Eef1e1 (eukaryotic translation elongation factor 1 epsilon 1) - Rat Genome Database

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Gene: Eef1e1 (eukaryotic translation elongation factor 1 epsilon 1) Rattus norvegicus
Analyze
Symbol: Eef1e1
Name: eukaryotic translation elongation factor 1 epsilon 1
RGD ID: 1311056
Description: Predicted to be involved in negative regulation of cell population proliferation; positive regulation of apoptotic process; and positive regulation of cellular senescence. Predicted to act upstream of or within cellular response to leukemia inhibitory factor; positive regulation of DNA damage response, signal transduction by p53 class mediator; and positive regulation of apoptotic signaling pathway. Predicted to be located in cytosol. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human EEF1E1 (eukaryotic translation elongation factor 1 epsilon 1); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: eukaryotic translation elongation factor 1 epsilon-1; LOC291057
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81726,354,247 - 26,364,953 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1726,354,228 - 26,370,687 (+)EnsemblGRCr8
mRatBN7.21726,148,652 - 26,159,358 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,148,633 - 26,215,720 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1726,015,462 - 26,026,146 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01727,619,040 - 27,629,724 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01725,963,458 - 25,974,170 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01726,785,017 - 26,795,723 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1726,785,029 - 26,797,161 (+)Ensemblrn6Rnor6.0
Rnor_5.01728,701,057 - 28,711,763 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41732,217,424 - 32,228,130 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1725,790,361 - 25,801,067 (+)NCBICelera
RGSC_v3.11732,220,267 - 32,231,049 (+)NCBI
Cytogenetic Map17p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-phenylbutyric acid  (ISO)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arecoline  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
coumarin  (EXP)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
isoflurane  (ISO)
ivermectin  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
Triptolide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Loss of expression of the tumour suppressor gene AIMP3 predicts survival following radiotherapy in muscle-invasive bladder cancer. Gurung PM, etal., Int J Cancer. 2015 Feb 1;136(3):709-20. doi: 10.1002/ijc.29022. Epub 2014 Jul 22.
3. Expression of AIMP1, 2 and 3, the scaffolds for the multi-tRNA synthetase complex, is downregulated in gastric and colorectal cancer. Kim SS, etal., Tumori. 2011 May-Jun;97(3):380-5. doi: 10.1700/912.10038.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Downregulation of lamin A by tumor suppressor AIMP3/p18 leads to a progeroid phenotype in mice. Oh YS, etal., Aging Cell. 2010 Oct;9(5):810-22. doi: 10.1111/j.1474-9726.2010.00614.x.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12060739   PMID:12477932   PMID:15680327   PMID:19131329   PMID:19289464   PMID:20439489   PMID:23376485   PMID:25465621  


Genomics

Comparative Map Data
Eef1e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81726,354,247 - 26,364,953 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1726,354,228 - 26,370,687 (+)EnsemblGRCr8
mRatBN7.21726,148,652 - 26,159,358 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,148,633 - 26,215,720 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1726,015,462 - 26,026,146 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01727,619,040 - 27,629,724 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01725,963,458 - 25,974,170 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01726,785,017 - 26,795,723 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1726,785,029 - 26,797,161 (+)Ensemblrn6Rnor6.0
Rnor_5.01728,701,057 - 28,711,763 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41732,217,424 - 32,228,130 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1725,790,361 - 25,801,067 (+)NCBICelera
RGSC_v3.11732,220,267 - 32,231,049 (+)NCBI
Cytogenetic Map17p12NCBI
EEF1E1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3868,073,360 - 8,102,548 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl68,073,360 - 8,102,573 (-)Ensemblhg38GRCh38
GRCh3768,073,593 - 8,102,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3668,024,638 - 8,047,780 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3468,024,637 - 8,047,780NCBI
Celera69,302,889 - 9,332,123 (-)NCBICelera
Cytogenetic Map6p24.3NCBI
HuRef67,951,056 - 7,980,298 (-)NCBIHuRef
CHM1_168,075,775 - 8,104,990 (-)NCBICHM1_1
T2T-CHM13v2.067,942,094 - 7,971,293 (-)NCBIT2T-CHM13v2.0
Eef1e1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391338,829,667 - 38,843,004 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1338,828,183 - 38,843,034 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381338,645,691 - 38,659,028 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1338,644,207 - 38,659,058 (-)Ensemblmm10GRCm38
MGSCv371338,737,560 - 38,750,897 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361338,653,160 - 38,666,476 (-)NCBIMGSCv36mm8
Celera1339,761,381 - 39,774,714 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1318.38NCBI
Eef1e1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554655,878,058 - 5,895,223 (+)Ensembl
ChiLan1.0NW_0049554655,878,055 - 5,895,232 (+)NCBIChiLan1.0ChiLan1.0
EEF1E1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2522,714,096 - 22,745,603 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1618,711,008 - 18,742,518 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v067,911,807 - 7,940,918 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.168,192,997 - 8,222,056 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl68,192,997 - 8,222,056 (-)EnsemblpanPan2panpan1.1
EEF1E1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,012,304 - 8,035,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha358,019,088 - 8,041,959 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0358,095,255 - 8,118,141 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl358,094,313 - 8,118,174 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1357,943,542 - 7,966,112 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,978,329 - 8,000,963 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0359,311,012 - 9,333,903 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Eef1e1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494616,253,122 - 16,269,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365344,522,180 - 4,532,548 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365344,522,115 - 4,532,514 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EEF1E1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl75,370,967 - 5,390,633 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.175,368,341 - 5,390,665 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.275,403,684 - 5,421,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EEF1E1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11764,058,992 - 64,082,187 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1764,059,011 - 64,082,586 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660448,071,279 - 8,094,622 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eef1e1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475617,561,510 - 17,583,105 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475617,561,484 - 17,580,225 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Eef1e1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11457,707,576 - 57,718,365 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Eef1e1
76 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:686
Count of miRNA genes:306
Interacting mature miRNAs:398
Transcripts:ENSRNOT00000022065
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171553702528637951Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022065   ⟹   ENSRNOP00000022065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1726,785,029 - 26,797,161 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111273   ⟹   ENSRNOP00000092572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1726,148,660 - 26,215,720 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118967   ⟹   ENSRNOP00000087601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1726,354,228 - 26,370,687 (+)Ensembl
mRatBN7.2 Ensembl1726,148,633 - 26,165,093 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142300   ⟹   ENSRNOP00000105610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1726,354,240 - 26,366,831 (+)Ensembl
RefSeq Acc Id: NM_001106106   ⟹   NP_001099576
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81726,354,247 - 26,364,953 (+)NCBI
mRatBN7.21726,148,652 - 26,159,358 (+)NCBI
Rnor_6.01726,785,017 - 26,795,723 (+)NCBI
Rnor_5.01728,701,057 - 28,711,763 (+)NCBI
RGSC_v3.41732,217,424 - 32,228,130 (+)RGD
Celera1725,790,361 - 25,801,067 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099576 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66841 (Get FASTA)   NCBI Sequence Viewer  
  EDL98251 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000087601.1
  ENSRNOP00000105610
  ENSRNOP00000105610.1
RefSeq Acc Id: NP_001099576   ⟸   NM_001106106
- UniProtKB: B2RYN3 (UniProtKB/TrEMBL),   A0A8I6AE61 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022065   ⟸   ENSRNOT00000022065
Ensembl Acc Id: ENSRNOP00000087601   ⟸   ENSRNOT00000118967
Ensembl Acc Id: ENSRNOP00000092572   ⟸   ENSRNOT00000111273
Ensembl Acc Id: ENSRNOP00000105610   ⟸   ENSRNOT00000142300
Protein Domains
GST C-terminal   Nuclear-export cofactor Arc1-like N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYN3-F1-model_v2 AlphaFold B2RYN3 1-174 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700388
Promoter ID:EPDNEW_R10912
Type:multiple initiation site
Name:Eef1e1_1
Description:eukaryotic translation elongation factor 1 epsilon 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01726,785,018 - 26,785,078EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311056 AgrOrtholog
BioCyc Gene G2FUF-9695 BioCyc
Ensembl Genes ENSRNOG00000016390 Ensembl
  ENSRNOG00000066344 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000118967.2 UniProtKB/TrEMBL
  ENSRNOT00000142300 ENTREZGENE
  ENSRNOT00000142300.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.10 UniProtKB/TrEMBL
  3.40.30.90 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9027959 IMAGE-MGC_LOAD
InterPro AIMP3/p18_C UniProtKB/TrEMBL
  Arc1-like_N UniProtKB/TrEMBL
  EEF1E1 UniProtKB/TrEMBL
  Glutathione-S-Trfase_C-like UniProtKB/TrEMBL
  Glutathione-S-Trfase_C_sf UniProtKB/TrEMBL
KEGG Report rno:291057 UniProtKB/TrEMBL
MGC_CLONE MGC:188732 IMAGE-MGC_LOAD
NCBI Gene 291057 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1 UniProtKB/TrEMBL
  PTHR44490 UniProtKB/TrEMBL
Pfam Arc1p_N_like UniProtKB/TrEMBL
PhenoGen Eef1e1 PhenoGen
PROSITE GST_CTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016390 RatGTEx
  ENSRNOG00000066344 RatGTEx
Superfamily-SCOP GST_C_like UniProtKB/TrEMBL
UniProt A0A8I6A4G8_RAT UniProtKB/TrEMBL
  A0A8I6AE61 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LXJ9_RAT UniProtKB/TrEMBL
  B2RYN3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Eef1e1  eukaryotic translation elongation factor 1 epsilon 1   Eef1e1_predicted  eukaryotic translation elongation factor 1 epsilon 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Eef1e1_predicted  eukaryotic translation elongation factor 1 epsilon 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED