Zfat (zinc finger and AT hook domain containing) - Rat Genome Database

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Gene: Zfat (zinc finger and AT hook domain containing) Rattus norvegicus
Analyze
Symbol: Zfat
Name: zinc finger and AT hook domain containing
RGD ID: 1310886
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within hematopoietic progenitor cell differentiation and spongiotrophoblast layer development. Predicted to be located in cytosol and nucleus. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362925; ZFAT zinc finger 1; Zfat1; Zfp406; zinc finger protein 406; zinc finger protein ZFAT
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87101,775,916 - 101,951,135 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7101,775,916 - 101,943,237 (-)EnsemblGRCr8
mRatBN7.2799,886,954 - 100,054,288 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl799,886,954 - 100,054,274 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7101,651,871 - 101,826,734 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07103,853,558 - 104,028,415 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07103,772,860 - 103,947,722 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07109,037,777 - 109,207,511 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7109,037,845 - 109,205,354 (-)Ensemblrn6Rnor6.0
Rnor_5.07108,980,615 - 109,149,677 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47105,570,121 - 105,736,965 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera796,398,419 - 96,565,690 (-)NCBICelera
RGSC_v3.17105,604,960 - 105,771,196 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20660741  


Genomics

Comparative Map Data
Zfat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87101,775,916 - 101,951,135 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7101,775,916 - 101,943,237 (-)EnsemblGRCr8
mRatBN7.2799,886,954 - 100,054,288 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl799,886,954 - 100,054,274 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7101,651,871 - 101,826,734 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07103,853,558 - 104,028,415 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07103,772,860 - 103,947,722 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07109,037,777 - 109,207,511 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7109,037,845 - 109,205,354 (-)Ensemblrn6Rnor6.0
Rnor_5.07108,980,615 - 109,149,677 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47105,570,121 - 105,736,965 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera796,398,419 - 96,565,690 (-)NCBICelera
RGSC_v3.17105,604,960 - 105,771,196 (-)NCBI
Cytogenetic Map7q34NCBI
ZFAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388134,477,788 - 134,832,339 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8134,477,788 - 134,713,127 (-)Ensemblhg38GRCh38
GRCh378135,490,031 - 135,725,274 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368135,559,213 - 135,794,463 (-)NCBIBuild 36Build 36hg18NCBI36
Build 348135,559,212 - 135,794,463NCBI
Celera8131,694,988 - 131,897,996 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8130,805,939 - 131,040,970 (-)NCBIHuRef
CHM1_18135,532,148 - 135,767,381 (-)NCBICHM1_1
T2T-CHM13v2.08135,595,711 - 135,950,237 (-)NCBIT2T-CHM13v2.0
Zfat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391567,955,563 - 68,130,771 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1567,955,613 - 68,130,705 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381568,083,714 - 68,258,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1568,083,764 - 68,258,856 (-)Ensemblmm10GRCm38
MGSCv371567,915,300 - 68,090,418 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361567,913,435 - 68,088,516 (-)NCBIMGSCv36mm8
Celera1569,599,468 - 69,776,200 (-)NCBICelera
Cytogenetic Map15D2NCBI
cM Map1529.44NCBI
Zfat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554618,862,686 - 9,137,182 (-)Ensembl
ChiLan1.0NW_0049554618,863,200 - 9,152,307 (-)NCBIChiLan1.0ChiLan1.0
ZFAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27151,866,418 - 152,188,108 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18127,397,970 - 127,719,658 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08131,148,934 - 131,383,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18134,102,879 - 134,337,255 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8134,102,879 - 134,337,255 (-)EnsemblpanPan2panpan1.1
ZFAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11330,649,971 - 30,842,941 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1330,650,654 - 30,841,543 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1330,628,405 - 30,818,191 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01331,015,917 - 31,208,692 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1331,015,920 - 31,208,860 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11330,738,470 - 30,928,309 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01330,838,493 - 31,027,240 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01331,187,246 - 31,377,513 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zfat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053037,551,227 - 7,724,930 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647014,977,496 - 15,151,041 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647014,974,493 - 15,151,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl47,016,774 - 7,174,985 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.146,969,692 - 7,174,989 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.246,821,635 - 6,852,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18128,882,903 - 129,115,594 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8128,882,905 - 129,115,454 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603910,976,877 - 11,210,561 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfat
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11440,197,556 - 40,376,092 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfat
1545 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:74
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000068291
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)796700404111672180Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
D7Rat137  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87101,894,541 - 101,894,714 (+)Marker Load Pipeline
mRatBN7.27100,005,580 - 100,005,753 (+)MAPPERmRatBN7.2
Rnor_6.07109,156,622 - 109,156,794NCBIRnor6.0
Rnor_5.07109,099,451 - 109,099,623UniSTSRnor5.0
RGSC_v3.47105,688,747 - 105,688,919UniSTSRGSC3.4
RGSC_v3.47105,688,746 - 105,688,919RGDRGSC3.4
Celera796,517,061 - 96,517,233UniSTS
RGSC_v3.17105,722,673 - 105,723,165RGD
SHRSP x BN Map757.9199UniSTS
SHRSP x BN Map757.9199RGD
Cytogenetic Map7q34UniSTS
D7Got85  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27100,006,584 - 100,006,727 (+)MAPPERmRatBN7.2
Rnor_6.07109,157,626 - 109,157,768NCBIRnor6.0
Rnor_5.07109,100,455 - 109,100,597UniSTSRnor5.0
RGSC_v3.47105,689,751 - 105,689,893RGDRGSC3.4
RGSC_v3.47105,689,751 - 105,689,893UniSTSRGSC3.4
Celera796,518,065 - 96,518,207UniSTS
RGSC_v3.17105,723,981 - 105,724,123RGD
RH 3.4 Map7688.0RGD
RH 3.4 Map7688.0UniSTS
RH 2.0 Map7527.5RGD
Cytogenetic Map7q34UniSTS
D7Got79  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2799,929,570 - 99,929,753 (+)MAPPERmRatBN7.2
Rnor_6.07109,080,407 - 109,080,589NCBIRnor6.0
Rnor_5.07109,023,236 - 109,023,418UniSTSRnor5.0
RGSC_v3.47105,612,738 - 105,612,920RGDRGSC3.4
RGSC_v3.47105,612,739 - 105,612,921UniSTSRGSC3.4
Celera796,441,023 - 96,441,209UniSTS
RGSC_v3.17105,646,968 - 105,647,150RGD
RH 3.4 Map7686.69UniSTS
RH 3.4 Map7686.69RGD
Cytogenetic Map7q34UniSTS
BE110410  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2799,887,502 - 99,887,675 (+)MAPPERmRatBN7.2
Rnor_6.07109,038,337 - 109,038,509NCBIRnor6.0
Rnor_5.07108,981,166 - 108,981,338UniSTSRnor5.0
RGSC_v3.47105,570,670 - 105,570,842UniSTSRGSC3.4
Celera796,398,968 - 96,399,140UniSTS
RH 3.4 Map7687.1UniSTS
Cytogenetic Map7q34UniSTS
RH135231  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2799,887,054 - 99,887,249 (+)MAPPERmRatBN7.2
Rnor_6.07109,037,889 - 109,038,083NCBIRnor6.0
Rnor_5.07108,980,718 - 108,980,912UniSTSRnor5.0
RGSC_v3.47105,570,222 - 105,570,416UniSTSRGSC3.4
Celera796,398,520 - 96,398,714UniSTS
RH 3.4 Map7687.1UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000068291   ⟹   ENSRNOP00000059224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7101,775,916 - 101,943,237 (-)Ensembl
mRatBN7.2 Ensembl799,886,954 - 100,054,274 (-)Ensembl
Rnor_6.0 Ensembl7109,037,845 - 109,205,354 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093145   ⟹   ENSRNOP00000076243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7109,038,400 - 109,205,194 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl799,978,550 - 100,020,882 (-)Ensembl
Rnor_6.0 Ensembl7109,129,914 - 109,159,979 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7109,137,874 - 109,160,089 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094312   ⟹   ENSRNOP00000092217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl799,986,136 - 100,054,148 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000122240   ⟹   ENSRNOP00000100205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7101,775,916 - 101,910,616 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147644   ⟹   ENSRNOP00000103056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7101,792,113 - 101,943,237 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147975   ⟹   ENSRNOP00000112088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7101,775,916 - 101,943,237 (-)Ensembl
RefSeq Acc Id: NM_001134957   ⟹   NP_001128429
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87101,775,916 - 101,943,237 (-)NCBI
mRatBN7.2799,886,954 - 100,054,277 (-)NCBI
Rnor_6.07109,037,788 - 109,205,369 (-)NCBI
Rnor_5.07108,980,615 - 109,149,677 (-)NCBI
RGSC_v3.47105,570,121 - 105,736,965 (-)RGD
Celera796,398,419 - 96,565,690 (-)RGD
Sequence:
RefSeq Acc Id: NM_001414958   ⟹   NP_001401887
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87101,775,916 - 101,943,237 (-)NCBI
mRatBN7.2799,886,954 - 100,054,277 (-)NCBI
RefSeq Acc Id: XM_006241713   ⟹   XP_006241775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87101,775,916 - 101,950,957 (-)NCBI
mRatBN7.2799,886,954 - 100,054,288 (-)NCBI
Rnor_6.07109,037,777 - 109,207,511 (-)NCBI
Rnor_5.07108,980,615 - 109,149,677 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594961   ⟹   XP_017450450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87101,775,916 - 101,942,963 (-)NCBI
mRatBN7.2799,886,954 - 100,053,993 (-)NCBI
Rnor_6.07109,037,777 - 109,205,129 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079527   ⟹   XP_038935455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87101,810,049 - 101,951,135 (-)NCBI
mRatBN7.2799,921,086 - 100,054,288 (-)NCBI
RefSeq Acc Id: XR_005486668
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87101,801,156 - 101,951,126 (-)NCBI
mRatBN7.2799,912,193 - 100,054,288 (-)NCBI
RefSeq Acc Id: XR_005486669
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87101,801,156 - 101,951,123 (-)NCBI
mRatBN7.2799,912,193 - 100,054,288 (-)NCBI
RefSeq Acc Id: NP_001128429   ⟸   NM_001134957
- Peptide Label: isoform 2
- UniProtKB: D4A2U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241775   ⟸   XM_006241713
- Peptide Label: isoform X1
- UniProtKB: D4A2U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450450   ⟸   XM_017594961
- Peptide Label: isoform X2
- UniProtKB: A6HRT5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076243   ⟸   ENSRNOT00000093145
Ensembl Acc Id: ENSRNOP00000059224   ⟸   ENSRNOT00000068291
RefSeq Acc Id: XP_038935455   ⟸   XM_039079527
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000092217   ⟸   ENSRNOT00000094312
RefSeq Acc Id: NP_001401887   ⟸   NM_001414958
- Peptide Label: isoform 1
Ensembl Acc Id: ENSRNOP00000112088   ⟸   ENSRNOT00000147975
Ensembl Acc Id: ENSRNOP00000100205   ⟸   ENSRNOT00000122240
Ensembl Acc Id: ENSRNOP00000103056   ⟸   ENSRNOT00000147644
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2Q6E1-F1-model_v2 AlphaFold A0A1W2Q6E1 1-1235 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695368
Promoter ID:EPDNEW_R5893
Type:single initiation site
Name:Zfat_1
Description:zinc finger and AT hook domain containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07109,205,363 - 109,205,423EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310886 AgrOrtholog
BioCyc Gene G2FUF-33107 BioCyc
Ensembl Genes ENSRNOG00000025140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068291 ENTREZGENE
  ENSRNOT00000068291.4 UniProtKB/TrEMBL
  ENSRNOT00000122240.1 UniProtKB/TrEMBL
  ENSRNOT00000147644.1 UniProtKB/TrEMBL
  ENSRNOT00000147975.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene 362925 ENTREZGENE
PANTHER TRANSCRIPTION FACTOR (TFIIIA), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05150)-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_5 UniProtKB/TrEMBL
PhenoGen Zfat PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025140 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0ABK0LAS2_RAT UniProtKB/TrEMBL
  A0ABK0LHT8_RAT UniProtKB/TrEMBL
  A0ABK0M5W9_RAT UniProtKB/TrEMBL
  A6HRT5 ENTREZGENE, UniProtKB/TrEMBL
  D4A2U0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-02 Zfat  zinc finger and AT hook domain containing  Zfat1  ZFAT zinc finger 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Zfat1  ZFAT zinc finger 1  Zfp406_predicted  zinc finger protein 406 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Zfp406_predicted  zinc finger protein 406 (predicted)      Symbol and Name status set to approved 70820 APPROVED