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Gene: Pgbd5 (piggyBac transposable element derived 5) Rattus norvegicus

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Symbol:

Pgbd5

Name:

piggyBac transposable element derived 5

RGD ID:

1310825

Description:

Predicted to enable transposase activity. Predicted to be involved in non-replicative DNA transposition. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human PGBD5 (piggyBac transposable element derived 5); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC292098; piggyBac transposable element-derived protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,234,171 - 69,299,315 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	69,234,171 - 69,299,560 (-)	Ensembl				GRCr8
mRatBN7.2	19	52,336,751 - 52,401,906 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,336,751 - 52,402,397 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	59,122,078 - 59,187,267 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	59,970,315 - 60,036,388 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,048,532 - 62,113,725 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,126,110 - 57,192,182 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,127,054 - 57,192,095 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	67,834,478 - 67,900,336 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	54,542,070 - 54,608,511 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	51,707,799 - 51,772,592 (-)	NCBI		Celera
RGSC_v3.1	19	54,546,634 - 54,580,371 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neoplastic Cell Transformation (ISO)

rhabdoid cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP,ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,4-dichloroaniline (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

diuron (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

gentamycin (EXP)

glyphosate (EXP)

L-methionine (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methamphetamine (EXP)

mono(2-ethylhexyl) phthalate (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

progesterone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

non-replicative DNA transposition (IBA,IEA,ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

transposase activity (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:24180413	PMID:26406119	PMID:27491780

Genomics

Comparative Map Data

Pgbd5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,234,171 - 69,299,315 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	69,234,171 - 69,299,560 (-)	Ensembl				GRCr8
mRatBN7.2	19	52,336,751 - 52,401,906 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,336,751 - 52,402,397 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	59,122,078 - 59,187,267 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	59,970,315 - 60,036,388 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,048,532 - 62,113,725 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,126,110 - 57,192,182 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,127,054 - 57,192,095 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	67,834,478 - 67,900,336 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	54,542,070 - 54,608,511 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	51,707,799 - 51,772,592 (-)	NCBI		Celera
RGSC_v3.1	19	54,546,634 - 54,580,371 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

PGBD5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	230,314,490 - 230,426,332 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	230,314,490 - 230,426,332 (-)	Ensembl			hg38	GRCh38
GRCh37	1	230,450,236 - 230,562,078 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	228,524,015 - 228,579,990 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	226,764,127 - 226,820,102	NCBI
Celera	1	203,723,266 - 203,779,187 (-)	NCBI		Celera
Cytogenetic Map	1	q42.13	NCBI
HuRef	1	200,957,596 - 201,046,325 (-)	NCBI		HuRef
HuRef	1	200,945,651 - 200,953,319 (-)	NCBI		HuRef
CHM1_1	1	231,729,952 - 231,834,738 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	229,693,950 - 229,806,671 (-)	NCBI		T2T-CHM13v2.0

Pgbd5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	125,095,788 - 125,161,230 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	125,095,788 - 125,166,397 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	124,369,049 - 124,433,936 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	124,369,049 - 124,439,658 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	126,892,949 - 126,957,836 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	127,255,139 - 127,320,026 (-)	NCBI		MGSCv36	mm8
Celera	8	128,654,449 - 128,719,752 (-)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI
cM Map	8	72.65	NCBI

Pgbd5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	8,032,220 - 8,090,898 (+)	Ensembl
ChiLan1.0	NW_004955492	8,032,220 - 8,090,898 (+)	NCBI	ChiLan1.0	ChiLan1.0

PGBD5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	18,781,686 - 18,887,031 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	18,974,171 - 19,079,180 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	205,869,632 - 205,974,330 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	210,897,173 - 211,000,549 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	210,897,173 - 211,000,555 (-)	Ensembl			panPan2	panpan1.1

PGBD5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	8,989,542 - 9,025,836 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	8,989,430 - 9,046,954 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	8,910,647 - 9,017,617 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	8,943,416 - 9,049,944 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	8,942,959 - 9,049,242 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	8,953,894 - 9,060,829 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	9,069,047 - 9,175,572 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	9,296,509 - 9,403,256 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pgbd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	43,701,625 - 43,721,108 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	19,866,802 - 19,886,354 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	19,866,855 - 19,886,330 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PGBD5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	59,842,468 - 59,935,021 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	59,842,653 - 59,935,025 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	64,655,307 - 64,747,538 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PGBD5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	67,581,074 - 67,686,624 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	67,581,073 - 67,686,931 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	69,481,786 - 69,588,201 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pgbd5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	19,007,144 - 19,068,690 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624775	19,007,463 - 19,068,619 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pgbd5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	43,891,945 - 43,954,634 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	229
Count of miRNA genes:	159
Interacting mature miRNAs:	183
Transcripts:	ENSRNOT00000058080
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	61249161	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	7	51	153	73	72	41	60	41	6	263	138	9	132	61	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000058080 ⟹ ENSRNOP00000054889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	69,234,171 - 69,299,560 (-)	Ensembl
mRatBN7.2 Ensembl	19	52,336,751 - 52,402,397 (-)	Ensembl
Rnor_6.0 Ensembl	19	57,127,054 - 57,192,095 (-)	Ensembl

RefSeq Acc Id:

NM_001106198 ⟹ NP_001099668

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,234,171 - 69,299,315 (-)	NCBI
mRatBN7.2	19	52,336,751 - 52,401,906 (-)	NCBI
Rnor_6.0	19	57,127,054 - 57,192,095 (-)	NCBI
Rnor_5.0	19	67,834,478 - 67,900,336 (-)	NCBI
RGSC_v3.4	19	54,542,070 - 54,608,511 (-)	RGD
Celera	19	51,707,799 - 51,772,592 (-)	RGD

Sequence:

show sequence

TGGAGGCAGCCCGTGCACGCTACGAGAGCCTGCACATCTCGGACGATGTGTTCGGCGAGTCGGG
CCCGGACAGCGGCGGGAACCCCTTCTACAGCACCTCCGCAGCCTCGCGCTCCTCCTCGGCCGCC
TCCTCGGACGATGAGCGCGAGCGCCCAGCGCCTCCAGGGACCGCCCCGCCACCCCACGCCGCGG
ATCCCTTGGAACTGGAGGAGGACGAGACCGGTGGGGGTTGGAGCACCGTGCTGAGGGATCGCCC
GCCTCCGCGCTTCGAGGACACCGGTGGTCCAACCAGAAAGATGCCGCCCAGCGCTAGCGCGGTG
GACTTCTTCCAGCTCTTTGTCCCGGACAACGTGCTCAAGAACATGGTGGTGCAGACCAACATGT
ACGCCAGGAAGTTCCAGGAGCGTTTTGGCAGTGACGGTGCCTGGGTGGAGGTGACACTGGCAGA
GATGAAGGCCTTCCTGGGCTACGTGATCTCTACCAGTGTCTCGCACTGTGAGTCAGTACTCAGC
ATTTGGAGTGGAGGCTTCTATAGCAACCGGAGCCTCGCCCTCGTCATGAGCCAGGCGCGTTTCG
AGAAGATCCTCAAGTATTTCCATGTTGTGGCCTTCCGTTCCAGCCAGACCACGCACGGGCTCTA
CAAGGTCCAGCCCTTTCTCGACTCCCTGCAGAGTGGCTTTGACGCTGCCTTCAGGCCATCCCAG
ACCCAGGTGCTACATGAACCCCTGATTGACGAGGACCCTGTGTTCATTGCCACGTGCACGGAGC
GAGAGCTGCGGAAGCGGAAAAAGCGGAAATTCAGCCTGTGGGTCCGCCAATGCTCTTCCACGGG
CTTCATCATCCAGATCTATGTCCACCTAAAGGAAGGCGGCGGCCCCGATGGCCTGGACGCTCTG
AAGAACAAGCCACAGCTGCACAGCATGGTGGCCCGGAGCCTGTGCCGGAACGCGGCTGGGAAGA
ACTACATCATCTTCACAGGGCCCAGCATCACCAGCCTCACTCTGTTTGAAGAATTTGAGAAGCA
AGGCATCTACTGCTGTGGTCTCCTCAGCTCCAGGAAGAGTGACTGCACAGGCCTCCCTCCATCC
ATGCTGACCAACCCTGCCACCCCACTCGCCCGGGGCCAGCACCAGATCAGGACAAAGGGTAACA
TGTCTCTGATCTGCTGGTACAACAAGGGGCACTTCCGCTTCCTGACCAACGCCTACTCCCCAGT
GCAGCAAGGCGTCATCATCAAGCGTCGGAGCGGGGAAATCCCCTGCCCTCTGGCCGTGGAGGCT
TTTGCTGCTCACCTCAGCTACATCTGCAGATACGACGACAAGTACAGCAAGTATTTCATCTCTC
ACAAGCCAAACAAGACATGGCAGCAAGTGTTCTGGTTTGCCATCAGCATCGCCGTCAACAACGC
CTACATCCTGTACAAAATGTCAGACGCCTACCATGTGAAGAGGTACAGCCGGGCCCAGTTTGGA
GAGAGACTTGTGAGGGAGCTGCTGGGCCTGGAGGACGAATCACCAGCCCACTGAGACTGCTGGC
CCAGGGGTGTCAGGGACAAGGAAGGAGCCTGTCACCTGCCTGTCCGTTGGAGGGCCCATGTGGG
GTCAGAGGTCTGCTTTACACATCACCCCTCCACCCCCACAAAGGGTGGCTCCCCAGAGCCTGAT
ACAGGTGACTGGATAGGCCGTGACCTCAGAAGGTACCAGCGACAGGACCAGTGGACTGTGCTCT
GATTTCCAGAGCTCGAGAGGTCATGATGGGCTCAAGTTCAGACCAGGCAAGCTTACAAAACGGG
CCACTCAGTGCCACCCCCACAGCACTCGGGGCATGGGTTCCCAGCGCTCTCCCATTCGATGGGC
TTAGATGGTTCCCTTGGAAGAAGAGAAGCCATGTGGTGCCATTAAAACTCAAAGCCAACCGGAC
AGGAGCGGCTGCAGCTTGCTGACTGTAAACGGGGTGTTCCTGTTCCATTCTCTGGGGCTGTGAC
GAGCAGGGTGAGGAGGGGAGAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099668	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96728	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054889.3

RefSeq Acc Id:

NP_001099668 ⟸ NM_001106198

- UniProtKB:

A6KJ06 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPPSASAVDFFQLFVPDNVLKNMVVQTNMYARKFQERFGSDGAWVEVTLAEMKAFLGYVISTSV
SHCESVLSIWSGGFYSNRSLALVMSQARFEKILKYFHVVAFRSSQTTHGLYKVQPFLDSLQSGF
DAAFRPSQTQVLHEPLIDEDPVFIATCTERELRKRKKRKFSLWVRQCSSTGFIIQIYVHLKEGG
GPDGLDALKNKPQLHSMVARSLCRNAAGKNYIIFTGPSITSLTLFEEFEKQGIYCCGLLSSRKS
DCTGLPPSMLTNPATPLARGQHQIRTKGNMSLICWYNKGHFRFLTNAYSPVQQGVIIKRRSGEI
PCPLAVEAFAAHLSYICRYDDKYSKYFISHKPNKTWQQVFWFAISIAVNNAYILYKMSDAYHVK
RYSRAQFGERLVRELLGLEDESPAH

hide sequence

Ensembl Acc Id:

ENSRNOP00000054889 ⟸ ENSRNOT00000058080

Protein Domains

PiggyBac transposable element-derived protein

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZSZ4-F1-model_v2	AlphaFold	D3ZSZ4	1-409	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310825	AgrOrtholog
BioCyc Gene	G2FUF-5249	BioCyc
Ensembl Genes	ENSRNOG00000026791	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000058080.4	UniProtKB/TrEMBL
InterPro	PGBD	UniProtKB/TrEMBL
	PGBD5	UniProtKB/TrEMBL
KEGG Report	rno:292098	UniProtKB/TrEMBL
NCBI Gene	292098	ENTREZGENE
PANTHER	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 5	UniProtKB/TrEMBL
	PTHR28576	UniProtKB/TrEMBL
Pfam	DDE_Tnp_1_7	UniProtKB/TrEMBL
PhenoGen	Pgbd5	PhenoGen
RatGTEx	ENSRNOG00000026791	RatGTEx
UniProt	A6KJ06	ENTREZGENE, UniProtKB/TrEMBL
	D3ZSZ4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Pgbd5	piggyBac transposable element derived 5	Pgbd5_predicted	piggyBac transposable element derived 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pgbd5_predicted	piggyBac transposable element derived 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD