Nvl (nuclear VCP-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nvl (nuclear VCP-like) Rattus norvegicus
Analyze
Symbol: Nvl
Name: nuclear VCP-like
RGD ID: 1311270
Description: Predicted to enable ATP binding activity; ATP hydrolysis activity; and preribosome binding activity. Predicted to be involved in regulation of protein localization to nucleolus; ribosome biogenesis; and telomerase holoenzyme complex assembly. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of nuclear exosome (RNase complex) and telomerase holoenzyme complex. Predicted to be active in nucleus. Orthologous to human NVL (nuclear VCP like); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC289323; nuclear valosin-containing protein-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,385,389 - 95,438,490 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1395,372,641 - 95,442,291 (-)EnsemblGRCr8
mRatBN7.21392,851,023 - 92,906,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,853,650 - 92,906,049 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1395,358,969 - 95,411,370 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,758,872 - 96,811,272 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,934,464 - 93,986,919 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,410,026 - 99,468,783 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,410,026 - 99,468,778 (-)Ensemblrn6Rnor6.0
Rnor_5.013104,407,045 - 104,465,204 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41396,862,759 - 96,917,215 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1392,394,917 - 92,447,334 (-)NCBICelera
RGSC_v3.11397,051,898 - 97,105,918 (-)NCBI
Cytogenetic Map13q26NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15469983   PMID:16782053   PMID:19946888   PMID:22226966   PMID:22658674   PMID:26166824   PMID:26456651   PMID:29107693  


Genomics

Comparative Map Data
Nvl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,385,389 - 95,438,490 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1395,372,641 - 95,442,291 (-)EnsemblGRCr8
mRatBN7.21392,851,023 - 92,906,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,853,650 - 92,906,049 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1395,358,969 - 95,411,370 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,758,872 - 96,811,272 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,934,464 - 93,986,919 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,410,026 - 99,468,783 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,410,026 - 99,468,778 (-)Ensemblrn6Rnor6.0
Rnor_5.013104,407,045 - 104,465,204 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41396,862,759 - 96,917,215 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1392,394,917 - 92,447,334 (-)NCBICelera
RGSC_v3.11397,051,898 - 97,105,918 (-)NCBI
Cytogenetic Map13q26NCBI
NVL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,227,345 - 224,330,172 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,227,334 - 224,330,189 (-)Ensemblhg38GRCh38
GRCh371224,415,047 - 224,517,874 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361222,481,659 - 222,584,495 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341220,721,771 - 220,824,607NCBI
Celera1197,605,972 - 197,708,808 (-)NCBICelera
Cytogenetic Map1q42.11NCBI
HuRef1194,934,993 - 195,038,171 (-)NCBIHuRef
CHM1_11225,687,528 - 225,790,385 (-)NCBICHM1_1
T2T-CHM13v2.01223,416,266 - 223,519,053 (-)NCBIT2T-CHM13v2.0
Nvl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,914,703 - 180,974,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,914,703 - 180,971,769 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381181,087,138 - 181,144,214 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1181,087,138 - 181,144,204 (-)Ensemblmm10GRCm38
MGSCv371183,023,554 - 183,074,288 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361182,930,098 - 182,980,832 (-)NCBIMGSCv36mm8
Celera1188,160,290 - 188,211,164 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.53NCBI
Nvl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555201,011,621 - 1,062,286 (+)Ensembl
ChiLan1.0NW_0049555201,010,966 - 1,069,176 (+)NCBIChiLan1.0ChiLan1.0
NVL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2125,198,255 - 25,300,948 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1125,149,198 - 25,251,886 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01199,695,388 - 199,798,080 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11204,704,095 - 204,807,027 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1204,704,371 - 204,806,959 (-)EnsemblpanPan2panpan1.1
NVL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1740,041,692 - 40,131,984 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl740,041,394 - 40,131,823 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha739,523,642 - 39,614,138 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0739,876,221 - 39,966,969 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl739,876,247 - 39,966,968 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1739,717,305 - 39,807,555 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0739,724,584 - 39,815,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0739,993,455 - 40,083,964 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nvl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934453,365,252 - 53,472,551 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365261,272,389 - 1,382,048 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365261,274,760 - 1,381,997 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NVL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1012,588,135 - 12,670,625 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11012,564,891 - 12,670,641 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NVL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,455,812 - 5,555,666 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,455,646 - 5,556,770 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660555,633,241 - 5,737,550 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nvl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248355,913,699 - 5,970,503 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248355,896,014 - 5,977,581 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nvl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11059,454,114 - 59,505,430 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nvl
325 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:200
Count of miRNA genes:147
Interacting mature miRNAs:158
Transcripts:ENSRNOT00000004927
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
BE106505  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,856,117 - 92,856,270 (+)MAPPERmRatBN7.2
Rnor_6.01399,421,865 - 99,422,017NCBIRnor6.0
Rnor_6.01399,412,494 - 99,412,646NCBIRnor6.0
Rnor_5.013104,417,555 - 104,417,707UniSTSRnor5.0
Rnor_5.013104,409,513 - 104,409,665UniSTSRnor5.0
RGSC_v3.41396,865,227 - 96,865,379UniSTSRGSC3.4
Celera1392,397,385 - 92,397,537UniSTS
RH 3.4 Map13631.1UniSTS
Cytogenetic Map13q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004927   ⟹   ENSRNOP00000004927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1395,385,389 - 95,442,291 (-)Ensembl
mRatBN7.2 Ensembl1392,853,650 - 92,906,049 (-)Ensembl
Rnor_6.0 Ensembl1399,410,026 - 99,468,778 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086888   ⟹   ENSRNOP00000070402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1395,372,641 - 95,437,788 (-)Ensembl
mRatBN7.2 Ensembl1392,854,943 - 92,904,215 (-)Ensembl
Rnor_6.0 Ensembl1399,414,193 - 99,468,775 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000145197   ⟹   ENSRNOP00000110278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1395,387,423 - 95,437,788 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000163056   ⟹   ENSRNOP00000110509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1395,372,641 - 95,437,788 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170451   ⟹   ENSRNOP00000098840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1395,373,196 - 95,437,788 (-)Ensembl
RefSeq Acc Id: NM_001105980   ⟹   NP_001099450
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,385,389 - 95,437,788 (-)NCBI
mRatBN7.21392,853,650 - 92,906,049 (-)NCBI
Rnor_6.01399,410,026 - 99,468,778 (-)NCBI
Rnor_5.013104,407,045 - 104,465,204 (-)NCBI
RGSC_v3.41396,862,759 - 96,917,215 (-)RGD
Celera1392,394,917 - 92,447,334 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250367   ⟹   XP_006250429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,385,397 - 95,438,486 (-)NCBI
mRatBN7.21392,851,023 - 92,906,747 (-)NCBI
Rnor_6.01399,410,034 - 99,468,783 (-)NCBI
Rnor_5.013104,407,045 - 104,465,204 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250370   ⟹   XP_006250432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,385,397 - 95,437,689 (-)NCBI
mRatBN7.21392,851,023 - 92,905,932 (-)NCBI
Rnor_6.01399,410,034 - 99,459,448 (-)NCBI
Rnor_5.013104,407,045 - 104,465,204 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250372   ⟹   XP_006250434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,385,397 - 95,437,688 (-)NCBI
mRatBN7.21392,851,023 - 92,905,931 (-)NCBI
Rnor_6.01399,410,034 - 99,461,895 (-)NCBI
Rnor_5.013104,407,045 - 104,465,204 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598728   ⟹   XP_017454217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,385,397 - 95,437,689 (-)NCBI
mRatBN7.21392,851,023 - 92,905,932 (-)NCBI
Rnor_6.01399,410,034 - 99,466,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090562   ⟹   XP_038946490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,385,397 - 95,437,688 (-)NCBI
mRatBN7.21392,851,023 - 92,896,718 (-)NCBI
RefSeq Acc Id: XM_063272169   ⟹   XP_063128239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,385,397 - 95,438,484 (-)NCBI
RefSeq Acc Id: XM_063272170   ⟹   XP_063128240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,408,533 - 95,438,490 (-)NCBI
RefSeq Acc Id: NP_001099450   ⟸   NM_001105980
- UniProtKB: D3ZTY9 (UniProtKB/TrEMBL),   A6JGJ3 (UniProtKB/TrEMBL),   A0A0G2JXU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250429   ⟸   XM_006250367
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250434   ⟸   XM_006250372
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JXU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250432   ⟸   XM_006250370
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JXU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454217   ⟸   XM_017598728
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JXU1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004927   ⟸   ENSRNOT00000004927
Ensembl Acc Id: ENSRNOP00000070402   ⟸   ENSRNOT00000086888
RefSeq Acc Id: XP_038946490   ⟸   XM_039090562
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JXU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128239   ⟸   XM_063272169
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JXU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128240   ⟸   XM_063272170
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000110509   ⟸   ENSRNOT00000163056
Ensembl Acc Id: ENSRNOP00000110278   ⟸   ENSRNOT00000145197
Ensembl Acc Id: ENSRNOP00000098840   ⟸   ENSRNOT00000170451
Protein Domains
AAA+ ATPase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTY9-F1-model_v2 AlphaFold D3ZTY9 1-855 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699071
Promoter ID:EPDNEW_R9592
Type:initiation region
Name:Nvl_1
Description:nuclear VCP-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01399,468,741 - 99,468,801EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311270 AgrOrtholog
BioCyc Gene G2FUF-17099 BioCyc
Ensembl Genes ENSRNOG00000003629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004927 ENTREZGENE
  ENSRNOT00000004927.8 UniProtKB/TrEMBL
  ENSRNOT00000086888.3 UniProtKB/TrEMBL
  ENSRNOT00000145197.1 UniProtKB/TrEMBL
  ENSRNOT00000163056.1 UniProtKB/TrEMBL
  ENSRNOT00000170451.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2010 UniProtKB/TrEMBL
  1.10.8.60 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA_ATPase_domain UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATPase_AAA+_core UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  NLV2_N_sf UniProtKB/TrEMBL
  NVL2_nucleolin-bd UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:289323 UniProtKB/TrEMBL
NCBI Gene 289323 ENTREZGENE
PANTHER AAA-FAMILY ATPASE UniProtKB/TrEMBL
  NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  Nucleolin_bd UniProtKB/TrEMBL
PhenoGen Nvl PhenoGen
PROSITE AAA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003629 RatGTEx
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JXU1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L8T9_RAT UniProtKB/TrEMBL
  A0ABK0LVZ7_RAT UniProtKB/TrEMBL
  A0ABK0M5D0_RAT UniProtKB/TrEMBL
  A6JGJ3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTY9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nvl  nuclear VCP-like   Nvl_predicted  nuclear VCP-like (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nvl_predicted  nuclear VCP-like (predicted)      Symbol and Name status set to approved 70820 APPROVED