGGCCACCCATAAAA
CCTTGCTGATGTGCCTAGGACTGCCTCTCTTCTTCCCGGGAGCCTTGGCCCAGAATCATGCCCC
ACCTGGCTGTAGCCCAGACCTGGATCCCCTCTACTACAACCTTTGTGACCGCTCGGGGGCCTGG
GGCATTGTCTTGGAGGCAGTGGCCGGGGCAGGCATCATCACGACCTTTGTGCTAACCATTATCC
TTGTGGCTAGCCTCCCATTTGTGCAGGACACTAAGAAGCGGAGTCTCCTGGGGACCCAAGTGTT
CTTCCTGCTGGGCACCCTGGGCCTCTTCTGCCTCGTGTTTGCCTGCGTGGTGAAGCCAGACTTC
TCGACCTGTGCCTCTCGACGGTTCCTCTTTGGGGTCCTGTTTGCCATCTGCTTCTCCTGCCTGA
TAGCCCACACCCTCTCCCTCAACTTCCTAGCCCGGAAGAACCATGGGCCCCGAGGCTGGGTTAT
CTTCACTGTGGCTCTGCTTCTCACCCTTGTGGAGGTCATCATTAACACCGAGTGGTTGATTATC
ACCCTGGTACGGGGAGGCGGCCAGGTTAGCACCCCGGGCAATGGCAGCGCCGACTGGACCGTGA
CCTCTCCGTGTGCCATTGCCAACATGGACTTTGTCATGGCCCTCATTTACGTAATGCTGCTGCT
GCTGGCGGCCTTCCTAGGAGCCTGGCCCACCTTGTGTGGCCGCTTTAAGCGCTGGCGGAAGCAC
GGGGTCTTTGTGTTGCTCACCACGGCCACCTCCATTGCCATCTGGGTGGTGTGGATTGTCATGT
ACACCTACGGCAATAAGCAGCACCATAGCCCCACCTGGGATGACCCCACACTGGCCATTGCGCT
CGCTGCCAATGCCTGGACTTTTGTCTTCTTCTATGTCATCCCTGAGGTCTCCCAAGTGACCAAA
CCCAGCCCAGAACAGAGCTACCAGGGGGACATGTACCCGACCCGAGGGGTGGGCTACGAGACCC
TCCTGAAGGAGCAGACGGGCCCGAGCATGTTTGTGGAGAACAAGGCATTTTCTATGGATGAACC
AGCCTCAGCAAAGAGACCGGTGTCGCCTTACAGTGGCTACAATGGTCAGCTGCTGACCAGCGTG
TACCAGCCCACCGAGATGGCCCTGATGCACAAAGGCCCGTCTGAAGGTGCGTACGACGTCATCC
TCCCACGGGCCACCGCCAACAGCCAGGTGATGGGCAGTGCCAACTCAACCCTGCGAGCTGAAGA
CATGTACATGGTCCAGAGCCACCAGGTGGCCACGCCAACGAAAGACGGCAAGATCTCTCAGGTC
TTTAGAAATCCCTATGTGTGGGACTAAGGCAGCAGCTGTGGCCAGGAGGATGCGGGCCAATTTA
GAGAGGGTCCTTGGGACCTGGTTCGGGTGAGGGACCACTAGGGACCCTATGCTCTGTGGCTCCC
TTCCCTCCTTACTGGCTCAGGGTAGCTTATGCCTCAGGGTCAGATCCCCTGATCTGCCAATGTT
TGGGTGTGTGTCCAGGAGGGCCCCTCTCACTCAGTATTTGTGGAGTCCAGGCGCTTGCCCTGTT
TCATGCCAGGGCTACCTCTGGTGATCTAACTCTATCCAAATAGTGTTCTGCTTGGGATGGTGGC
TGGTTCTATGCCTACACTCTCCAGTGACACCTACAAGCCTCCATGGAGCTCAGAGAGAATGCCT
TGGGCTGGATCCCACTCCTCTGTGAGGAGCAAGGGTGCCTAATAAACACATTTCTGCTTTATTA
A

hide sequence

RefSeq Acc Id:

XM_006247678 ⟹ XP_006247740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,385,682 - 100,407,953 (+)	NCBI
mRatBN7.2	10	99,886,900 - 99,908,928 (+)	NCBI
Rnor_6.0	10	103,395,223 - 103,417,360 (+)	NCBI
Rnor_5.0	10	103,049,565 - 103,073,773 (+)	NCBI

Sequence:

show sequence

CCACAGAGGTCTCAGCTGGGATTCGCTTCCCTATTTCTGCGGTTTCTTTTCAGCAGATTCCTGG
GGCTGGAGGAGAAAGGGTGGATCCACCCGGTAGGGATTGGGGGTGTGGTTCAAGGGAATCTGAA
TTCGCGGAAAGGTCTCTGGACTGCGGGAGAGGCCAGACTCGGAATCAGCAACAACGTGGCCAGG
AGCGCACAGACCACAGGGATCACATTAAACACTGTACCTCGGGGAACAAAATTGAGAAGGCTAA
TTAGGACAGGTCACCACAGGGAACCGGAACACGGGGAGGGGAGGAGGGGAGCCCGCAATGTAAG
AAACTCGGGCGTGGAGTAGTTAGGTCGACAAAGACACTGGCCAACAGTCGGCAGAGGTTCTGGA
CTCAGAACAGAGTTAGGGGCATGCACTGTGGCATTCCCTCGTGATCTTGGAGACTCCGCTCTCC
GGGAAGGATCACGCACGAAAGAGGCGGACGCTCCGTGTGTGCTGTGTCCACGTGTGCAAGCTCG
CGAGGCAAGGGGGCGCGGAAGCCGTGACAAAGACGAACTTTGTGTCTCGGTGTGTTCCTCGCTC
CAGCCGGGAGCAGCGAACTGTGGTAGGGATGTGTCTCATGGGAAAGCCAGGACGAAAGTGACAA
AGGTTGGGTGTCTGTTATGAGGAGACGCGCCAAGGTGGCCACCATGCGTCCGTGGGTGCGTGCG
ATCACTGAGGGATACAGCCTAGGGGTGTATGGGACTGCACCCGGAGCAGCTTTCGGGAGAGAAA
GGCGAGTCCAGAAAGTGAGTACGCGCAAGTGTGCGCGCGCCCGCGTGTGGGGGCGTGGCAGTAA
ACAGCAACAACCCACTCGTCAGTTTGGCCAGAAACTCGAATCTCCCTTCCCAACCCAAAAGTGC
ACGGCGGCTGAGCCTGGAGGGACCCAGCTGAAGCCTGGCCTAGGAGCCAGGATGGCCACCCATA
AAACCTTGCTGATGTGCCTAGGACTGCCTCTCTTCTTCCCGGGAGCCTTGGCCCAGAATCATGC
CCCACCTGGCTGTAGCCCAGACCTGGATCCCCTCTACTACAACCTTTGTGACCGCTCGGGGGCC
TGGGGCATTGTCTTGGAGGCAGTGGCCGGGGCAGGCATCATCACGACCTTTGTGCTAACCATTA
TCCTTGTGGCTAGCCTCCCATTTGTGCAGGACACTAAGAAGCGGAGTCTCCTGGGGACCCAAGT
GTTCTTCCTGCTGGGCACCCTGGGCCTCTTCTGCCTCGTGTTTGCCTGCGTGGTGAAGCCAGAC
TTCTCGACCTGTGCCTCTCGACGGTTCCTCTTTGGGGTCCTGTTTGCCATCTGCTTCTCCTGCC
TGATAGCCCACACCCTCTCCCTCAACTTCCTAGCCCGGAAGAACCATGGGCCCCGAGGCTGGGT
TATCTTCACTGTGGCTCTGCTTCTCACCCTTGTGGAGGTCATCATTAACACCGAGTGGTTGATT
ATCACCCTGGTACGGGGAGGCGGCCAGGTTAGCACCCCGGGCAATGGCAGCGCCGACTGGACCG
TGACCTCTCCGTGTGCCATTGCCAACATGGACTTTGTCATGGCCCTCATTTACGTAATGCTGCT
GCTGCTGGCGGCCTTCCTAGGAGCCTGGCCCACCTTGTGTGGCCGCTTTAAGCGCTGGCGGAAG
CACGGGGTCTTTGTGTTGCTCACCACGGCCACCTCCATTGCCATCTGGGTGGTGTGGATTGTCA
TGTACACCTACGGCAATAAGCAGCACCATAGCCCCACCTGGGATGACCCCACACTGGCCATTGC
GCTCGCTGCCAATGCCTGGACTTTTGTCTTCTTCTATGTCATCCCTGAGGTCTCCCAAGTGACC
AAACCCAGCCCAGAACAGAGCTACCAGGGGGACATGTACCCGACCCGAGGGGTGGGCTACGAGA
CCCTCCTGAAGGAGCAGACGGGCCCGAGCATGTTTGTGGAGAACAAGGCATTTTCTATGGATGA
ACCAGCCTCAGCAAAGAGACCGGTGTCGCCTTACAGTGGCTACAATGGTCAGCTGCTGACCAGC
GTGTACCAGCCCACCGAGATGGCCCTGATGCACAAAGGCCCGTCTGAAGGTGCGTACGACGTCA
TCCTCCCACGGGCCACCGCCAACAGCCAGGTGATGGGCAGTGCCAACTCAACCCTGCGAGCTGA
AGACATGTACATGGTCCAGAGCCACCAGGTGGCCACGCCAACGAAAGACGGCAAGATCTCTCAG
GATCAGTCCCCGAAAAATAAAACAAGATGGTAGATGCCCTCTTCCCTGGACCACACCTCATCCG
GATCCCTCATTGCTCTGCATCCAGCTGAGCAGGGCCCAGCCGCTTCCCCATCTTTGTTGTCCTT
GGAGCTGGGAGGGACCAGAGGCCACCAATTTGAAGCAGTGGACTGAGTGGGACCTTGGGATAGG
CCTGAAGCATGTGACTGGTGCTCACATAGGGCCACATATCCCTTTGCCCATCCCAGCTTCCTGG
TACCCAAGAAACTGCAGCTACCGGGAGTTGACTCCCATCTCCTGCCTTAGCACACCGCCCAGGT
CACAGAGTCTGTGTCCCTATGTGGTTCTCCGGGTTATTGTCCCGCTGTGAACGTCAGTTGCGTG
ATGGACCCTCTTGGCCGTGTTAGTAACCTGTTGCCCCTTCCCCTACTTAGGGCCTGCTGTACCT
TCTAGACTTCCAGAAGGTCACCGGCTAGGTTGGTCAGGCTGTTTCTCATGACCTGAGAGTCCCA
GGTCTCAGCACCTTTGAACATGGACTGAGTCTCCTCTACCTTCAGTGGGTTGTGTCCCCTCACC
AGGGCAGGACCAGTCTGCCTGTTCTGTTCTTCCCGCTGCCCATCATCATGGAGATGGCAGTAAC
ATCTGTCCCACCTGGGGAAGCTTTTGTTGTCCAGCCCTGCCGCACAGAGAACCCACATAAGACT
TGAAGAGCCGGTGGGCCACGGTGGTGCCAGGGCTTTGTACCATTTCTGTACCTCGGCTAATCCC
CTCGCTGAATCTCTTCCAGTCTGCTTTTGGCTTCTGCGCCAGCTCCCAGGGTCGCTCCTGGGAC
AGGCGCAGATGTGGACGTCTCTGAATTACCTGGCTCTCACACATTCTGGAGGTACCTGCTTGGC
TATCAGGACATAAGTGGTTGGGGTCTGGGAGTACCCTTAGGAGACAGTGGGTGGGAGTCAGGGC
TGCATTCTCAGGGTGAGTTGAACCTTTCCTGCGTCTGACTGGTGGGATGGGTCCAGGACTTCAG
GTTGCTTATGGAATGATGTCTACCTCAGCTTGGGCAGTGGACGCCCTTGGGACACCTAGACCTG
CTCTACTGTTTTCATCATTAGAGGAGTGTCTTTGGCCTGAAGACATGCGCCAGAGGGACCCGAT
GTCCACTCAGGTCAGAGAGGGCCATTTTCAGGCTTGCAAGCTGCTGACACCGGTGGCTGAGATG
GTGTCATGGTACCGGACCCTGAAATTGAGATCTCCAGAGCATCACCCTTCCTTCTACTCTTGGG
TACCACACAGAGCCTCTTCTGGGGGCACCCCCTCCGTGTGCTAACCTGGCCCTTAGCCCAGCGC
TGCTGAGCATCAAGGTTGAGGTAAAGATGAGAGGCTTCCTCATGCTTAGTTCTCATGCTGTTCC
CCAGCAGCCTGTGCCTTTGATCTTCGGGTGACAGGTTCCCACAGAGTAGGACTGTACCTGCAAA
TGTGACTCTTCCTGCCTTGAGCTCTTGCTGAGTGAGAATGCACAGCCTTCCACAAGGAAAGTGG
GGCTCTCCATCGCACCTCATGCTGTTCTTGATCTAGAGCCCCAAGATCTGCCACAGTAAGCAAG
GGACTATTTTGCTGTCTCAAGTGAGTCCTTTAGGACTCAGAAAGCTCCAGATCCCTAGGTGTGT
TGCCTGTGGTGGGTGTGGCCGTGTTTATAGTTCAAGTCCTGCCTACAGCTAAAGCTGAGGAGTG
ATGGGTTCCTGGAGGATGCAGGCCTGCCAGGATTTGGGAGTGTCATGGTTACCCTGCGTCTTCT
AGTTCCTGTTCAGTGAAGAAGTACTTTTTTTTTTTTCTTTAAGGAGGGCTGGGGAACCTCCCAA
TTAACAGCTCTGAATCTTACACAAGCCTTGAATGGGGAGACATCAAGTAGGTCCAGGCTTGATC
TAAGCTTCTCATTTGCAGGCTACTATCCCTTAATAGATGTCACACCGACACTGTTAAATCCCGT
AGTGGATGTAAAGCGAGGCTCAACCTTGTAACTGCTCAAAATTAAATGACTGCCCTTTCTTTGT
GAGGGGGTTACTGCCTCTGTT

hide sequence

RefSeq Acc Id:

XM_006247681 ⟹ XP_006247743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,386,818 - 100,407,953 (+)	NCBI
mRatBN7.2	10	99,887,850 - 99,908,928 (+)	NCBI
Rnor_6.0	10	103,396,257 - 103,417,360 (+)	NCBI
Rnor_5.0	10	103,049,565 - 103,073,773 (+)	NCBI

Sequence:

show sequence

CGGCCCACCCTGGCCGAGAAAGGGGAGCACTGTGCCTGGGGAGGCGGGCGGGAGAGCGAGCCAC
TGAGCGCGCGCAGCTCAGTCGGGGGTCCGGGGGAGGCAGGCCCCGCACCTCTGCTCCGGCCTGG
TCACCCCTCCCGCCGTAACGAGCTCTGGCCCTGCGCCCTGCCTTGAGTCCCTCCTACGCCCGCG
GGCGCCCTGCCTGGGGCCGAAGTTGGCTCTATGCGGCGCGCTGGAGCGGGCTGGCTGCGCGTCC
CAGGGACCCAGCTGAAGCCTGGCCTAGGAGCCAGGATGGCCACCCATAAAACCTTGCTGATGTG
CCTAGGACTGCCTCTCTTCTTCCCGGGAGCCTTGGCCCAGAATCATGCCCCACCTGGCTGTAGC
CCAGACCTGGATCCCCTCTACTACAACCTTTGTGACCGCTCGGGGGCCTGGGGCATTGTCTTGG
AGGCAGTGGCCGGGGCAGGCATCATCACGACCTTTGTGCTAACCATTATCCTTGTGGCTAGCCT
CCCATTTGTGCAGGACACTAAGAAGCGGAGTCTCCTGGGGACCCAAGTGTTCTTCCTGCTGGGC
ACCCTGGGCCTCTTCTGCCTCGTGTTTGCCTGCGTGGTGAAGCCAGACTTCTCGACCTGTGCCT
CTCGACGGTTCCTCTTTGGGGTCCTGTTTGCCATCTGCTTCTCCTGCCTGATAGCCCACACCCT
CTCCCTCAACTTCCTAGCCCGGAAGAACCATGGGCCCCGAGGCTGGGTTATCTTCACTGTGGCT
CTGCTTCTCACCCTTGTGGAGGTCATCATTAACACCGAGTGGTTGATTATCACCCTGGTACGGG
GAGGCGGCCAGGTTAGCACCCCGGGCAATGGCAGCGCCGACTGGACCGTGACCTCTCCGTGTGC
CATTGCCAACATGGACTTTGTCATGGCCCTCATTTACGTAATGCTGCTGCTGCTGGCGGCCTTC
CTAGGAGCCTGGCCCACCTTGTGTGGCCGCTTTAAGCGCTGGCGGAAGCACGGGGTCTTTGTGT
TGCTCACCACGGCCACCTCCATTGCCATCTGGGTGGTGTGGATTGTCATGTACACCTACGGCAA
TAAGCAGCACCATAGCCCCACCTGGGATGACCCCACACTGGCCATTGCGCTCGCTGCCAATGCC
TGGACTTTTGTCTTCTTCTATGTCATCCCTGAGGTCTCCCAAGTGACCAAACCCAGCCCAGAAC
AGAGCTACCAGGGGGACATGTACCCGACCCGAGGGGTGGGCTACGAGACCCTCCTGAAGGAGCA
GACGGGCCCGAGCATGTTTGTGGAGAACAAGGCATTTTCTATGGATGAACCAGCCTCAGCAAAG
AGACCGGTGTCGCCTTACAGTGGCTACAATGGTCAGCTGCTGACCAGCGTGTACCAGCCCACCG
AGATGGCCCTGATGCACAAAGGCCCGTCTGAAGGTGCGTACGACGTCATCCTCCCACGGGCCAC
CGCCAACAGCCAGGTGATGGGCAGTGCCAACTCAACCCTGCGAGCTGAAGACATGTACATGGTC
CAGAGCCACCAGGTGGCCACGCCAACGAAAGACGGCAAGATCTCTCAGGATCAGTCCCCGAAAA
ATAAAACAAGATGGTAGATGCCCTCTTCCCTGGACCACACCTCATCCGGATCCCTCATTGCTCT
GCATCCAGCTGAGCAGGGCCCAGCCGCTTCCCCATCTTTGTTGTCCTTGGAGCTGGGAGGGACC
AGAGGCCACCAATTTGAAGCAGTGGACTGAGTGGGACCTTGGGATAGGCCTGAAGCATGTGACT
GGTGCTCACATAGGGCCACATATCCCTTTGCCCATCCCAGCTTCCTGGTACCCAAGAAACTGCA
GCTACCGGGAGTTGACTCCCATCTCCTGCCTTAGCACACCGCCCAGGTCACAGAGTCTGTGTCC
CTATGTGGTTCTCCGGGTTATTGTCCCGCTGTGAACGTCAGTTGCGTGATGGACCCTCTTGGCC
GTGTTAGTAACCTGTTGCCCCTTCCCCTACTTAGGGCCTGCTGTACCTTCTAGACTTCCAGAAG
GTCACCGGCTAGGTTGGTCAGGCTGTTTCTCATGACCTGAGAGTCCCAGGTCTCAGCACCTTTG
AACATGGACTGAGTCTCCTCTACCTTCAGTGGGTTGTGTCCCCTCACCAGGGCAGGACCAGTCT
GCCTGTTCTGTTCTTCCCGCTGCCCATCATCATGGAGATGGCAGTAACATCTGTCCCACCTGGG
GAAGCTTTTGTTGTCCAGCCCTGCCGCACAGAGAACCCACATAAGACTTGAAGAGCCGGTGGGC
CACGGTGGTGCCAGGGCTTTGTACCATTTCTGTACCTCGGCTAATCCCCTCGCTGAATCTCTTC
CAGTCTGCTTTTGGCTTCTGCGCCAGCTCCCAGGGTCGCTCCTGGGACAGGCGCAGATGTGGAC
GTCTCTGAATTACCTGGCTCTCACACATTCTGGAGGTACCTGCTTGGCTATCAGGACATAAGTG
GTTGGGGTCTGGGAGTACCCTTAGGAGACAGTGGGTGGGAGTCAGGGCTGCATTCTCAGGGTGA
GTTGAACCTTTCCTGCGTCTGACTGGTGGGATGGGTCCAGGACTTCAGGTTGCTTATGGAATGA
TGTCTACCTCAGCTTGGGCAGTGGACGCCCTTGGGACACCTAGACCTGCTCTACTGTTTTCATC
ATTAGAGGAGTGTCTTTGGCCTGAAGACATGCGCCAGAGGGACCCGATGTCCACTCAGGTCAGA
GAGGGCCATTTTCAGGCTTGCAAGCTGCTGACACCGGTGGCTGAGATGGTGTCATGGTACCGGA
CCCTGAAATTGAGATCTCCAGAGCATCACCCTTCCTTCTACTCTTGGGTACCACACAGAGCCTC
TTCTGGGGGCACCCCCTCCGTGTGCTAACCTGGCCCTTAGCCCAGCGCTGCTGAGCATCAAGGT
TGAGGTAAAGATGAGAGGCTTCCTCATGCTTAGTTCTCATGCTGTTCCCCAGCAGCCTGTGCCT
TTGATCTTCGGGTGACAGGTTCCCACAGAGTAGGACTGTACCTGCAAATGTGACTCTTCCTGCC
TTGAGCTCTTGCTGAGTGAGAATGCACAGCCTTCCACAAGGAAAGTGGGGCTCTCCATCGCACC
TCATGCTGTTCTTGATCTAGAGCCCCAAGATCTGCCACAGTAAGCAAGGGACTATTTTGCTGTC
TCAAGTGAGTCCTTTAGGACTCAGAAAGCTCCAGATCCCTAGGTGTGTTGCCTGTGGTGGGTGT
GGCCGTGTTTATAGTTCAAGTCCTGCCTACAGCTAAAGCTGAGGAGTGATGGGTTCCTGGAGGA
TGCAGGCCTGCCAGGATTTGGGAGTGTCATGGTTACCCTGCGTCTTCTAGTTCCTGTTCAGTGA
AGAAGTACTTTTTTTTTTTTCTTTAAGGAGGGCTGGGGAACCTCCCAATTAACAGCTCTGAATC
TTACACAAGCCTTGAATGGGGAGACATCAAGTAGGTCCAGGCTTGATCTAAGCTTCTCATTTGC
AGGCTACTATCCCTTAATAGATGTCACACCGACACTGTTAAATCCCGTAGTGGATGTAAAGCGA
GGCTCAACCTTGTAACTGCTCAAAATTAAATGACTGCCCTTTCTTTGTGAGGGGGTTACTGCCT
CTGTT

hide sequence

RefSeq Acc Id:

XM_006247682 ⟹ XP_006247744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,385,972 - 100,407,953 (+)	NCBI
mRatBN7.2	10	99,886,932 - 99,908,928 (+)	NCBI
Rnor_6.0	10	103,396,144 - 103,417,360 (+)	NCBI
Rnor_5.0	10	103,049,565 - 103,073,773 (+)	NCBI

Sequence:

show sequence

CGGAGGGGGCAGGGCCGGCCGCGCTTTGTTACTGGTGAGGATTGCTAGTACCTGGAGCACTGCT
GGCCCCGGAGGAGCGCCCCGAATGGAGGGACCCAGCTGAAGCCTGGCCTAGGAGCCAGGATGGC
CACCCATAAAACCTTGCTGATGTGCCTAGGACTGCCTCTCTTCTTCCCGGGAGCCTTGGCCCAG
AATCATGCCCCACCTGGCTGTAGCCCAGACCTGGATCCCCTCTACTACAACCTTTGTGACCGCT
CGGGGGCCTGGGGCATTGTCTTGGAGGCAGTGGCCGGGGCAGGCATCATCACGACCTTTGTGCT
AACCATTATCCTTGTGGCTAGCCTCCCATTTGTGCAGGACACTAAGAAGCGGAGTCTCCTGGGG
ACCCAAGTGTTCTTCCTGCTGGGCACCCTGGGCCTCTTCTGCCTCGTGTTTGCCTGCGTGGTGA
AGCCAGACTTCTCGACCTGTGCCTCTCGACGGTTCCTCTTTGGGGTCCTGTTTGCCATCTGCTT
CTCCTGCCTGATAGCCCACACCCTCTCCCTCAACTTCCTAGCCCGGAAGAACCATGGGCCCCGA
GGCTGGGTTATCTTCACTGTGGCTCTGCTTCTCACCCTTGTGGAGGTCATCATTAACACCGAGT
GGTTGATTATCACCCTGGTACGGGGAGGCGGCCAGGTTAGCACCCCGGGCAATGGCAGCGCCGA
CTGGACCGTGACCTCTCCGTGTGCCATTGCCAACATGGACTTTGTCATGGCCCTCATTTACGTA
ATGCTGCTGCTGCTGGCGGCCTTCCTAGGAGCCTGGCCCACCTTGTGTGGCCGCTTTAAGCGCT
GGCGGAAGCACGGGGTCTTTGTGTTGCTCACCACGGCCACCTCCATTGCCATCTGGGTGGTGTG
GATTGTCATGTACACCTACGGCAATAAGCAGCACCATAGCCCCACCTGGGATGACCCCACACTG
GCCATTGCGCTCGCTGCCAATGCCTGGACTTTTGTCTTCTTCTATGTCATCCCTGAGGTCTCCC
AAGTGACCAAACCCAGCCCAGAACAGAGCTACCAGGGGGACATGTACCCGACCCGAGGGGTGGG
CTACGAGACCCTCCTGAAGGAGCAGACGGGCCCGAGCATGTTTGTGGAGAACAAGGCATTTTCT
ATGGATGAACCAGCCTCAGCAAAGAGACCGGTGTCGCCTTACAGTGGCTACAATGGTCAGCTGC
TGACCAGCGTGTACCAGCCCACCGAGATGGCCCTGATGCACAAAGGCCCGTCTGAAGGTGCGTA
CGACGTCATCCTCCCACGGGCCACCGCCAACAGCCAGGTGATGGGCAGTGCCAACTCAACCCTG
CGAGCTGAAGACATGTACATGGTCCAGAGCCACCAGGTGGCCACGCCAACGAAAGACGGCAAGA
TCTCTCAGGATCAGTCCCCGAAAAATAAAACAAGATGGTAGATGCCCTCTTCCCTGGACCACAC
CTCATCCGGATCCCTCATTGCTCTGCATCCAGCTGAGCAGGGCCCAGCCGCTTCCCCATCTTTG
TTGTCCTTGGAGCTGGGAGGGACCAGAGGCCACCAATTTGAAGCAGTGGACTGAGTGGGACCTT
GGGATAGGCCTGAAGCATGTGACTGGTGCTCACATAGGGCCACATATCCCTTTGCCCATCCCAG
CTTCCTGGTACCCAAGAAACTGCAGCTACCGGGAGTTGACTCCCATCTCCTGCCTTAGCACACC
GCCCAGGTCACAGAGTCTGTGTCCCTATGTGGTTCTCCGGGTTATTGTCCCGCTGTGAACGTCA
GTTGCGTGATGGACCCTCTTGGCCGTGTTAGTAACCTGTTGCCCCTTCCCCTACTTAGGGCCTG
CTGTACCTTCTAGACTTCCAGAAGGTCACCGGCTAGGTTGGTCAGGCTGTTTCTCATGACCTGA
GAGTCCCAGGTCTCAGCACCTTTGAACATGGACTGAGTCTCCTCTACCTTCAGTGGGTTGTGTC
CCCTCACCAGGGCAGGACCAGTCTGCCTGTTCTGTTCTTCCCGCTGCCCATCATCATGGAGATG
GCAGTAACATCTGTCCCACCTGGGGAAGCTTTTGTTGTCCAGCCCTGCCGCACAGAGAACCCAC
ATAAGACTTGAAGAGCCGGTGGGCCACGGTGGTGCCAGGGCTTTGTACCATTTCTGTACCTCGG
CTAATCCCCTCGCTGAATCTCTTCCAGTCTGCTTTTGGCTTCTGCGCCAGCTCCCAGGGTCGCT
CCTGGGACAGGCGCAGATGTGGACGTCTCTGAATTACCTGGCTCTCACACATTCTGGAGGTACC
TGCTTGGCTATCAGGACATAAGTGGTTGGGGTCTGGGAGTACCCTTAGGAGACAGTGGGTGGGA
GTCAGGGCTGCATTCTCAGGGTGAGTTGAACCTTTCCTGCGTCTGACTGGTGGGATGGGTCCAG
GACTTCAGGTTGCTTATGGAATGATGTCTACCTCAGCTTGGGCAGTGGACGCCCTTGGGACACC
TAGACCTGCTCTACTGTTTTCATCATTAGAGGAGTGTCTTTGGCCTGAAGACATGCGCCAGAGG
GACCCGATGTCCACTCAGGTCAGAGAGGGCCATTTTCAGGCTTGCAAGCTGCTGACACCGGTGG
CTGAGATGGTGTCATGGTACCGGACCCTGAAATTGAGATCTCCAGAGCATCACCCTTCCTTCTA
CTCTTGGGTACCACACAGAGCCTCTTCTGGGGGCACCCCCTCCGTGTGCTAACCTGGCCCTTAG
CCCAGCGCTGCTGAGCATCAAGGTTGAGGTAAAGATGAGAGGCTTCCTCATGCTTAGTTCTCAT
GCTGTTCCCCAGCAGCCTGTGCCTTTGATCTTCGGGTGACAGGTTCCCACAGAGTAGGACTGTA
CCTGCAAATGTGACTCTTCCTGCCTTGAGCTCTTGCTGAGTGAGAATGCACAGCCTTCCACAAG
GAAAGTGGGGCTCTCCATCGCACCTCATGCTGTTCTTGATCTAGAGCCCCAAGATCTGCCACAG
TAAGCAAGGGACTATTTTGCTGTCTCAAGTGAGTCCTTTAGGACTCAGAAAGCTCCAGATCCCT
AGGTGTGTTGCCTGTGGTGGGTGTGGCCGTGTTTATAGTTCAAGTCCTGCCTACAGCTAAAGCT
GAGGAGTGATGGGTTCCTGGAGGATGCAGGCCTGCCAGGATTTGGGAGTGTCATGGTTACCCTG
CGTCTTCTAGTTCCTGTTCAGTGAAGAAGTACTTTTTTTTTTTTCTTTAAGGAGGGCTGGGGAA
CCTCCCAATTAACAGCTCTGAATCTTACACAAGCCTTGAATGGGGAGACATCAAGTAGGTCCAG
GCTTGATCTAAGCTTCTCATTTGCAGGCTACTATCCCTTAATAGATGTCACACCGACACTGTTA
AATCCCGTAGTGGATGTAAAGCGAGGCTCAACCTTGTAACTGCTCAAAATTAAATGACTGCCCT
TTCTTTGTGAGGGGGTTACTGCCTCTGTT

hide sequence

RefSeq Acc Id:

XM_006247685 ⟹ XP_006247747

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,387,166 - 100,407,953 (+)	NCBI
mRatBN7.2	10	99,888,136 - 99,908,928 (+)	NCBI
Rnor_6.0	10	103,396,523 - 103,417,360 (+)	NCBI
Rnor_5.0	10	103,049,565 - 103,073,773 (+)	NCBI

Sequence:

show sequence

CTGCCTCCTCGGCCGGCGCTCCGCCCTTGCCATCGGCCTGCAGGAAGGGCTGGGTCCAGCTGTC
TCGGAAAGGGACAGGGTCAAGGCCCCTGGGACCCAGCTGAAGCCTGGCCTAGGAGCCAGGATGG
CCACCCATAAAACCTTGCTGATGTGCCTAGGACTGCCTCTCTTCTTCCCGGGAGCCTTGGCCCA
GAATCATGCCCCACCTGGCTGTAGCCCAGACCTGGATCCCCTCTACTACAACCTTTGTGACCGC
TCGGGGGCCTGGGGCATTGTCTTGGAGGCAGTGGCCGGGGCAGGCATCATCACGACCTTTGTGC
TAACCATTATCCTTGTGGCTAGCCTCCCATTTGTGCAGGACACTAAGAAGCGGAGTCTCCTGGG
GACCCAAGTGTTCTTCCTGCTGGGCACCCTGGGCCTCTTCTGCCTCGTGTTTGCCTGCGTGGTG
AAGCCAGACTTCTCGACCTGTGCCTCTCGACGGTTCCTCTTTGGGGTCCTGTTTGCCATCTGCT
TCTCCTGCCTGATAGCCCACACCCTCTCCCTCAACTTCCTAGCCCGGAAGAACCATGGGCCCCG
AGGCTGGGTTATCTTCACTGTGGCTCTGCTTCTCACCCTTGTGGAGGTCATCATTAACACCGAG
TGGTTGATTATCACCCTGGTACGGGGAGGCGGCCAGGTTAGCACCCCGGGCAATGGCAGCGCCG
ACTGGACCGTGACCTCTCCGTGTGCCATTGCCAACATGGACTTTGTCATGGCCCTCATTTACGT
AATGCTGCTGCTGCTGGCGGCCTTCCTAGGAGCCTGGCCCACCTTGTGTGGCCGCTTTAAGCGC
TGGCGGAAGCACGGGGTCTTTGTGTTGCTCACCACGGCCACCTCCATTGCCATCTGGGTGGTGT
GGATTGTCATGTACACCTACGGCAATAAGCAGCACCATAGCCCCACCTGGGATGACCCCACACT
GGCCATTGCGCTCGCTGCCAATGCCTGGACTTTTGTCTTCTTCTATGTCATCCCTGAGGTCTCC
CAAGTGACCAAACCCAGCCCAGAACAGAGCTACCAGGGGGACATGTACCCGACCCGAGGGGTGG
GCTACGAGACCCTCCTGAAGGAGCAGACGGGCCCGAGCATGTTTGTGGAGAACAAGGCATTTTC
TATGGATGAACCAGCCTCAGCAAAGAGACCGGTGTCGCCTTACAGTGGCTACAATGGTCAGCTG
CTGACCAGCGTGTACCAGCCCACCGAGATGGCCCTGATGCACAAAGGCCCGTCTGAAGGTGCGT
ACGACGTCATCCTCCCACGGGCCACCGCCAACAGCCAGGTGATGGGCAGTGCCAACTCAACCCT
GCGAGCTGAAGACATGTACATGGTCCAGAGCCACCAGGTGGCCACGCCAACGAAAGACGGCAAG
ATCTCTCAGGATCAGTCCCCGAAAAATAAAACAAGATGGTAGATGCCCTCTTCCCTGGACCACA
CCTCATCCGGATCCCTCATTGCTCTGCATCCAGCTGAGCAGGGCCCAGCCGCTTCCCCATCTTT
GTTGTCCTTGGAGCTGGGAGGGACCAGAGGCCACCAATTTGAAGCAGTGGACTGAGTGGGACCT
TGGGATAGGCCTGAAGCATGTGACTGGTGCTCACATAGGGCCACATATCCCTTTGCCCATCCCA
GCTTCCTGGTACCCAAGAAACTGCAGCTACCGGGAGTTGACTCCCATCTCCTGCCTTAGCACAC
CGCCCAGGTCACAGAGTCTGTGTCCCTATGTGGTTCTCCGGGTTATTGTCCCGCTGTGAACGTC
AGTTGCGTGATGGACCCTCTTGGCCGTGTTAGTAACCTGTTGCCCCTTCCCCTACTTAGGGCCT
GCTGTACCTTCTAGACTTCCAGAAGGTCACCGGCTAGGTTGGTCAGGCTGTTTCTCATGACCTG
AGAGTCCCAGGTCTCAGCACCTTTGAACATGGACTGAGTCTCCTCTACCTTCAGTGGGTTGTGT
CCCCTCACCAGGGCAGGACCAGTCTGCCTGTTCTGTTCTTCCCGCTGCCCATCATCATGGAGAT
GGCAGTAACATCTGTCCCACCTGGGGAAGCTTTTGTTGTCCAGCCCTGCCGCACAGAGAACCCA
CATAAGACTTGAAGAGCCGGTGGGCCACGGTGGTGCCAGGGCTTTGTACCATTTCTGTACCTCG
GCTAATCCCCTCGCTGAATCTCTTCCAGTCTGCTTTTGGCTTCTGCGCCAGCTCCCAGGGTCGC
TCCTGGGACAGGCGCAGATGTGGACGTCTCTGAATTACCTGGCTCTCACACATTCTGGAGGTAC
CTGCTTGGCTATCAGGACATAAGTGGTTGGGGTCTGGGAGTACCCTTAGGAGACAGTGGGTGGG
AGTCAGGGCTGCATTCTCAGGGTGAGTTGAACCTTTCCTGCGTCTGACTGGTGGGATGGGTCCA
GGACTTCAGGTTGCTTATGGAATGATGTCTACCTCAGCTTGGGCAGTGGACGCCCTTGGGACAC
CTAGACCTGCTCTACTGTTTTCATCATTAGAGGAGTGTCTTTGGCCTGAAGACATGCGCCAGAG
GGACCCGATGTCCACTCAGGTCAGAGAGGGCCATTTTCAGGCTTGCAAGCTGCTGACACCGGTG
GCTGAGATGGTGTCATGGTACCGGACCCTGAAATTGAGATCTCCAGAGCATCACCCTTCCTTCT
ACTCTTGGGTACCACACAGAGCCTCTTCTGGGGGCACCCCCTCCGTGTGCTAACCTGGCCCTTA
GCCCAGCGCTGCTGAGCATCAAGGTTGAGGTAAAGATGAGAGGCTTCCTCATGCTTAGTTCTCA
TGCTGTTCCCCAGCAGCCTGTGCCTTTGATCTTCGGGTGACAGGTTCCCACAGAGTAGGACTGT
ACCTGCAAATGTGACTCTTCCTGCCTTGAGCTCTTGCTGAGTGAGAATGCACAGCCTTCCACAA
GGAAAGTGGGGCTCTCCATCGCACCTCATGCTGTTCTTGATCTAGAGCCCCAAGATCTGCCACA
GTAAGCAAGGGACTATTTTGCTGTCTCAAGTGAGTCCTTTAGGACTCAGAAAGCTCCAGATCCC
TAGGTGTGTTGCCTGTGGTGGGTGTGGCCGTGTTTATAGTTCAAGTCCTGCCTACAGCTAAAGC
TGAGGAGTGATGGGTTCCTGGAGGATGCAGGCCTGCCAGGATTTGGGAGTGTCATGGTTACCCT
GCGTCTTCTAGTTCCTGTTCAGTGAAGAAGTACTTTTTTTTTTTTCTTTAAGGAGGGCTGGGGA
ACCTCCCAATTAACAGCTCTGAATCTTACACAAGCCTTGAATGGGGAGACATCAAGTAGGTCCA
GGCTTGATCTAAGCTTCTCATTTGCAGGCTACTATCCCTTAATAGATGTCACACCGACACTGTT
AAATCCCGTAGTGGATGTAAAGCGAGGCTCAACCTTGTAACTGCTCAAAATTAAATGACTGCCC
TTTCTTTGTGAGGGGGTTACTGCCTCTGTT

hide sequence

RefSeq Acc Id:

XM_017597153 ⟹ XP_017452642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,385,972 - 100,407,953 (+)	NCBI
mRatBN7.2	10	99,886,932 - 99,908,928 (+)	NCBI
Rnor_6.0	10	103,395,222 - 103,417,360 (+)	NCBI

Sequence:

show sequence

GCCACAGAGGTCTCAGCTGGGATTCGCTTCCCTATTTCTGCGGTTTCTTTTCAGCAGATTCCTG
GGGCTGGAGGAGAAAGGGTGGATCCACCCGGTAGGGATTGGGGGTGTGGTTCAAGGGAATCTGA
ATTCGCGGAAAGGTCTCTGGACTGCGGGAGAGGCCAGACTCGGAATCAGCAACAACGTGGCCAG
GAGCGCACAGACCACAGGGATCACATTAAACACTGTACCTCGGGGAACAAAATTGAGAAGGCTA
ATTAGGACAGGTCACCACAGGGAACCGGAACACGGGGAGGGGAGGAGGGGAGCCCGCAATGTAA
GAAACTCGGGCGTGGAGTAGTTAGGTCGACAAAGACACTGGCCAACAGTCGGCAGAGGTTCTGG
ACTCAGAACAGAGTTAGGGGCATGCACTGTGGCATTCCCTCGTGATCTTGGAGACTCCGCTCTC
CGGGAAGGATCACGCACGAAAGAGGCGGACGCTCCGTGTGTGCTGTGTCCACGTGTGCAAGCTC
GCGAGGCAAGGGGGCGCGGAAGCCGTGACAAAGACGAACTTTGTGTCTCGGTGTGTTCCTCGCT
CCAGCCGGGAGCAGCGAACTGTGGTAGGGATGTGTCTCATGGGAAAGCCAGGACGAAAGTGACA
AAGGTTGGGTGTCTGTTATGAGGAGACGCGCCAAGGTGGCCACCATGCGTCCGTGGGTGCGTGC
GATCACTGAGGGATACAGCCTAGGGGTGTATGGGACTGCACCCGGAGCAGCTTTCGGGAGAGAA
AGGCGAGTCCAGAAAGGACCCAGCTGAAGCCTGGCCTAGGAGCCAGGATGGCCACCCATAAAAC
CTTGCTGATGTGCCTAGGACTGCCTCTCTTCTTCCCGGGAGCCTTGGCCCAGAATCATGCCCCA
CCTGGCTGTAGCCCAGACCTGGATCCCCTCTACTACAACCTTTGTGACCGCTCGGGGGCCTGGG
GCATTGTCTTGGAGGCAGTGGCCGGGGCAGGCATCATCACGACCTTTGTGCTAACCATTATCCT
TGTGGCTAGCCTCCCATTTGTGCAGGACACTAAGAAGCGGAGTCTCCTGGGGACCCAAGTGTTC
TTCCTGCTGGGCACCCTGGGCCTCTTCTGCCTCGTGTTTGCCTGCGTGGTGAAGCCAGACTTCT
CGACCTGTGCCTCTCGACGGTTCCTCTTTGGGGTCCTGTTTGCCATCTGCTTCTCCTGCCTGAT
AGCCCACACCCTCTCCCTCAACTTCCTAGCCCGGAAGAACCATGGGCCCCGAGGCTGGGTTATC
TTCACTGTGGCTCTGCTTCTCACCCTTGTGGAGGTCATCATTAACACCGAGTGGTTGATTATCA
CCCTGGTACGGGGAGGCGGCCAGGTTAGCACCCCGGGCAATGGCAGCGCCGACTGGACCGTGAC
CTCTCCGTGTGCCATTGCCAACATGGACTTTGTCATGGCCCTCATTTACGTAATGCTGCTGCTG
CTGGCGGCCTTCCTAGGAGCCTGGCCCACCTTGTGTGGCCGCTTTAAGCGCTGGCGGAAGCACG
GGGTCTTTGTGTTGCTCACCACGGCCACCTCCATTGCCATCTGGGTGGTGTGGATTGTCATGTA
CACCTACGGCAATAAGCAGCACCATAGCCCCACCTGGGATGACCCCACACTGGCCATTGCGCTC
GCTGCCAATGCCTGGACTTTTGTCTTCTTCTATGTCATCCCTGAGGTCTCCCAAGTGACCAAAC
CCAGCCCAGAACAGAGCTACCAGGGGGACATGTACCCGACCCGAGGGGTGGGCTACGAGACCCT
CCTGAAGGAGCAGACGGGCCCGAGCATGTTTGTGGAGAACAAGGCATTTTCTATGGATGAACCA
GCCTCAGCAAAGAGACCGGTGTCGCCTTACAGTGGCTACAATGGTCAGCTGCTGACCAGCGTGT
ACCAGCCCACCGAGATGGCCCTGATGCACAAAGGCCCGTCTGAAGGTGCGTACGACGTCATCCT
CCCACGGGCCACCGCCAACAGCCAGGTGATGGGCAGTGCCAACTCAACCCTGCGAGCTGAAGAC
ATGTACATGGTCCAGAGCCACCAGGTGGCCACGCCAACGAAAGACGGCAAGATCTCTCAGGATC
AGTCCCCGAAAAATAAAACAAGATGGTAGATGCCCTCTTCCCTGGACCACACCTCATCCGGATC
CCTCATTGCTCTGCATCCAGCTGAGCAGGGCCCAGCCGCTTCCCCATCTTTGTTGTCCTTGGAG
CTGGGAGGGACCAGAGGCCACCAATTTGAAGCAGTGGACTGAGTGGGACCTTGGGATAGGCCTG
AAGCATGTGACTGGTGCTCACATAGGGCCACATATCCCTTTGCCCATCCCAGCTTCCTGGTACC
CAAGAAACTGCAGCTACCGGGAGTTGACTCCCATCTCCTGCCTTAGCACACCGCCCAGGTCACA
GAGTCTGTGTCCCTATGTGGTTCTCCGGGTTATTGTCCCGCTGTGAACGTCAGTTGCGTGATGG
ACCCTCTTGGCCGTGTTAGTAACCTGTTGCCCCTTCCCCTACTTAGGGCCTGCTGTACCTTCTA
GACTTCCAGAAGGTCACCGGCTAGGTTGGTCAGGCTGTTTCTCATGACCTGAGAGTCCCAGGTC
TCAGCACCTTTGAACATGGACTGAGTCTCCTCTACCTTCAGTGGGTTGTGTCCCCTCACCAGGG
CAGGACCAGTCTGCCTGTTCTGTTCTTCCCGCTGCCCATCATCATGGAGATGGCAGTAACATCT
GTCCCACCTGGGGAAGCTTTTGTTGTCCAGCCCTGCCGCACAGAGAACCCACATAAGACTTGAA
GAGCCGGTGGGCCACGGTGGTGCCAGGGCTTTGTACCATTTCTGTACCTCGGCTAATCCCCTCG
CTGAATCTCTTCCAGTCTGCTTTTGGCTTCTGCGCCAGCTCCCAGGGTCGCTCCTGGGACAGGC
GCAGATGTGGACGTCTCTGAATTACCTGGCTCTCACACATTCTGGAGGTACCTGCTTGGCTATC
AGGACATAAGTGGTTGGGGTCTGGGAGTACCCTTAGGAGACAGTGGGTGGGAGTCAGGGCTGCA
TTCTCAGGGTGAGTTGAACCTTTCCTGCGTCTGACTGGTGGGATGGGTCCAGGACTTCAGGTTG
CTTATGGAATGATGTCTACCTCAGCTTGGGCAGTGGACGCCCTTGGGACACCTAGACCTGCTCT
ACTGTTTTCATCATTAGAGGAGTGTCTTTGGCCTGAAGACATGCGCCAGAGGGACCCGATGTCC
ACTCAGGTCAGAGAGGGCCATTTTCAGGCTTGCAAGCTGCTGACACCGGTGGCTGAGATGGTGT
CATGGTACCGGACCCTGAAATTGAGATCTCCAGAGCATCACCCTTCCTTCTACTCTTGGGTACC
ACACAGAGCCTCTTCTGGGGGCACCCCCTCCGTGTGCTAACCTGGCCCTTAGCCCAGCGCTGCT
GAGCATCAAGGTTGAGGTAAAGATGAGAGGCTTCCTCATGCTTAGTTCTCATGCTGTTCCCCAG
CAGCCTGTGCCTTTGATCTTCGGGTGACAGGTTCCCACAGAGTAGGACTGTACCTGCAAATGTG
ACTCTTCCTGCCTTGAGCTCTTGCTGAGTGAGAATGCACAGCCTTCCACAAGGAAAGTGGGGCT
CTCCATCGCACCTCATGCTGTTCTTGATCTAGAGCCCCAAGATCTGCCACAGTAAGCAAGGGAC
TATTTTGCTGTCTCAAGTGAGTCCTTTAGGACTCAGAAAGCTCCAGATCCCTAGGTGTGTTGCC
TGTGGTGGGTGTGGCCGTGTTTATAGTTCAAGTCCTGCCTACAGCTAAAGCTGAGGAGTGATGG
GTTCCTGGAGGATGCAGGCCTGCCAGGATTTGGGAGTGTCATGGTTACCCTGCGTCTTCTAGTT
CCTGTTCAGTGAAGAAGTACTTTTTTTTTTTTCTTTAAGGAGGGCTGGGGAACCTCCCAATTAA
CAGCTCTGAATCTTACACAAGCCTTGAATGGGGAGACATCAAGTAGGTCCAGGCTTGATCTAAG
CTTCTCATTTGCAGGCTACTATCCCTTAATAGATGTCACACCGACACTGTTAAATCCCGTAGTG
GATGTAAAGCGAGGCTCAACCTTGTAACTGCTCAAAATTAAATGACTGCCCTTTCTTTGTGAGG
GGGTTACTGCCTCTGTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001178520	(Get FASTA)	NCBI Sequence Viewer
	NP_001426642	(Get FASTA)	NCBI Sequence Viewer
	NP_001426643	(Get FASTA)	NCBI Sequence Viewer
	NP_001426644	(Get FASTA)	NCBI Sequence Viewer
	NP_001426645	(Get FASTA)	NCBI Sequence Viewer
	XP_006247740	(Get FASTA)	NCBI Sequence Viewer
	XP_006247743	(Get FASTA)	NCBI Sequence Viewer
	XP_006247744	(Get FASTA)	NCBI Sequence Viewer
	XP_006247747	(Get FASTA)	NCBI Sequence Viewer
	XP_017452642	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05782	(Get FASTA)	NCBI Sequence Viewer
	AAI68227	(Get FASTA)	NCBI Sequence Viewer
	EDM06549	(Get FASTA)	NCBI Sequence Viewer
	EDM06550	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004256
	ENSRNOP00000074938
	ENSRNOP00000095514
	ENSRNOP00000112496
GenBank Protein	Q3KRC4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001178520 ⟸ NM_001191591
- Peptide Label:	precursor
- UniProtKB:	A0A0G2K9B8 (UniProtKB/TrEMBL), A0A8I5ZNK1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATHKTLLMCLGLPLFFPGALAQNHAPPGCSPDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTF VLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAI CFSCLIAHTLSLNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSTPGNGS ADWTVTSPCAIANMDFVMALIYVMLLLLAAFLGAWPTLCGRFKRWRKHGVFVLLTTATSIAIWV VWIVMYTYGNKQHHSPTWDDPTLAIALAANAWTFVFFYVIPEVSQVTKPSPEQSYQGDMYPTRG VGYETLLKEQTGPSMFVENKAFSMDEPASAKRPVSPYSGYNGQLLTSVYQPTEMALMHKGPSEG AYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQVATPTKDGKISQVFRNPYVWD hide sequence

RefSeq Acc Id:	XP_006247740 ⟸ XM_006247678
- Peptide Label:	isoform X1
- UniProtKB:	F1LRW5 (UniProtKB/TrEMBL), A0A8I5ZNK1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRRAKVATMRPWVRAITEGYSLGVYGTAPGAAFGRERRVQKVSTRKCARARVWGRGSKQQQPT RQFGQKLESPFPTQKCTAAEPGGTQLKPGLGARMATHKTLLMCLGLPLFFPGALAQNHAPPGCS PDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLG TLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLIAHTLSLNFLARKNHGPRGWVIFTVA LLLTLVEVIINTEWLIITLVRGGGQVSTPGNGSADWTVTSPCAIANMDFVMALIYVMLLLLAAF LGAWPTLCGRFKRWRKHGVFVLLTTATSIAIWVVWIVMYTYGNKQHHSPTWDDPTLAIALAANA WTFVFFYVIPEVSQVTKPSPEQSYQGDMYPTRGVGYETLLKEQTGPSMFVENKAFSMDEPASAK RPVSPYSGYNGQLLTSVYQPTEMALMHKGPSEGAYDVILPRATANSQVMGSANSTLRAEDMYMV QSHQVATPTKDGKISQDQSPKNKTRW hide sequence

RefSeq Acc Id:

XP_006247744 ⟸ XM_006247682

- Peptide Label:

isoform X2

- Sequence:

show sequence

MATHKTLLMCLGLPLFFPGALAQNHAPPGCSPDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTF
VLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAI
CFSCLIAHTLSLNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSTPGNGS
ADWTVTSPCAIANMDFVMALIYVMLLLLAAFLGAWPTLCGRFKRWRKHGVFVLLTTATSIAIWV
VWIVMYTYGNKQHHSPTWDDPTLAIALAANAWTFVFFYVIPEVSQVTKPSPEQSYQGDMYPTRG
VGYETLLKEQTGPSMFVENKAFSMDEPASAKRPVSPYSGYNGQLLTSVYQPTEMALMHKGPSEG
AYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQVATPTKDGKISQDQSPKNKTRW

hide sequence

RefSeq Acc Id:	XP_006247743 ⟸ XM_006247681
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6ATM9 (UniProtKB/TrEMBL), A0A8I5ZNK1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRAGAGWLRVPGTQLKPGLGARMATHKTLLMCLGLPLFFPGALAQNHAPPGCSPDLDPLYYNL CDRSGAWGIVLEAVAGAGIITTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFA CVVKPDFSTCASRRFLFGVLFAICFSCLIAHTLSLNFLARKNHGPRGWVIFTVALLLTLVEVII NTEWLIITLVRGGGQVSTPGNGSADWTVTSPCAIANMDFVMALIYVMLLLLAAFLGAWPTLCGR FKRWRKHGVFVLLTTATSIAIWVVWIVMYTYGNKQHHSPTWDDPTLAIALAANAWTFVFFYVIP EVSQVTKPSPEQSYQGDMYPTRGVGYETLLKEQTGPSMFVENKAFSMDEPASAKRPVSPYSGYN GQLLTSVYQPTEMALMHKGPSEGAYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQVATPTK DGKISQDQSPKNKTRW hide sequence

RefSeq Acc Id:	XP_006247747 ⟸ XM_006247685
- Peptide Label:	isoform X2
- UniProtKB:	Q3KRC4 (UniProtKB/Swiss-Prot), B6ID02 (UniProtKB/TrEMBL), A0A8I5ZNK1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATHKTLLMCLGLPLFFPGALAQNHAPPGCSPDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTF VLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAI CFSCLIAHTLSLNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSTPGNGS ADWTVTSPCAIANMDFVMALIYVMLLLLAAFLGAWPTLCGRFKRWRKHGVFVLLTTATSIAIWV VWIVMYTYGNKQHHSPTWDDPTLAIALAANAWTFVFFYVIPEVSQVTKPSPEQSYQGDMYPTRG VGYETLLKEQTGPSMFVENKAFSMDEPASAKRPVSPYSGYNGQLLTSVYQPTEMALMHKGPSEG AYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQVATPTKDGKISQDQSPKNKTRW hide sequence

RefSeq Acc Id:

XP_017452642 ⟸ XM_017597153

- Peptide Label:

isoform X2

- Sequence:

show sequence

MATHKTLLMCLGLPLFFPGALAQNHAPPGCSPDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTF
VLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAI
CFSCLIAHTLSLNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSTPGNGS
ADWTVTSPCAIANMDFVMALIYVMLLLLAAFLGAWPTLCGRFKRWRKHGVFVLLTTATSIAIWV
VWIVMYTYGNKQHHSPTWDDPTLAIALAANAWTFVFFYVIPEVSQVTKPSPEQSYQGDMYPTRG
VGYETLLKEQTGPSMFVENKAFSMDEPASAKRPVSPYSGYNGQLLTSVYQPTEMALMHKGPSEG
AYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQVATPTKDGKISQDQSPKNKTRW

hide sequence

Ensembl Acc Id:

ENSRNOP00000004256 ⟸ ENSRNOT00000004256

Ensembl Acc Id:

ENSRNOP00000074938 ⟸ ENSRNOT00000086924

Ensembl Acc Id:

ENSRNOP00000079729 ⟸ ENSRNOT00000109785

Ensembl Acc Id:

ENSRNOP00000095514 ⟸ ENSRNOT00000105225

Ensembl Acc Id:

ENSRNOP00000112496 ⟸ ENSRNOT00000132323

Ensembl Acc Id:

ENSRNOP00000100082 ⟸ ENSRNOT00000166620

Protein Domains

G-protein coupled receptors family 3 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3KRC4-F1-model_v2	AlphaFold	Q3KRC4	1-441	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697875

Promoter ID:

EPDNEW_R8400

Type:

initiation region

Name:

Gprc5c_1

Description:

G protein-coupled receptor, class C, group 5, member C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	103,396,092 - 103,396,152	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311408	AgrOrtholog
BioCyc Gene	G2FUF-22725	BioCyc
Ensembl Genes	ENSRNOG00000003144	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000004256	ENTREZGENE
	ENSRNOT00000086924	ENTREZGENE
	ENSRNOT00000105225	ENTREZGENE
	ENSRNOT00000132323	ENTREZGENE
IMAGE_CLONE	IMAGE:7932777	IMAGE-MGC_LOAD
InterPro	GPCR_3_C	UniProtKB/Swiss-Prot
	RA-inducible_GPCR3	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124696	IMAGE-MGC_LOAD
NCBI Gene	287805	ENTREZGENE
PANTHER	G PROTEIN COUPLED RECEPTOR, CLASS C, GROUP 5	UniProtKB/Swiss-Prot
	G-PROTEIN COUPLED RECEPTOR FAMILY C GROUP 5 MEMBER C	UniProtKB/Swiss-Prot
Pfam	7tm_3	UniProtKB/Swiss-Prot
PhenoGen	Gprc5c	PhenoGen
PROSITE	G_PROTEIN_RECEP_F3_4	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003144	RatGTEx
UniProt	A0A0G2K9B8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZNK1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATM9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LF20_RAT	UniProtKB/TrEMBL
	A0ABK0LN93_RAT	UniProtKB/TrEMBL
	B6ID02	ENTREZGENE, UniProtKB/TrEMBL
	F1LRW5	ENTREZGENE, UniProtKB/TrEMBL
	GPC5C_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-02-06	Gprc5c	G protein-coupled receptor, class C, group 5, member C	Gprc5c	G protein-coupled receptor, family C, group 5, member C	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Gprc5c	G protein-coupled receptor, family C, group 5, member C	Gprc5c_predicted	G protein-coupled receptor, family C, group 5, member C (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Gprc5c_predicted	G protein-coupled receptor, family C, group 5, member C (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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