Rsph3 (radial spoke head 3) - Rat Genome Database

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Gene: Rsph3 (radial spoke head 3) Rattus norvegicus
Analyze
Symbol: Rsph3
Name: radial spoke head 3
RGD ID: 1311306
Description: Predicted to be located in cytoplasm; cytoskeleton; and motile cilium. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 32. Orthologous to human RSPH3 (radial spoke head 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361476; radial spoke 3 homolog; radial spoke 3 homolog (Chlamydomonas); radial spoke head 3 homolog; radial spoke head protein 3 homolog; radial spokehead-like 2; Rshl2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,506,988 - 49,565,740 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl149,506,830 - 49,559,257 (-)EnsemblGRCr8
mRatBN7.2147,101,961 - 47,155,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,101,961 - 47,154,232 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx147,665,045 - 47,703,111 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,652,529 - 53,690,574 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,740,516 - 47,778,582 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,412,151 - 47,478,924 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,426,258 - 47,477,524 (-)Ensemblrn6Rnor6.0
Rnor_5.0148,729,556 - 48,780,832 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4141,313,530 - 41,336,537 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera142,782,009 - 42,842,838 (-)NCBICelera
RGSC_v3.1141,316,470 - 41,370,068 (-)NCBI
Cytogenetic Map1q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:27120127  


Genomics

Comparative Map Data
Rsph3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,506,988 - 49,565,740 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl149,506,830 - 49,559,257 (-)EnsemblGRCr8
mRatBN7.2147,101,961 - 47,155,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,101,961 - 47,154,232 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx147,665,045 - 47,703,111 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,652,529 - 53,690,574 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,740,516 - 47,778,582 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,412,151 - 47,478,924 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,426,258 - 47,477,524 (-)Ensemblrn6Rnor6.0
Rnor_5.0148,729,556 - 48,780,832 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4141,313,530 - 41,336,537 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera142,782,009 - 42,842,838 (-)NCBICelera
RGSC_v3.1141,316,470 - 41,370,068 (-)NCBI
Cytogenetic Map1q11NCBI
RSPH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,962,980 - 159,000,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,970,084 - 159,000,202 (-)Ensemblhg38GRCh38
GRCh376159,393,903 - 159,421,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366159,318,254 - 159,341,186 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346159,368,676 - 159,391,607NCBI
Celera6160,046,571 - 160,069,312 (-)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,868,976 - 156,891,903 (-)NCBIHuRef
CHM1_16159,660,720 - 159,683,640 (-)NCBICHM1_1
T2T-CHM13v2.06160,212,959 - 160,245,813 (-)NCBIT2T-CHM13v2.0
Rsph3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,164,446 - 8,198,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl178,164,446 - 8,198,656 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38177,945,614 - 7,979,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl177,945,614 - 7,979,824 (+)Ensemblmm10GRCm38
MGSCv37178,138,479 - 8,172,421 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36177,784,157 - 7,817,660 (+)NCBIMGSCv36mm8
Celera177,474,283 - 7,474,984 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map174.82NCBI
Rsph3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554393,509,395 - 3,534,392 (+)Ensembl
ChiLan1.0NW_0049554393,510,076 - 3,533,924 (+)NCBIChiLan1.0ChiLan1.0
RSPH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,993,081 - 179,105,295 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16176,898,056 - 177,010,374 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06156,861,740 - 156,889,821 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16161,875,729 - 161,904,276 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6161,880,465 - 161,904,315 (-)EnsemblpanPan2panpan1.1
RSPH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1148,329,171 - 48,349,924 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,329,211 - 48,349,088 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha149,171,625 - 49,192,001 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0148,513,493 - 48,534,673 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl148,513,534 - 48,534,213 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1148,389,455 - 48,409,743 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0148,260,340 - 48,280,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,819,818 - 48,840,110 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rsph3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,313,711 - 143,341,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648910,569,541 - 10,593,100 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648910,568,736 - 10,592,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,244,040 - 8,265,659 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.118,243,177 - 8,265,816 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,141,811 - 10,149,319 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RSPH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11386,562,453 - 86,582,483 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604058,957,000 - 58,976,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rsph3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624929661,495 - 682,072 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624929661,257 - 682,772 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rsph3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12192,232,601 - 192,287,594 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rsph3
426 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:101
Interacting mature miRNAs:107
Transcripts:ENSRNOT00000025554, ENSRNOT00000067916
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 91 59 6 355 191 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003748694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC169129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067916   ⟹   ENSRNOP00000063027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl149,506,830 - 49,559,257 (-)Ensembl
mRatBN7.2 Ensembl147,101,961 - 47,154,232 (-)Ensembl
Rnor_6.0 Ensembl147,426,258 - 47,477,524 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000160516   ⟹   ENSRNOP00000103404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl149,521,390 - 49,559,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167304   ⟹   ENSRNOP00000098879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl149,517,648 - 49,559,257 (-)Ensembl
RefSeq Acc Id: NM_001108463   ⟹   NP_001101933
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,521,195 - 49,559,257 (-)NCBI
mRatBN7.2147,116,168 - 47,154,232 (-)NCBI
RefSeq Acc Id: XM_006227909   ⟹   XP_006227971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,506,988 - 49,565,740 (-)NCBI
mRatBN7.2147,102,002 - 47,155,201 (-)NCBI
Rnor_6.0147,426,314 - 47,478,923 (-)NCBI
Rnor_5.0148,729,556 - 48,780,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006227910   ⟹   XP_006227972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,506,988 - 49,565,740 (-)NCBI
mRatBN7.2147,101,961 - 47,155,201 (-)NCBI
Rnor_6.0147,426,244 - 47,478,923 (-)NCBI
Rnor_5.0148,729,556 - 48,780,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758741   ⟹   XP_008756963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,516,052 - 49,565,740 (-)NCBI
mRatBN7.2147,111,932 - 47,155,201 (-)NCBI
Rnor_6.0147,436,722 - 47,478,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081295   ⟹   XP_038937223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,521,185 - 49,551,897 (-)NCBI
mRatBN7.2147,116,156 - 47,153,535 (-)NCBI
RefSeq Acc Id: XM_039081299   ⟹   XP_038937227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,521,185 - 49,558,645 (-)NCBI
mRatBN7.2147,116,156 - 47,153,611 (-)NCBI
RefSeq Acc Id: XM_063266140   ⟹   XP_063122210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,529,903 - 49,551,897 (-)NCBI
RefSeq Acc Id: XP_006227972   ⟸   XM_006227910
- Peptide Label: isoform X2
- UniProtKB: F1LRY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227971   ⟸   XM_006227909
- Peptide Label: isoform X1
- UniProtKB: F1LRY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008756963   ⟸   XM_008758741
- Peptide Label: isoform X1
- UniProtKB: F1LRY1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063027   ⟸   ENSRNOT00000067916
RefSeq Acc Id: XP_038937227   ⟸   XM_039081299
- Peptide Label: isoform X4
- UniProtKB: B5DFN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937223   ⟸   XM_039081295
- Peptide Label: isoform X4
- UniProtKB: B5DFN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001101933   ⟸   NM_001108463
- UniProtKB: F1LRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122210   ⟸   XM_063266140
- Peptide Label: isoform X3
- UniProtKB: A6JKU3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103404   ⟸   ENSRNOT00000160516
Ensembl Acc Id: ENSRNOP00000098879   ⟸   ENSRNOT00000167304
Protein Domains
Reverse transcriptase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LRY1-F1-model_v2 AlphaFold F1LRY1 1-534 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311306 AgrOrtholog
BioCyc Gene G2FUF-61609 BioCyc
Ensembl Genes ENSRNOG00000018762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067916 ENTREZGENE
  ENSRNOT00000067916.5 UniProtKB/TrEMBL
  ENSRNOT00000160516 ENTREZGENE
  ENSRNOT00000160516.1 UniProtKB/TrEMBL
  ENSRNOT00000167304.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.270 UniProtKB/TrEMBL
InterPro DNA/RNA_pol_sf UniProtKB/TrEMBL
  Radial_spoke_3 UniProtKB/TrEMBL
  Rev_trsase/Diguanyl_cyclase UniProtKB/TrEMBL
  RT_dom UniProtKB/TrEMBL
NCBI Gene 361476 ENTREZGENE
PANTHER PTHR21648 UniProtKB/TrEMBL
  RADIAL SPOKE HEAD PROTEIN 3 HOMOLOG UniProtKB/TrEMBL
  REVERSE TRANSCRIPTASES UniProtKB/TrEMBL
Pfam Radial_spoke_3 UniProtKB/TrEMBL
  RVT_1 UniProtKB/TrEMBL
PhenoGen Rsph3 PhenoGen
PROSITE RT_POL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018762 RatGTEx
Superfamily-SCOP DNA/RNA polymerases UniProtKB/TrEMBL
UniProt A0ABK0L2Z4_RAT UniProtKB/TrEMBL
  A0ABK0LDU6_RAT UniProtKB/TrEMBL
  A6JKU3 ENTREZGENE, UniProtKB/TrEMBL
  B5DFN5 ENTREZGENE, UniProtKB/TrEMBL
  F1LRY1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 Rsph3  radial spoke head 3  Rsph3  radial spoke head 3 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-05-24 Rsph3  radial spoke head 3 homolog  Rsph3  radial spoke 3 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-13 Rsph3  radial spoke 3 homolog  Rsph3  radial spoke 3 homolog (Chlamydomonas)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-02-02 Rsph3  radial spoke 3 homolog (Chlamydomonas)  Rshl2  radial spokehead-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rshl2  radial spokehead-like 2   Rshl2_predicted  radial spokehead-like 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rshl2_predicted  radial spokehead-like 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED