Advanced Search (OLGA)

Gene: Larp4b (La ribonucleoprotein 4B) Rattus norvegicus

Analyze

Symbol:

Larp4b

Name:

La ribonucleoprotein 4B

RGD ID:

1310713

Description:

Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in positive regulation of 3'-UTR-mediated mRNA stabilization and positive regulation of translation. Predicted to be located in nucleolus. Predicted to be active in cytoplasmic stress granule and cytosol. Orthologous to human LARP4B (La ribonucleoprotein 4B); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

La ribonucleoprotein domain family, member 4B; La ribonucleoprotein domain family, member 5; la-related protein 4B; Larp5; LOC307070; RGD1310713; similar to expressed sequence AI256361

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LARP4B (La ribonucleoprotein 4B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Larp4b (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Larp4b (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LARP4B (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LARP4B (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Larp4b (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LARP4B (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LARP4B (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Larp4b (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Larp4b (La ribonucleoprotein 4B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	IGFBP3 (insulin like growth factor binding protein 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	LARP4B (La ribonucleoprotein 4B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LARP4B (La ribonucleoprotein 4B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Larp4b (La ribonucleoprotein 4B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Larp4b (La ribonucleoprotein 4B)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	larp4b (La ribonucleoprotein domain family, member 4B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	larp4b (La ribonucleoprotein domain family, member 4B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	larp-5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	larp-5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Larp4B	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Larp4B	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	larp4b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	larp4b	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	65,813,125 - 65,908,920 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	65,830,022 - 65,908,676 (-)	Ensembl				GRCr8
mRatBN7.2	17	61,138,663 - 61,217,423 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	61,138,709 - 61,187,960 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	64,342,474 - 64,421,256 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	68,345,568 - 68,424,348 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	62,506,614 - 62,585,282 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	17	67,142,388 - 67,221,174 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	17	66,606,576 - 66,685,358 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	17	64,210,879 - 64,289,661 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	17	65,276,934 - 65,355,581 (-)	NCBI		F344_StmMcwi
Rnor_6.0	17	63,236,007 - 63,317,298 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	63,265,407 - 63,314,019 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	65,007,058 - 65,085,258 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	71,931,605 - 72,010,103 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	59,363,334 - 59,441,817 (+)	NCBI		Celera
RGSC_v3.1	17	71,943,684 - 72,020,936 (-)	NCBI
Cytogenetic Map	17	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Familial Prostate Cancer (ISO)

myoepithelioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

calcitriol (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

choline (ISO)

chrysene (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

decabromodiphenyl ether (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

FR900359 (ISO)

gemcitabine (ISO)

gentamycin (EXP)

ivermectin (ISO)

L-methionine (ISO)

lead(0) (ISO)

methapyrilene (EXP,ISO)

methidathion (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP)

phenobarbital (ISO)

rac-lactic acid (ISO)

selenium atom (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of 3'-UTR-mediated mRNA stabilization (ISO)

positive regulation of translation (IBA,IEA,ISO)

Cellular Component

cytoplasmic stress granule (IBA,ISO)

cytosol (IBA,IEA,ISO)

Molecular Function

mRNA 3'-UTR binding (IBA,IEA,ISO)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19946888	PMID:20573744	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Larp4b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	65,813,125 - 65,908,920 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	65,830,022 - 65,908,676 (-)	Ensembl				GRCr8
mRatBN7.2	17	61,138,663 - 61,217,423 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	61,138,709 - 61,187,960 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	64,342,474 - 64,421,256 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	68,345,568 - 68,424,348 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	62,506,614 - 62,585,282 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	17	67,142,388 - 67,221,174 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	17	66,606,576 - 66,685,358 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	17	64,210,879 - 64,289,661 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	17	65,276,934 - 65,355,581 (-)	NCBI		F344_StmMcwi
Rnor_6.0	17	63,236,007 - 63,317,298 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	63,265,407 - 63,314,019 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	65,007,058 - 65,085,258 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	71,931,605 - 72,010,103 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	59,363,334 - 59,441,817 (+)	NCBI		Celera
RGSC_v3.1	17	71,943,684 - 72,020,936 (-)	NCBI
Cytogenetic Map	17	q12.1	NCBI

LARP4B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	806,914 - 988,341 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	806,915 - 931,821 (-)	Ensembl			hg38	GRCh38
GRCh37	10	852,854 - 977,645 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	845,484 - 921,702 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	10	805,808 - 882,035 (-)	NCBI		Celera
Cytogenetic Map	10	p15.3	NCBI
HuRef	10	792,203 - 916,997 (-)	NCBI		HuRef
CHM1_1	10	852,377 - 977,610 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	804,686 - 932,709 (-)	NCBI		T2T-CHM13v2.0

Larp4b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	9,143,643 - 9,224,487 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	9,143,917 - 9,224,487 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	9,093,653 - 9,174,451 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	9,093,881 - 9,174,451 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	9,093,151 - 9,172,355 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	9,093,151 - 9,172,355 (+)	NCBI		MGSCv36	mm8
Celera	13	9,036,118 - 9,115,259 (+)	NCBI		Celera
Cytogenetic Map	13	A1	NCBI
cM Map	13	5.0	NCBI

Larp4b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	138,374 - 193,145 (+)	Ensembl
ChiLan1.0	NW_004955492	113,900 - 197,753 (+)	NCBI	ChiLan1.0	ChiLan1.0

LARP4B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	13,330,417 - 13,452,683 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	13,335,739 - 13,457,978 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	842,621 - 966,106 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	894,957 - 971,160 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	894,957 - 971,154 (-)	Ensembl			panPan2	panpan1.1

LARP4B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	34,026,788 - 34,122,144 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	34,026,534 - 34,119,443 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	31,062,127 - 31,156,072 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	34,411,932 - 34,506,183 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	34,412,588 - 34,506,181 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	31,495,099 - 31,589,276 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	32,334,911 - 32,429,094 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	33,081,930 - 33,176,119 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Larp4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	37,073,263 - 37,137,741 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	13,238,528 - 13,299,448 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	13,238,456 - 13,302,962 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LARP4B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	10	68,621,596 - 68,707,894 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	75,646,959 - 75,711,019 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LARP4B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	778,786 - 898,263 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666051	5,811,979 - 5,950,512 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Larp4b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	10,083,476 - 10,145,712 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624775	10,055,200 - 10,149,178 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Larp4b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	22,986,259 - 23,064,823 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Larp4b
406 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	785
Count of miRNA genes:	338
Interacting mature miRNAs:	463
Transcripts:	ENSRNOT00000058548
Prediction methods:	Microtar, Miranda, Pita, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	30066472	75066472	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	58194064	87388164	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	35446949	75762341	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	26522051	71522051	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	22019705	67019705	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
61466	Niddm12	Non-insulin dependent diabetes mellitus QTL 12	3.2	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	65154872	93515804	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
7394837	Memor18	Memory QTL 18			exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	17	61091446	68550213	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23858926	68858926	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27233445	72233445	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23858926	68858926	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23858926	68858926	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23858926	68858926	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23858926	68858926	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63697147	82818564	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	64569820	86954580	Rat

Markers in Region

D17Rat124

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	65,868,876 - 65,869,010 (+)	Marker Load Pipeline
mRatBN7.2	17	61,177,516 - 61,177,650 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	63,275,714 - 63,275,847	NCBI	Rnor6.0
Rnor_5.0	17	65,046,765 - 65,046,898	UniSTS	Rnor5.0
RGSC_v3.4	17	71,970,266 - 71,970,400	RGD	RGSC3.4
RGSC_v3.4	17	71,970,267 - 71,970,400	UniSTS	RGSC3.4
Celera	17	59,402,870 - 59,403,009	UniSTS
RGSC_v3.1	17	71,981,067 - 71,981,616	RGD
SHRSP x BN Map	17	32.6999	UniSTS
SHRSP x BN Map	17	32.6999	RGD
Cytogenetic Map	17	q12.1	UniSTS

RH129270

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	61,138,816 - 61,139,019 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	63,316,988 - 63,317,190	NCBI	Rnor6.0
Rnor_5.0	17	65,084,948 - 65,085,150	UniSTS	Rnor5.0
RGSC_v3.4	17	71,931,713 - 71,931,915	UniSTS	RGSC3.4
Celera	17	59,441,507 - 59,441,709	UniSTS
Cytogenetic Map	17	q12.1	UniSTS

AA849380

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	61,182,962 - 61,183,117 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	63,270,247 - 63,270,401	NCBI	Rnor6.0
Rnor_5.0	17	65,041,298 - 65,041,452	UniSTS	Rnor5.0
RGSC_v3.4	17	71,975,713 - 71,975,867	UniSTS	RGSC3.4
Celera	17	59,397,403 - 59,397,557	UniSTS
RH 3.4 Map	17	586.2	UniSTS
Cytogenetic Map	17	q12.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000058548 ⟹ ENSRNOP00000055347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	65,830,022 - 65,908,676 (-)	Ensembl
mRatBN7.2 Ensembl	17	61,138,709 - 61,187,960 (-)	Ensembl
Rnor_6.0 Ensembl	17	63,265,444 - 63,313,864 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077471 ⟹ ENSRNOP00000073054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	65,830,022 - 65,908,676 (-)	Ensembl
mRatBN7.2 Ensembl	17	61,138,709 - 61,187,960 (-)	Ensembl
Rnor_6.0 Ensembl	17	63,265,407 - 63,314,019 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095591 ⟹ ENSRNOP00000091873

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	65,830,022 - 65,874,912 (-)	Ensembl
mRatBN7.2 Ensembl	17	61,138,709 - 61,184,498 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120050 ⟹ ENSRNOP00000089771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	65,830,022 - 65,908,676 (-)	Ensembl
mRatBN7.2 Ensembl	17	61,138,709 - 61,187,960 (-)	Ensembl

RefSeq Acc Id:

NM_001107361 ⟹ NP_001100831

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,022 - 65,908,676 (-)	NCBI
mRatBN7.2	17	61,138,663 - 61,217,318 (-)	NCBI
Dahl_SR_JrHsd	17	67,142,388 - 67,221,174 (-)	NCBI
Lyon_Normotensive	17	66,606,576 - 66,685,358 (-)	NCBI
Lyon_Hypertensive	17	64,210,879 - 64,289,661 (-)	NCBI
F344_StmMcwi	17	65,276,934 - 65,355,581 (-)	NCBI
Rnor_6.0	17	63,236,007 - 63,317,298 (+)	NCBI
Rnor_5.0	17	65,007,058 - 65,085,258 (+)	NCBI
RGSC_v3.4	17	71,931,605 - 72,010,103 (-)	RGD
Celera	17	59,363,334 - 59,441,817 (+)	RGD

Sequence:

show sequence

GGACTTCCGCAGGGCCCCGGAAGTGGGATCTGTGTGTTCTCATGCGAACGGGAAGGAGCGTTGG
GGATCTGGAGTCTCGAGGTTGAGACATTTTCGGGCCCGAAAAAGGAAGGATCAGCTGCTGTCGC
TGCCAAGCCCGCGCCCGCTCTTGTTCTTACAGTCTTTAAACTGTCTTCTGTGATATTCCCTGAG
CCTACGGTAGACAACTGTGGATGTCCCATTGATGACTAAGTGTGCAGCAGTCACTGTGATCTCT
GACCATTCGTCCTGAGTTTAGCATTATACTTTTCCAGTGGAGCCCATGACTTCTGATCAGGACG
CTAAAGTTGTGGCTGAACCGCAGGCACAGCGAGTCCAGGAGGGCAAGGACAGCTCTCATCTGAT
GAATGGTCCTATATCGCAAACCACTTCTCAAACAAGTTCCCTCCCAGCATTGACTCAGGTCCCA
ACAACTAAGGTTTCAGAGCTAAACCCTAATGCAAAAGTATGGGGGACTCATATGTTACATCTGG
AGGCAAGTAGTGCGGCTGTCGGTGTGAATGCCTCCTGGGAAGAGGCTCCCGGCCGTCCTACAGA
CTGCGACCAGCAGGGATCGGATGCCAATGGCGATGGCGACAAAAGCCGTGAGAATGCCGCGCTC
CCGGACGCACAGGAGGCAGAGCAGACAGACATGAGCACTCTGGCTCTAGACCATGCAGAATACG
AACCTCTGCCTGAGAACAGCGATACGGGAGGAAATGAGTCTCAACCAGAAAGCCAGGAAGACCC
TCGGGAAGTACTTAAAAAAACATTGGAATTCTGCTTATCTAGGGAGAATCTTGCTAGCGACATG
TACCTTATATCCCAGATGGACAGTGATCAATATGTGCCAATTACAACGGTGGCTAACCTTGACC
ACATCAAGAAGCTCAGTACTGATGTGGATTTGATTGTTGAGGTCCTGAGATCTTTACCTTTAGT
CCAAGTGGATGAGAAGGGAGAGAAAGTAAGGCCAAATCAAAACCGGTGCATAGTGATACTGCGT
GAGATATCTGAGTCCACCCCTGTGGAAGAAGTAGAAGCACTATTTAAAGGAGATAATTTACCAA
AATTTATAAACTGTGAATTTGCCTATAATGATAATTGGTTCATTACCTTTGAAACAGAAGCTGA
CGCACAGCAGGCTTACAAATACCTTCGAGAAGAAGTCAGAACTTTCCAAGGAAAGCCAATTAAG
GCACGGATAAAAGCAAAGGCGATAGCGATAAACACATTTTTGCCAAAGAATGGATTTAGACCTC
TGGACATGAACCTTTACACACAGCAGCGTTATGCTACATCGTTTTACTTACCTCCAGTGTACAG
TCCCCAGCAGCAGTTCCCTCTGTACAGCCTGATCGCCCCCCAGACATGGTCAACAACACACAGT
TATCTCGATCCACCCTTGGTAACTCCTTTTCCAAGTACTGGATTTATAAATGGGTTTACATCTC
CGACCTTCAAACCTGCAACGTCTCCCCTGACCTCGCTCAGACAATATCCTCCTAGAAGCAGGAA
TCCTAGTAAGTCTCATCTGCGCCATGCGATTCCTAGTACAGAGAGAGGGCCTGGGCTGCTAGAA
AGTCCTTCAATATTTAACTTCACTGCAGATCGATTAATTAATGGTGTCCGGAGCCCACAGACGA
GGCAAGCAGGGCAAACTAGAACACGAATACAAAACCCTTCAGCTTATGCCAAGAGAGAGATTGG
AACTGGGCGTGTGGAGCCAAGTAGTCTTGAGTCCTCTCCTGGTTTAGGGAGAGGAAGGAAAAAT
TCCTTTGGCTACCGGAAGAAAAGAGAAGAGAAGTTTACAAGCAGTCAGACGCAGTCTCCAACAC
CACCAAAGCCTCCATCACCAAGCTTCGAACTGGGGCTGTCCAACTTCCCCCCATTACCTGGAGC
TGCAGGCAATTTGAAGGCAGAGGACTTGTTTGAAAACAGGCTTTCCAGTTTGATCATAGGATCT
TCAAAAGAAAGAAGCCTCAGTACAGATGCAAGCACAAACACTGCTCCTGTAGTGGTGCCCAGAG
AGCCCTCCGTGCCAGCGCCCTGTGCTGTGTCCGCAGCGTTTGAACGTTCCCCTTCCCCGGCCCA
TTTACCTGAGGATCACAAGGTGGCAGAAAAGCAGAGGGAAGCTCACAGTGTGGACAGACTCCCT
TCAACCCCCACTGCGACTGCATGTAAATCGGTGCAGGTGAATGGAGCAGCAACAGAACTGAGAA
AGCCCAGTTATGCAGAGATCTGTCAAAGAACGAGTAAAGAGCCTCCTTCCTCCTCCCCATTGCA
ACCCCCAAAAGAACAAAAGCCAAACACTGTCGCCTGTGGGAAGGAGGAGAAGAAGCTTGCTGAG
CCTGCGGAGAGATACAGAGAGCCCCCTGCCCTCAAGTCTACTCCTGGAGTCCCCAAAGATCAGA
GGAGGCAGCCTGGGCGCCGACCGTCTCCTCCAGCTGCCGGGAAGCGCCTGAACAGGGAACAGAA
CACCCCTCCCAAGTCTCCTTAGTGAAAGCCGGATACCTGCCGGGGAGGGTGTGGAAGAGCTGTG
TTCACCGTGGACGAAGCTCTCCCGTACACTCAGACACTCAGTACGGAGTGAGCCGCTGGTTAGG
AGCTTGCAGCGTCTGTGGGGCCCGTGGGATACCTGCAAGTCACTTCCTTCTGTGAGTCGGATTT
TCCCCCTCTTGGAAAAAAAATCTATTTTTCAGGATTTAATTATATAATATAAACCTTATTTTAG
GTTGGTGCTTAACTGGAGGTGATTCAGAAGTCTGATGTTTTTCAGGATAGAAAATGTATTTATC
CTAACAAATGGATATTTTTATTAAGCCTCCACGTGGCTCTGAATGCAAGCTATAATGAGTTTTT
CTAAATTAAGGGAACTCTACTACTTTTTTTTTTAAATAGCTGGTCTGCAAGTGCACATTGGTAG
GGTGTCCCAGCAGATGGGTGGGGGCTGAGGGCACTGGCAGGGGCAGCCGTGGCCTCACAGAACA
AGGGACTGGCAATGTCAGGGCACTGACATACTGGCATAGGAGCTGTGTTTTCATCTAAACCATT
AGCTAACAGGTAACTCTAGCTTTAAAACAAGATACATATGTATATACAGTTCTTTTTGATCTAG
TGGACAGAATGAACCTGCAAAGAGCACCCTAGAAAGACCTGAAACCTTTGAGTTTTGATGTCCT
GCGAGCAAGTAACCAGCCTCTCACTCCAGTTCCAAGTGGCTACTGTGTAAAATAAATTCAAAGC
ACATTGTGAATAGAACCTAGATGAAATTAGAAACTGCTGCCCACTGACGTCAGACCATGAAGTT
GTACCATGATGTGTGTCCTGTGAGTGGGCTGCCTGGCTTCCATCCTCCAGTGCCTGCTCTGTCC
GTGTCCCCCACTCTCTCTCTGGAGAGTTGTGTCTTAGCCAGCTCTGTGTGGGTGTCTTCATGTA
CCTCTGCATCGGCCGGCACATGGATTAGAAGAACCTAGCCGTGAGAGAGTGGTGTTTGTGGGTC
TCCCCCCCCCCCTGGCTGGCGGAGGACAGAACCCTTGCTCCTTTTACCTCCAAGACGAGGGTCT
TGTTGATTCTTTCCAGAAGCGCTGCACTTCTGAAGAACGAGTGCAGTCAAGTTAGCAAGTTTAT
AATAAAGTTACAGATAAATTATTTTGTTTTAAAATGCCTAAAATTTTTCTTTAAGTATTCTAAG
CAGCAGACCTTAAAATATTTCCTGCTATATGTAACCATACAGCTAATTCCACAAAATGCTATTT
AACAAGACTGAAGGTTGTTTTGGTTTCTTTTTTCTTTTTATTTTCTAAGGAAAAAAAATGATTT
CCATCCAATATTTAAAGACTTGAATTTTATTTAAACTTGAAAATGACTTTGCCTTAACTTTTGT
ATAAGACAGCTTAGAGCTCACGGAGACCTGCCCCGGGTTGGCGGGAGTGGATCGGTTACTCATT
GCCATGCGGATCTCCTGGTGTTGGTTTTGCTGAGAGCGCATACTGTTGTACAAGAACCCAGTGG
TTTTGTAACAAACCTGCAGATCTTCAACAGTTGGTCTTTTTCAGATGTTGAGAACCCTGTAAGT
GCAAATGTCGCTACTGTGTTAACTCTGTGCACTTGGGAGTGTGCTCTGCCTGTACAGTGTAAAT
AATCAGAACATATGAGAAAGGTACCCTACAGAGAAGAATCTGATAAAAATTATTGATATATTAT
AAATGTTGCTGATGAGCTGGATGTGGATAAACTAAATGTTGTGGTTTGAGTATTATTTTAGTTT
GTTAAGGTTTTTCTTTTTCCTCTTATACTGGTGTGTTGAACTGACTTTGCCTCTTTGCTGCAAA
AGGGAAATGGGAAGTCTTATTAAAGCCTTTGGATGTTTTCATACTCTTAAAAGTATGTAAGTAC
ATACTGATCATATTTGATGTTTGAGGGTTTTGAAGAGAGTATAGAGAGCAGAGACTGGCAAGAT
CTTCCAATGAAAGTAAAAAACAGAAATGTGCTAATTAGAATTAAAACTTTGTGAAGTGATTTTT
TTTCCTCCCAGAGGCAAAGATGGCCTGATGCACATGACCATTTCCTTCAGAGCAACTGTCACTC
AGTTACATAGGAGCATACGCAGTGCTGATGTTTCAAACGCCTGTGAAAGGAACATAGGACGCAT
TTCCTTGTAGATGTCAGATCACTGACAAAAAAACAAAGAAGAAGAAGAAGAAAGGCTGGCCTCT
TGAACCCACACTAGCAGATACTGTCTGTCTGGAAAGGCGAGCCTGAGGCCTCAGGTCCTTCACA
TCACAGCCTTGCTGGAAGAGGGGCCAAATAATGGCAGCATCCCTTATCCCCAAAGATGCTCTCA
CAGATGATCTTTGATTTTCAATGAGGAGTCCTTTCCCCAAGGCTGAGCATTGCAGCAGGAAACC
TGTGTGGCAGAGCCAGCTGTAGGTGCTTGCTGTCTGCGGGCTGGAAGTGTAAGCTCAGTGGCTG
CACCCAAGGGCAGGTTTGCAGATGCACGAGGTTGGGACACTGTAATTACTGCTTGGCCAGTGAC
AGCCTGGCATCAGAAACTAAAGCCGTGCTCAGATGTGATTTTTATAGCACTCGTTTTCAGGAAG
CAAAGGTGATATGCCAAATAGCTGTGTAATGTCAAAACAGAGACTTCCTGTACACTTTGAGGTT
TTCCACTCAGAAAAAAATGGAAGTTATCAAAATAGGAAGCTGTTGAGGGCGCATGCAGACTCTT
GCTGTGTCACGTCCAGCAAGTGTGATCCGTGGTTTCCATAATCTATTTTCTAAGTTTACTCATT
CCTTTCAGTATCTCAAGGTATAGAATCGGAGATACCACAGTCACAAATGACATTTTAACTTGTA
AAATTGTGTGATGATGCTTAATTATCATAGGGAAATATGGACTAGGAATCTGGCCCCGCTTCAC
CAGACATGAATTTCAAGTGATTCCTCCTCGTAGTCAGTGTCATGATGTCTCTGTGAATCCCTCC
TGTCATTGCATCACTGGTTGCCACTAGTGGGTGGCAAAAAAATAAAAAGAAAAAAAAGGAAAAA
AAAGTCTTATATTGCTGTATTAGGGTTTCTGCAGTTGATATTGAAAAACTGGTCCAGTGTGTCA
CAGCAGGCGACTGATGGTGCATACCTGTCTTTGTGTCCCCTTCAGTGAGCTGTAGTTGTGGGTT
TGTGTGCTTTGTAGCCTGTCATGCGGAAAGCAACAGACAATCGAAGATTCCAGGAGCGCTAACA
GCCGCGGCGAGTCACAGACGGGATTGTACCATGGAAGCTTGCCTGAGGGTTTCTGTTTCCTTTC
CATAAGACTGGAATCAAGCTTACATGTAAACTATTGGGAATTTAAGTTTCCTTTTGTGTCATTT
TGTGTAAGACTGTCTAATTTGAAAAATGTAGGTTATGAAAAATAAAGATTTAGGCACTGTTCAA

hide sequence

RefSeq Acc Id:

XM_039095755 ⟹ XP_038951683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,191 (-)	NCBI

RefSeq Acc Id:

XM_039095756 ⟹ XP_038951684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,779 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,423 (-)	NCBI

RefSeq Acc Id:

XM_039095757 ⟹ XP_038951685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,191 (-)	NCBI

RefSeq Acc Id:

XM_039095758 ⟹ XP_038951686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,191 (-)	NCBI

RefSeq Acc Id:

XM_039095760 ⟹ XP_038951688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,191 (-)	NCBI

RefSeq Acc Id:

XM_039095761 ⟹ XP_038951689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,191 (-)	NCBI

RefSeq Acc Id:

XM_039095762 ⟹ XP_038951690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,191 (-)	NCBI

RefSeq Acc Id:

XM_039095763 ⟹ XP_038951691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,191 (-)	NCBI

RefSeq Acc Id:

XM_039095764 ⟹ XP_038951692

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI
mRatBN7.2	17	61,138,709 - 61,217,191 (-)	NCBI

RefSeq Acc Id:

XM_063276484 ⟹ XP_063132554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,885 (-)	NCBI

RefSeq Acc Id:

XM_063276485 ⟹ XP_063132555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,920 (-)	NCBI

RefSeq Acc Id:

XM_063276486 ⟹ XP_063132556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI

RefSeq Acc Id:

XM_063276487 ⟹ XP_063132557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI

RefSeq Acc Id:

XM_063276488 ⟹ XP_063132558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI

RefSeq Acc Id:

XM_063276489 ⟹ XP_063132559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,865 (-)	NCBI

RefSeq Acc Id:

XM_063276490 ⟹ XP_063132560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,830,068 - 65,908,555 (-)	NCBI

RefSeq Acc Id:

XR_010058882

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	65,813,125 - 65,908,555 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100831	(Get FASTA)	NCBI Sequence Viewer
	XP_038951683	(Get FASTA)	NCBI Sequence Viewer
	XP_038951684	(Get FASTA)	NCBI Sequence Viewer
	XP_038951685	(Get FASTA)	NCBI Sequence Viewer
	XP_038951686	(Get FASTA)	NCBI Sequence Viewer
	XP_038951688	(Get FASTA)	NCBI Sequence Viewer
	XP_038951689	(Get FASTA)	NCBI Sequence Viewer
	XP_038951690	(Get FASTA)	NCBI Sequence Viewer
	XP_038951691	(Get FASTA)	NCBI Sequence Viewer
	XP_038951692	(Get FASTA)	NCBI Sequence Viewer
	XP_063132554	(Get FASTA)	NCBI Sequence Viewer
	XP_063132555	(Get FASTA)	NCBI Sequence Viewer
	XP_063132556	(Get FASTA)	NCBI Sequence Viewer
	XP_063132557	(Get FASTA)	NCBI Sequence Viewer
	XP_063132558	(Get FASTA)	NCBI Sequence Viewer
	XP_063132559	(Get FASTA)	NCBI Sequence Viewer
	XP_063132560	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM06963	(Get FASTA)	NCBI Sequence Viewer
	EDM06964	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000055347
	ENSRNOP00000055347.4
	ENSRNOP00000073054
	ENSRNOP00000073054.2
	ENSRNOP00000089771
	ENSRNOP00000089771.1
	ENSRNOP00000091873.1

RefSeq Acc Id:

NP_001100831 ⟸ NM_001107361

- UniProtKB:

A6KN12 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSDQDAKVVAEPQAQRVQEGKDSSHLMNGPISQTTSQTSSLPALTQVPTTKVSELNPNAKVWG
THMLHLEASSAAVGVNASWEEAPGRPTDCDQQGSDANGDGDKSRENAALPDAQEAEQTDMSTLA
LDHAEYEPLPENSDTGGNESQPESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPIT
TVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALF
KGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVRTFQGKPIKARIKAKAIAINTFLP
KNGFRPLDMNLYTQQRYATSFYLPPVYSPQQQFPLYSLIAPQTWSTTHSYLDPPLVTPFPSTGF
INGFTSPTFKPATSPLTSLRQYPPRSRNPSKSHLRHAIPSTERGPGLLESPSIFNFTADRLING
VRSPQTRQAGQTRTRIQNPSAYAKREIGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSS
QTQSPTPPKPPSPSFELGLSNFPPLPGAAGNLKAEDLFENRLSSLIIGSSKERSLSTDASTNTA
PVVVPREPSVPAPCAVSAAFERSPSPAHLPEDHKVAEKQREAHSVDRLPSTPTATACKSVQVNG
AATELRKPSYAEICQRTSKEPPSSSPLQPPKEQKPNTVACGKEEKKLAEPAERYREPPALKSTP
GVPKDQRRQPGRRPSPPAAGKRLNREQNTPPKSP

hide sequence

Ensembl Acc Id:

ENSRNOP00000073054 ⟸ ENSRNOT00000077471

Ensembl Acc Id:

ENSRNOP00000055347 ⟸ ENSRNOT00000058548

RefSeq Acc Id:	XP_038951684 ⟸ XM_039095756
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951692 ⟸ XM_039095764
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038951686 ⟸ XM_039095758
- Peptide Label:	isoform X3
- UniProtKB:	D3ZF45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951691 ⟸ XM_039095763
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038951690 ⟸ XM_039095762
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038951689 ⟸ XM_039095761
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038951688 ⟸ XM_039095760
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038951685 ⟸ XM_039095757
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K4I2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951683 ⟸ XM_039095755
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000091873 ⟸ ENSRNOT00000095591

Ensembl Acc Id:

ENSRNOP00000089771 ⟸ ENSRNOT00000120050

RefSeq Acc Id:	XP_063132555 ⟸ XM_063276485
- Peptide Label:	isoform X4
- UniProtKB:	A6KN12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132554 ⟸ XM_063276484
- Peptide Label:	isoform X3
- UniProtKB:	D3ZF45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132559 ⟸ XM_063276489
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063132560 ⟸ XM_063276490
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063132558 ⟸ XM_063276488
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063132557 ⟸ XM_063276487
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6A8U8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132556 ⟸ XM_063276486
- Peptide Label:	isoform X6

Protein Domains

HTH La-type RNA-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZF45-F1-model_v2	AlphaFold	D3ZF45	1-737	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310713	AgrOrtholog
BioCyc Gene	G2FUF-8902	BioCyc
Ensembl Genes	ENSRNOG00000015888	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000058548	ENTREZGENE
	ENSRNOT00000058548.6	UniProtKB/TrEMBL
	ENSRNOT00000077471	ENTREZGENE
	ENSRNOT00000077471.3	UniProtKB/TrEMBL
	ENSRNOT00000095591.2	UniProtKB/TrEMBL
	ENSRNOT00000120050	ENTREZGENE
	ENSRNOT00000120050.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	La_dom_prot	UniProtKB/TrEMBL
	LARP5_RRM	UniProtKB/TrEMBL
	Lupus_La_RNA-bd	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:307070	UniProtKB/TrEMBL
NCBI Gene	307070	ENTREZGENE
PANTHER	LA-RELATED PROTEIN 4B	UniProtKB/TrEMBL
	PTHR22792	UniProtKB/TrEMBL
Pfam	PF05383	UniProtKB/TrEMBL
PhenoGen	Larp4b	PhenoGen
PROSITE	HTH_LA	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015888	RatGTEx
SMART	SM00715	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
UniProt	A0A0G2K4I2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8U8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AUI4_RAT	UniProtKB/TrEMBL
	A6KN12	ENTREZGENE, UniProtKB/TrEMBL
	D3ZF45	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-09-13	Larp4b	La ribonucleoprotein 4B	Larp4b	La ribonucleoprotein domain family, member 4B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-01-17	Larp4b	La ribonucleoprotein domain family, member 4B	Larp5	La ribonucleoprotein domain family, member 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Larp5	La ribonucleoprotein domain family, member 5	Larp5_predicted	La ribonucleoprotein domain family, member 5 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Larp5_predicted	La ribonucleoprotein domain family, member 5 (predicted)	RGD1310713_predicted	similar to expressed sequence AI256361 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1310713_predicted	similar to expressed sequence AI256361 (predicted)	LOC307070_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC307070_predicted	similar to expressed sequence AI256361 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD