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Gene: Ttc39a (tetratricopeptide repeat domain 39A) Rattus norvegicus

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Symbol:

Ttc39a

Name:

tetratricopeptide repeat domain 39A

RGD ID:

1311126

Description:

Orthologous to human TTC39A (tetratricopeptide repeat domain 39A); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC108348114; LOC298366; RGD1311126; similar to RIKEN cDNA 4922503N01; tetratricopeptide repeat protein 39A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TTC39A (tetratricopeptide repeat domain 39A)	RGD	RGD
Mus musculus (house mouse):	Ttc39a (tetratricopeptide repeat domain 39A)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Ttc39a (tetratricopeptide repeat domain 39A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TTC39A (tetratricopeptide repeat domain 39A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TTC39A (tetratricopeptide repeat domain 39A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ttc39a (tetratricopeptide repeat domain 39A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TTC39A (tetratricopeptide repeat domain 39A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TTC39A (tetratricopeptide repeat domain 39A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ttc39a (tetratricopeptide repeat domain 39A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ttc39a (tetratricopeptide repeat domain 39A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TTC39A (tetratricopeptide repeat domain 39A)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ttc39a (tetratricopeptide repeat domain 39A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:158403	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	ttc39a (tetratricopeptide repeat domain 39A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	IML2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C32D5.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YKR018C	Alliance	DIOPT (InParanoid\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ttc39a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	129,379,560 - 129,441,779 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	129,380,753 - 129,433,372 (+)	Ensembl				GRCr8
mRatBN7.2	5	124,165,102 - 124,204,740 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	124,151,760 - 124,204,973 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	126,781,574 - 126,820,877 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	128,504,632 - 128,543,934 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	128,555,920 - 128,595,222 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	129,024,505 - 129,083,226 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	129,249,506 - 129,288,805 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	5	129,043,675 - 129,082,442 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	133,083,934 - 133,123,236 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	130,761,328 - 130,800,627 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	122,893,746 - 122,932,803 (+)	NCBI		Celera
RGSC_v3.1	5	130,766,551 - 130,805,365 (+)	NCBI
Cytogenetic Map	5	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Liver Neoplasms (ISO)

Wolff-Parkinson-White syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-benzofuran (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

butanal (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

chromium(6+) (ISO)

clofibrate (ISO)

coumarin (EXP)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

furan (EXP,ISO)

indole-3-methanol (EXP)

ketoconazole (ISO)

methamphetamine (ISO)

methoxychlor (EXP)

naphthalene-1,5-diamine (ISO)

nickel atom (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sulforaphane (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

trametinib (ISO)

tremolite asbestos (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

centrosome (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Ttc39a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	129,379,560 - 129,441,779 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	129,380,753 - 129,433,372 (+)	Ensembl				GRCr8
mRatBN7.2	5	124,165,102 - 124,204,740 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	124,151,760 - 124,204,973 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	126,781,574 - 126,820,877 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	128,504,632 - 128,543,934 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	128,555,920 - 128,595,222 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	129,024,505 - 129,083,226 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	129,249,506 - 129,288,805 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	5	129,043,675 - 129,082,442 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	133,083,934 - 133,123,236 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	130,761,328 - 130,800,627 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	122,893,746 - 122,932,803 (+)	NCBI		Celera
RGSC_v3.1	5	130,766,551 - 130,805,365 (+)	NCBI
Cytogenetic Map	5	q35	NCBI

TTC39A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	51,287,258 - 51,345,116 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	51,287,258 - 51,345,116 (-)	Ensembl			hg38	GRCh38
GRCh37	1	51,752,930 - 51,810,788 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	51,525,370 - 51,560,526 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	51,474,923 - 51,509,020	NCBI
Celera	1	50,039,459 - 50,097,314 (-)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	49,870,866 - 49,928,386 (-)	NCBI		HuRef
CHM1_1	1	51,870,379 - 51,928,229 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	51,167,163 - 51,225,015 (-)	NCBI		T2T-CHM13v2.0

Ttc39a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	109,251,344 - 109,301,942 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	109,263,820 - 109,301,942 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	109,394,147 - 109,444,749 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	109,406,623 - 109,444,745 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	109,079,705 - 109,117,350 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	108,905,029 - 108,942,677 (+)	NCBI		MGSCv36	mm8
Celera	4	107,747,325 - 107,784,942 (+)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	51.29	NCBI

Ttc39a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	7,709,362 - 7,736,484 (+)	Ensembl
ChiLan1.0	NW_004955464	7,709,669 - 7,736,484 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC39A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	175,522,000 - 175,579,906 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	174,662,551 - 174,720,458 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	50,531,607 - 50,589,515 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	52,030,470 - 52,087,870 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	52,030,470 - 52,074,328 (-)	Ensembl			panPan2	panpan1.1

TTC39A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	9,931,352 - 9,954,508 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	9,904,278 - 9,949,928 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	10,064,809 - 10,105,848 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	10,038,325 - 10,079,415 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	10,029,265 - 10,077,513 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	9,850,027 - 9,891,057 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	9,939,154 - 9,980,189 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	9,955,597 - 9,996,655 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ttc39a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	65,867,976 - 65,918,019 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	9,510,602 - 9,549,364 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	9,510,630 - 9,549,364 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC39A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	160,806,629 - 160,854,489 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	160,806,634 - 160,854,498 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	148,613,656 - 148,634,120 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC39A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	81,608,949 - 81,668,469 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	81,625,002 - 81,668,728 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,614,293 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc39a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624859	1,769,767 - 1,804,025 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624859	1,760,693 - 1,804,025 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ttc39a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	45,416,169 - 45,454,205 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ttc39a
544 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	646
Count of miRNA genes:	247
Interacting mature miRNAs:	295
Transcripts:	ENSRNOT00000013459, ENSRNOT00000057729, ENSRNOT00000072396, ENSRNOT00000072692
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	84630798	129630798	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1582230	Bw78	Body weight QTL 78	3.2	0.0016	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	124314582	133270832	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	84630798	129630798	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	92583776	137583776	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84630798	129630798	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	94034903	139034903	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	95062526	133270832	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	89369373	134369373	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	97492524	133270832	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	92881678	137881678	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	95062526	133270832	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
18	12	76	176	50	53	34	150	34	415	256	22	166	99	106	19	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001415826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013459 ⟹ ENSRNOP00000013459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	129,380,753 - 129,433,372 (+)	Ensembl
mRatBN7.2 Ensembl	5	124,151,760 - 124,204,205 (+)	Ensembl
Rnor_6.0 Ensembl	5	129,052,043 - 129,082,208 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000057729 ⟹ ENSRNOP00000054540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	129,402,290 - 129,432,839 (+)	Ensembl
mRatBN7.2 Ensembl	5	124,173,725 - 124,204,205 (+)	Ensembl
Rnor_6.0 Ensembl	5	129,043,675 - 129,082,442 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000072396 ⟹ ENSRNOP00000067106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	129,401,465 - 129,432,763 (+)	Ensembl
mRatBN7.2 Ensembl	5	124,158,757 - 124,204,205 (+)	Ensembl
Rnor_6.0 Ensembl	5	129,257,429 - 129,287,984 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000072692 ⟹ ENSRNOP00000063929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	129,393,453 - 129,433,372 (+)	Ensembl
mRatBN7.2 Ensembl	5	124,165,671 - 124,204,973 (+)	Ensembl
Rnor_6.0 Ensembl	5	129,249,506 - 129,288,805 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128949 ⟹ ENSRNOP00000099685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	129,387,230 - 129,433,372 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144812 ⟹ ENSRNOP00000101187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	129,394,294 - 129,433,044 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159369 ⟹ ENSRNOP00000103264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	129,401,988 - 129,433,372 (+)	Ensembl

RefSeq Acc Id:

NM_001415826 ⟹ NP_001402755

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,394,294 - 129,433,117 (+)	NCBI
mRatBN7.2	5	124,165,659 - 124,204,484 (+)	NCBI

RefSeq Acc Id:

XM_006238582 ⟹ XP_006238644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,401,268 - 129,441,779 (+)	NCBI
mRatBN7.2	5	124,172,930 - 124,204,740 (+)	NCBI
Rnor_6.0	5	129,051,545 - 129,082,849 (+)	NCBI

Sequence:

show sequence

AGTTCCAGGGTAGCCAGGGATACCCTGTCTCAAAAGACTAAACAAAACAACGCCAACCCTCATG
CGATGTGGCCCCTGGAGAAGAGGCATCTTCCAAAGGGAAAGTTGAGAGCCAGGAAAGTCCGAGC
CTATGCTTCGTTTATTCATTTACTCACTCATGTATCGGTTAGGACCTTGCTTTGTGCCCTGAAG
TGACAGAAGCAAGATTCCTGTTTGTATTTTAGTGAAAGGAGACAGACCATAGTCCAAATACATA
GGTAGGGATGCTAAGAGCTGCCGAGGAACTTGAGAACCAGAAGAGGGCCAGGTATGCAGGAGAT
GTCATCAAGAGGGTGACTTGTGTCTGGAAGGTTCTGGAATGCTCATACCAGACCATGGCCCATT
GTGACAGTGTCTGTTCTAGAGTATAGGCCTGAGGTCAACAAGAACTTGGAGAAGAAATACCCAG
AGAGGAACAAAGTGGTTGAGCAGTGTCCCTAAGTGGGACAGCAAATCCCAATGGGTCAGAAGGG
TCACAAGGACTCCCTTTACGATTGTGAAGGGTCTCCGGTGAGCAGCCTCCATGAGGCCCTGGAC
CAGTGCATGACAGCCCTGGACCTCTTCCTTACCAACCAGTTCTCAGAAGCACTCAGCTACCTCA
AACCCAGAACCAAGGAGAGCATGTATCACTCCCTGACGTATGCCACCATCCTGGAGATGCAGGC
CATGATGACCTTCGACCCCCAGGACATCCTGCTTGCTGGCAACATGATGAAGGAGGCGCAGTCG
CTGTGTCAGAGGCACCGAAGGAAGTCCTCTGTGACAGACTCGTTCAGCAGCCTGGTGCACCGTC
CCACCATTGACCAGTTCACAGAAGAGGAGATCCACGCAGAGGTCTGTTATGCAGAATGCCTACT
GCAGAGAGCAGCCCTGACCTTCCTGCAGGACGAGAACATGGTGAGCTTCATCAAGGGTGGCATC
AAAGTTCGGAACAGCTACCAGACTTACAAGGAACTAGACAGCCTCGTCCAGTCCTCACAATACT
CGAAGGGTGAGAGCCACAGACACTTCGAAGGAGGGGTGAAGCTCGGTGTAGGGGCCTTCAACCT
GACGCTGTCCATGCTTCCCACTAGGATTCTGAGGCTACTGGAGTTTGTCGGGTTTTCAGGAAAC
AAGGACTACGGGCTGCTGCAGCTGGAGGAGGGCGCGACCGGGCACAGCTTCCGCGCAGTGCTGT
GCGTCATGCTGTTGCTGTGTTATCACACCTTCCTCACCTTCGTGCTCGGTACTGGGAATGTCAA
CATCGAGGAGGCAGAGAAGCTGCTGAAGCCCTACCTGAACCGATACCCCAAGGGCGCCATCTTC
CTGTTCTTTGCTGGGCGGATTGAAGCTATCAAAGGAAATATTGATGCTGCTGTCCGGCGGTTTG
AAGAGTGCTGTGAGGCTCAGCAGCACTGGAAGCAGTTTCACCACATGTGCTACTGGGAGCTGAT
GTGGTGCTTTACCTACAAGGGTCAGTGGAAAATGGCCTACTTCTATGCCGACCTGCTGAGCAAG
GAGAACTCCTGGTCCAAGGCCACCTATATCTACATGAAGGCTGCCTACCTCAGCATGTTTGGGA
AGGAAGACTACAAGCCATTCGGGGACGATGAAGTGGAGTTGTTCAGGGCTGTGCCAGGCTTGAA
GCTCAAGATTGCTGGGAAATCTCTACCCACAGAGAAGTTTGCTATCCGGAAGTCCAGGCGCTAC
CTCTCCCCCAACCCCATCTCCTTGCCAATCCCTGCTCTGGAGATGATGTACATCTGGAACGGCT
ATGCTGTGATTGGGAAGCAGCAGAAGCTCACTGATGGGATGCTGGCAGTCATCACCAAAGCTGA
AGAGATGCTGGCCATGGGCCCAGAGAATGAGTACTCAGCAGATGACGACTGCCTGGTCAAATTG
CTGAAAGGCCTATGTCTGAAATACCTGGGCCGAATCCAAGAGGCAGAGGAGAATTTCAGGAGCA
TTTCTGCAAATGAAAAGAAAATTAAATATGACCATTACTTGATTCCAAATGCTCTACTGGAGCT
GGCCCTGCTATTTATGGAGCAAGGCAGAAATGAAGAGGCCATCAAACTCCTAGACTCTGCAAAG
CAAAACTACAAGAACTACTCCATGGAGTCAAGGACACATTTTCGGATCCAGGCAGCCACACTGC
AGGCCAGATCTTCCCTAGGAGACGGCAGCAGATCCCCAGTCTCATCAGTGTCCCTGTAGCTTTC
TGCAGCACTCTTGGGCTGGACAGAGCTCCTGGAAACATTTCAAAAGATCACCTCCCCTACCCTG
CCCTTCCTTGGGGTCCACCTGGTGCTCCAGTGGGATTGCACAAGAATGTCTGTGCAGAAGCAAA
GACAGCCTTTTTACCAGTGTGGCCAAAGCCTTCACACATACGGGTACCTGTTTTACACTGTGAT
GTTTAAGAGAATGTATGAACAGTTTACATTTCTTTAGAATACATTGATGGGATTATAGTTGGTG
TTTAAAAAAAACCTACCCCCCCAAAACAAACAAAACCCTCTAACTGCCTGTTAATCTGTTTACT
TCCTGATCTGGAAGTAATTTCCCTACTTGTTATCCAAGGCCAAACTGCTTTTCAAACCTCAGCT
TTTGAGGATAGGAGTTCCTAGCATCTGAGACTTTGGCTTCAAAGTTCTACATTGCAAATTCCAG
GACAGCCAGAACTACACAATGAGACACTGGGTCTAAAAAAAATAAAACAAAACAAAACAAGTTG
CTAACATTTAAAATTTGAGTTTTCATATAAATTTGTCTTCTAATTGAAAAAAAAAAAAGGCATG
AGAATCAGAAGCTCAAGGCCAGTCTTGGAGTCTGAAGCCAGATGAGGTGCTTAATTGAAA

hide sequence

RefSeq Acc Id:

XM_008763953 ⟹ XP_008762175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,393,782 - 129,441,779 (+)	NCBI
mRatBN7.2	5	124,165,102 - 124,204,740 (+)	NCBI
Rnor_6.0	5	129,042,499 - 129,082,849 (+)	NCBI

Sequence:

show sequence

CATAATGTCTGTAACTCCAGCTCCAGGGGATCTGACACCTTCACACTGGTGTAGCTGCAGGCAA
AACTCTAATACACACACACACACAAAATTTTTTTAAAAGAAGAACAACAAACAACTCACAGCCT
TTCCGGGCAGCCTATCTTGATGTAAGCAGCAATCCCCCAGACATTTTTCCCTATTCCTAAATTC
AACTTGCCTGGCTCTTCTGGGATCTGGTCCAAGTACTTCCCACCATGGCTGCATTTTCAGGCTG
CTCTCTCTTGCTTCCTCTTCTGACATCCTGGAGCTCAGGGCCAATCCCTCCTCCTGTCCCTTGC
CTTTCTAAAGGGACAGCTCTAATCTAATGGCAGCCACGTGTTATGATGAGTCACGGGAGCATCT
GGGCCCAGAGGTAGTGGCCAGTTAACTCTTAATGGGCCAGGGCTCTCTGCTAAAAGATCATGAG
GGCTTCTTCGGAACCTGCCTCGGATCTAAGTGCAAAGTGGGCCTCTGGGGATGGACCACTCACT
CTGAGAGTGAGAGAGGAGGAGGGCAGAGGGAGAAGGGACTGGGTGTGAGCTTTGGAGTTCCTAA
GTTGCAGTTCCTGCTTGCCACTTATTGGAGTGGCTCTACACAGGTCACATGGACTCAACCGCTC
TGAGTTTTTGCATCTGGAAAAAGGCAATTTTAGGGATGGTTTGAGAAGACCTGCTAGCGGGGCG
TGCTAACCCGCATGATTTCCACCTTCTGGTCTCCTGCAAAACACTGGCCCAGTTGGACAAGTGG
TTAGAATGAATGTCCACATCTGTCTACAGAAACTACGCTTTCTCTGCTAAGATGGCTCGGCAGT
GTGGCTGGACCGTGAGAGCTCAGGTCTCCGGTGAGCAGCCTCCATGAGGCCCTGGACCAGTGCA
TGACAGCCCTGGACCTCTTCCTTACCAACCAGTTCTCAGAAGCACTCAGCTACCTCAAACCCAG
AACCAAGGAGAGCATGTATCACTCCCTGACGTATGCCACCATCCTGGAGATGCAGGCCATGATG
ACCTTCGACCCCCAGGACATCCTGCTTGCTGGCAACATGATGAAGGAGGCGCAGTCGCTGTGTC
AGAGGCACCGAAGGAAGTCCTCTGTGACAGACTCGTTCAGCAGCCTGGTGCACCGTCCCACCAT
TGACCAGTTCACAGAAGAGGAGATCCACGCAGAGGTCTGTTATGCAGAATGCCTACTGCAGAGA
GCAGCCCTGACCTTCCTGCAGGACGAGAACATGGTGAGCTTCATCAAGGGTGGCATCAAAGTTC
GGAACAGCTACCAGACTTACAAGGAACTAGACAGCCTCGTCCAGTCCTCACAATACTCGAAGGG
TGAGAGCCACAGACACTTCGAAGGAGGGGTGAAGCTCGGTGTAGGGGCCTTCAACCTGACGCTG
TCCATGCTTCCCACTAGGATTCTGAGGCTACTGGAGTTTGTCGGGTTTTCAGGAAACAAGGACT
ACGGGCTGCTGCAGCTGGAGGAGGGCGCGACCGGGCACAGCTTCCGCGCAGTGCTGTGCGTCAT
GCTGTTGCTGTGTTATCACACCTTCCTCACCTTCGTGCTCGGTACTGGGAATGTCAACATCGAG
GAGGCAGAGAAGCTGCTGAAGCCCTACCTGAACCGATACCCCAAGGGCGCCATCTTCCTGTTCT
TTGCTGGGCGGATTGAAGCTATCAAAGGAAATATTGATGCTGCTGTCCGGCGGTTTGAAGAGTG
CTGTGAGGCTCAGCAGCACTGGAAGCAGTTTCACCACATGTGCTACTGGGAGCTGATGTGGTGC
TTTACCTACAAGGGTCAGTGGAAAATGGCCTACTTCTATGCCGACCTGCTGAGCAAGGAGAACT
CCTGGTCCAAGGCCACCTATATCTACATGAAGGCTGCCTACCTCAGCATGTTTGGGAAGGAAGA
CTACAAGCCATTCGGGGACGATGAAGTGGAGTTGTTCAGGGCTGTGCCAGGCTTGAAGCTCAAG
ATTGCTGGGAAATCTCTACCCACAGAGAAGTTTGCTATCCGGAAGTCCAGGCGCTACCTCTCCC
CCAACCCCATCTCCTTGCCAATCCCTGCTCTGGAGATGATGTACATCTGGAACGGCTATGCTGT
GATTGGGAAGCAGCAGAAGCTCACTGATGGGATGCTGGCAGTCATCACCAAAGCTGAAGAGATG
CTGGCCATGGGCCCAGAGAATGAGTACTCAGCAGATGACGACTGCCTGGTCAAATTGCTGAAAG
GCCTATGTCTGAAATACCTGGGCCGAATCCAAGAGGCAGAGGAGAATTTCAGGAGCATTTCTGC
AAATGAAAAGAAAATTAAATATGACCATTACTTGATTCCAAATGCTCTACTGGAGCTGGCCCTG
CTATTTATGGAGCAAGGCAGAAATGAAGAGGCCATCAAACTCCTAGACTCTGCAAAGCAAAACT
ACAAGAACTACTCCATGGAGTCAAGGACACATTTTCGGATCCAGGCAGCCACACTGCAGGCCAG
ATCTTCCCTAGGAGACGGCAGCAGATCCCCAGTCTCATCAGTGTCCCTGTAGCTTTCTGCAGCA
CTCTTGGGCTGGACAGAGCTCCTGGAAACATTTCAAAAGATCACCTCCCCTACCCTGCCCTTCC
TTGGGGTCCACCTGGTGCTCCAGTGGGATTGCACAAGAATGTCTGTGCAGAAGCAAAGACAGCC
TTTTTACCAGTGTGGCCAAAGCCTTCACACATACGGGTACCTGTTTTACACTGTGATGTTTAAG
AGAATGTATGAACAGTTTACATTTCTTTAGAATACATTGATGGGATTATAGTTGGTGTTTAAAA
AAAACCTACCCCCCCAAAACAAACAAAACCCTCTAACTGCCTGTTAATCTGTTTACTTCCTGAT
CTGGAAGTAATTTCCCTACTTGTTATCCAAGGCCAAACTGCTTTTCAAACCTCAGCTTTTGAGG
ATAGGAGTTCCTAGCATCTGAGACTTTGGCTTCAAAGTTCTACATTGCAAATTCCAGGACAGCC
AGAACTACACAATGAGACACTGGGTCTAAAAAAAATAAAACAAAACAAAACAAGTTGCTAACAT
TTAAAATTTGAGTTTTCATATAAATTTGTCTTCTAATTGAAAAAAAAAAAAGGCATGAGAATCA
GAAGCTCAAGGCCAGTCTTGGAGTCTGAAGCCAGATGAGGTGCTTAATTGAAA

hide sequence

RefSeq Acc Id:

XM_017593270 ⟹ XP_017448759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,417,625 - 129,441,779 (+)	NCBI
mRatBN7.2	5	124,187,274 - 124,204,740 (+)	NCBI
Rnor_6.0	5	129,067,281 - 129,082,849 (+)	NCBI

Sequence:

show sequence

CGAAGGGTGAGAGCCACAGACACTTCGAAGGAGGGGTGAAGCTCGGTGTAGGGGCCTTCAACCT
GGATGCCCTCCACACACCCACTGCCTCTGATCCCGCAGACGCTGTCCATGCTTCCCACTAGGAT
TCTGAGGCTACTGGAGTTTGTCGGGTTTTCAGGAAACAAGGACTACGGGCTGCTGCAGCTGGAG
GAGGGCGCGACCGGGCACAGCTTCCGCGCAGTGCTGTGCGTCATGCTGTTGCTGTGTTATCACA
CCTTCCTCACCTTCGTGCTCGGTACTGGGAATGTCAACATCGAGGAGGCAGAGAAGCTGCTGAA
GCCCTACCTGAACCGATACCCCAAGGGCGCCATCTTCCTGTTCTTTGCTGGGCGGATTGAAGCT
ATCAAAGGAAATATTGATGCTGCTGTCCGGCGGTTTGAAGAGTGCTGTGAGGCTCAGCAGCACT
GGAAGCAGTTTCACCACATGTGCTACTGGGAGCTGATGTGGTGCTTTACCTACAAGGGTCAGTG
GAAAATGGCCTACTTCTATGCCGACCTGCTGAGCAAGGAGAACTCCTGGTCCAAGGCCACCTAT
ATCTACATGAAGGCTGCCTACCTCAGCATGTTTGGGAAGGAAGACTACAAGCCATTCGGGGACG
ATGAAGTGGAGTTGTTCAGGGCTGTGCCAGGCTTGAAGCTCAAGATTGCTGGGAAATCTCTACC
CACAGAGAAGTTTGCTATCCGGAAGTCCAGGCGCTACCTCTCCCCCAACCCCATCTCCTTGCCA
ATCCCTGCTCTGGAGATGATGTACATCTGGAACGGCTATGCTGTGATTGGGAAGCAGCAGAAGC
TCACTGATGGGATGCTGGCAGTCATCACCAAAGCTGAAGAGATGCTGGCCATGGGCCCAGAGAA
TGAGTACTCAGCAGATGACGACTGCCTGGTCAAATTGCTGAAAGGCCTATGTCTGAAATACCTG
GGCCGAATCCAAGAGGCAGAGGAGAATTTCAGGAGCATTTCTGCAAATGAAAAGAAAATTAAAT
ATGACCATTACTTGATTCCAAATGCTCTACTGGAGCTGGCCCTGCTATTTATGGAGCAAGGCAG
AAATGAAGAGGCCATCAAACTCCTAGACTCTGCAAAGCAAAACTACAAGAACTACTCCATGGAG
TCAAGGACACATTTTCGGATCCAGGCAGCCACACTGCAGGCCAGATCTTCCCTAGGAGACGGCA
GCAGATCCCCAGTCTCATCAGTGTCCCTGTAGCTTTCTGCAGCACTCTTGGGCTGGACAGAGCT
CCTGGAAACATTTCAAAAGATCACCTCCCCTACCCTGCCCTTCCTTGGGGTCCACCTGGTGCTC
CAGTGGGATTGCACAAGAATGTCTGTGCAGAAGCAAAGACAGCCTTTTTACCAGTGTGGCCAAA
GCCTTCACACATACGGGTACCTGTTTTACACTGTGATGTTTAAGAGAATGTATGAACAGTTTAC
ATTTCTTTAGAATACATTGATGGGATTATAGTTGGTGTTTAAAAAAAACCTACCCCCCCAAAAC
AAACAAAACCCTCTAACTGCCTGTTAATCTGTTTACTTCCTGATCTGGAAGTAATTTCCCTACT
TGTTATCCAAGGCCAAACTGCTTTTCAAACCTCAGCTTTTGAGGATAGGAGTTCCTAGCATCTG
AGACTTTGGCTTCAAAGTTCTACATTGCAAATTCCAGGACAGCCAGAACTACACAATGAGACAC
TGGGTCTAAAAAAAATAAAACAAAACAAAACAAGTTGCTAACATTTAAAATTTGAGTTTTCATA
TAAATTTGTCTTCTAATTGAAAAAAAAAAAAGGCATGAGAATCAGAAGCTCAAGGCCAGTCTTG
GAGTCTGAAGCCAGATGAGGTGCTTAATTGAAA

hide sequence

RefSeq Acc Id:

XM_039109556 ⟹ XP_038965484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,401,481 - 129,441,779 (+)	NCBI
mRatBN7.2	5	124,172,863 - 124,204,740 (+)	NCBI

RefSeq Acc Id:

XM_039109557 ⟹ XP_038965485

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,398,774 - 129,441,779 (+)	NCBI
mRatBN7.2	5	124,170,095 - 124,204,740 (+)	NCBI

RefSeq Acc Id:

XM_063287386 ⟹ XP_063143456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,379,560 - 129,441,779 (+)	NCBI

RefSeq Acc Id:

XM_063287387 ⟹ XP_063143457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,386,491 - 129,441,779 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001402755	(Get FASTA)	NCBI Sequence Viewer
	XP_006238644	(Get FASTA)	NCBI Sequence Viewer
	XP_008762175	(Get FASTA)	NCBI Sequence Viewer
	XP_017448759	(Get FASTA)	NCBI Sequence Viewer
	XP_038965484	(Get FASTA)	NCBI Sequence Viewer
	XP_038965485	(Get FASTA)	NCBI Sequence Viewer
	XP_063143456	(Get FASTA)	NCBI Sequence Viewer
	XP_063143457	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68701	(Get FASTA)	NCBI Sequence Viewer
	EDL90366	(Get FASTA)	NCBI Sequence Viewer
	EDL90367	(Get FASTA)	NCBI Sequence Viewer
	EDL90368	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013459
	ENSRNOP00000013459.6
	ENSRNOP00000054540.4
	ENSRNOP00000063929.2
	ENSRNOP00000067106
	ENSRNOP00000067106.3
	ENSRNOP00000099685
	ENSRNOP00000099685.1
	ENSRNOP00000101187
	ENSRNOP00000101187.1
	ENSRNOP00000103264.1

RefSeq Acc Id:	XP_008762175 ⟸ XM_008763953
- Peptide Label:	isoform X4
- UniProtKB:	A6JYY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQSLC QRHRRKSSVTDSFSSLVHRPTIDQFTEEEIHAEVCYAECLLQRAALTFLQDENMVSFIKGGIKV RNSYQTYKELDSLVQSSQYSKGESHRHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKD YGLLQLEEGATGHSFRAVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLF FAGRIEAIKGNIDAAVRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMAYFYADLLSKEN SWSKATYIYMKAAYLSMFGKEDYKPFGDDEVELFRAVPGLKLKIAGKSLPTEKFAIRKSRRYLS PNPISLPIPALEMMYIWNGYAVIGKQQKLTDGMLAVITKAEEMLAMGPENEYSADDDCLVKLLK GLCLKYLGRIQEAEENFRSISANEKKIKYDHYLIPNALLELALLFMEQGRNEEAIKLLDSAKQN YKNYSMESRTHFRIQAATLQARSSLGDGSRSPVSSVSL hide sequence

RefSeq Acc Id:	XP_006238644 ⟸ XM_006238582
- Peptide Label:	isoform X2
- UniProtKB:	B5DEK2 (UniProtKB/TrEMBL), D4A4G3 (UniProtKB/TrEMBL), A6JYY5 (UniProtKB/TrEMBL), M0R3L2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGQKGHKDSLYDCEGSPVSSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATI LEMQAMMTFDPQDILLAGNMMKEAQSLCQRHRRKSSVTDSFSSLVHRPTIDQFTEEEIHAEVCY AECLLQRAALTFLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYSKGESHRHFEGGVKLGV GAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGATGHSFRAVLCVMLLLCYHTFLTFVLG TGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEAIKGNIDAAVRRFEECCEAQQHWKQFHHMC YWELMWCFTYKGQWKMAYFYADLLSKENSWSKATYIYMKAAYLSMFGKEDYKPFGDDEVELFRA VPGLKLKIAGKSLPTEKFAIRKSRRYLSPNPISLPIPALEMMYIWNGYAVIGKQQKLTDGMLAV ITKAEEMLAMGPENEYSADDDCLVKLLKGLCLKYLGRIQEAEENFRSISANEKKIKYDHYLIPN ALLELALLFMEQGRNEEAIKLLDSAKQNYKNYSMESRTHFRIQAATLQARSSLGDGSRSPVSSV SL hide sequence

RefSeq Acc Id:

XP_017448759 ⟸ XM_017593270

- Peptide Label:

isoform X5

- Sequence:

show sequence

MPSTHPLPLIPQTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGATGHSFRAVLCVMLLLCYHT
FLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEAIKGNIDAAVRRFEECCEAQQHW
KQFHHMCYWELMWCFTYKGQWKMAYFYADLLSKENSWSKATYIYMKAAYLSMFGKEDYKPFGDD
EVELFRAVPGLKLKIAGKSLPTEKFAIRKSRRYLSPNPISLPIPALEMMYIWNGYAVIGKQQKL
TDGMLAVITKAEEMLAMGPENEYSADDDCLVKLLKGLCLKYLGRIQEAEENFRSISANEKKIKY
DHYLIPNALLELALLFMEQGRNEEAIKLLDSAKQNYKNYSMESRTHFRIQAATLQARSSLGDGS
RSPVSSVSL

hide sequence

RefSeq Acc Id:	XP_038965485 ⟸ XM_039109557
- Peptide Label:	isoform X4
- UniProtKB:	A6JYY6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965484 ⟸ XM_039109556
- Peptide Label:	isoform X4
- UniProtKB:	A6JYY6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000013459 ⟸ ENSRNOT00000013459

Ensembl Acc Id:

ENSRNOP00000054540 ⟸ ENSRNOT00000057729

Ensembl Acc Id:

ENSRNOP00000063929 ⟸ ENSRNOT00000072692

Ensembl Acc Id:

ENSRNOP00000067106 ⟸ ENSRNOT00000072396

RefSeq Acc Id:	NP_001402755 ⟸ NM_001415826
- UniProtKB:	A6JYY5 (UniProtKB/TrEMBL), M0R3L2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143456 ⟸ XM_063287386
- Peptide Label:	isoform X1
- UniProtKB:	F7F7D5 (UniProtKB/TrEMBL), A6JYY5 (UniProtKB/TrEMBL), M0R3L2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143457 ⟸ XM_063287387
- Peptide Label:	isoform X3
- UniProtKB:	M0RC03 (UniProtKB/TrEMBL), A6JYY5 (UniProtKB/TrEMBL), M0R3L2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099685 ⟸ ENSRNOT00000128949

Ensembl Acc Id:

ENSRNOP00000101187 ⟸ ENSRNOT00000144812

Ensembl Acc Id:

ENSRNOP00000103264 ⟸ ENSRNOT00000159369

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A4G3-F1-model_v2	AlphaFold	D4A4G3	1-602	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311126	AgrOrtholog
BioCyc Gene	G2FUF-40355	BioCyc
Ensembl Genes	ENSRNOG00000009519	Ensembl
	ENSRNOG00000047573	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013459	ENTREZGENE
	ENSRNOT00000013459.8	UniProtKB/TrEMBL
	ENSRNOT00000057729.6	UniProtKB/TrEMBL
	ENSRNOT00000072396	ENTREZGENE
	ENSRNOT00000072396.4	UniProtKB/TrEMBL
	ENSRNOT00000072692.5	UniProtKB/TrEMBL
	ENSRNOT00000128949	ENTREZGENE
	ENSRNOT00000128949.1	UniProtKB/TrEMBL
	ENSRNOT00000144812	ENTREZGENE
	ENSRNOT00000144812.1	UniProtKB/TrEMBL
	ENSRNOT00000159369.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	OMP_IML2_mit/TPR_39	UniProtKB/TrEMBL
	TPR-like_helical	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
NCBI Gene	298366	ENTREZGENE
PANTHER	PTHR31859	UniProtKB/TrEMBL
	PTHR31859:SF3	UniProtKB/TrEMBL
Pfam	Deme6	UniProtKB/TrEMBL
PhenoGen	Ttc39a	PhenoGen
RatGTEx	ENSRNOG00000009519	RatGTEx
	ENSRNOG00000047573	RatGTEx
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	HCP-like	UniProtKB/TrEMBL
UniProt	A0ABK0KXX8_RAT	UniProtKB/TrEMBL
	A0ABK0LDB3_RAT	UniProtKB/TrEMBL
	A0ABK0LH69_RAT	UniProtKB/TrEMBL
	A0ABZ3NNP7_RAT	UniProtKB/TrEMBL
	A6JYY5	ENTREZGENE, UniProtKB/TrEMBL
	A6JYY6	ENTREZGENE, UniProtKB/TrEMBL
	B5DEK2	ENTREZGENE, UniProtKB/TrEMBL
	D4A4G3	ENTREZGENE
	F7F7D5	ENTREZGENE, UniProtKB/TrEMBL
	M0R3L2	ENTREZGENE, UniProtKB/TrEMBL
	M0RC03	ENTREZGENE
UniProt Secondary	D4A4G3	UniProtKB/TrEMBL
	M0RC03	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Ttc39a	tetratricopeptide repeat domain 39A	LOC108348114	tetratricopeptide repeat protein 39A	Data merged from RGD:11387498	737654	PROVISIONAL
2016-08-02	LOC108348114	tetratricopeptide repeat protein 39A			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-09-09	Ttc39a	tetratricopeptide repeat domain 39A	RGD1311126	similar to RIKEN cDNA 4922503N01	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1311126	similar to RIKEN cDNA 4922503N01	RGD1311126_predicted	similar to RIKEN cDNA 4922503N01 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1311126_predicted	similar to RIKEN cDNA 4922503N01 (predicted)	LOC298366_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC298366_predicted	similar to RIKEN cDNA 4922503N01 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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