Cbll1 (Cbl proto-oncogene like 1) - Rat Genome Database

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Gene: Cbll1 (Cbl proto-oncogene like 1) Rattus norvegicus
Analyze
Symbol: Cbll1
Name: Cbl proto-oncogene like 1
RGD ID: 1310703
Description: Predicted to enable identical protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including cell-cell adhesion; mRNA processing; and protein ubiquitination. Predicted to act upstream of or within negative regulation of cell adhesion; positive regulation of cell migration; and positive regulation of endocytosis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Orthologous to several human genes including CBLL1 (Cbl proto-oncogene like 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1; Casitas B-lineage lymphoma-like 1; Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1; Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase; E3 ubiquitin-protein ligase Hakai; LOC314028
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,798,712 - 53,812,890 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl653,798,712 - 53,813,880 (-)EnsemblGRCr8
mRatBN7.2648,071,190 - 48,086,174 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,071,190 - 48,086,444 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx648,377,047 - 48,391,278 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,691,968 - 48,706,199 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,132,377 - 48,146,508 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,772,718 - 50,786,861 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,772,829 - 50,786,967 (-)Ensemblrn6Rnor6.0
Rnor_5.0659,443,728 - 59,457,594 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4649,352,961 - 49,366,947 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera647,273,551 - 47,287,651 (-)NCBICelera
RGSC_v3.1649,358,190 - 49,377,622 (-)NCBI
Cytogenetic Map6q16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
leflunomide  (ISO)
methamphetamine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenytoin  (EXP)
potassium chromate  (ISO)
prednisolone  (ISO)
rac-lactic acid  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium dodecyl sulfate  (ISO)
sodium lactate  (ISO)
sulfadimethoxine  (EXP)
tacrolimus hydrate  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triadimefon  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11836526   PMID:22252131   PMID:29507755   PMID:29547716  


Genomics

Comparative Map Data
Cbll1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,798,712 - 53,812,890 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl653,798,712 - 53,813,880 (-)EnsemblGRCr8
mRatBN7.2648,071,190 - 48,086,174 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,071,190 - 48,086,444 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx648,377,047 - 48,391,278 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,691,968 - 48,706,199 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,132,377 - 48,146,508 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,772,718 - 50,786,861 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,772,829 - 50,786,967 (-)Ensemblrn6Rnor6.0
Rnor_5.0659,443,728 - 59,457,594 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4649,352,961 - 49,366,947 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera647,273,551 - 47,287,651 (-)NCBICelera
RGSC_v3.1649,358,190 - 49,377,622 (-)NCBI
Cytogenetic Map6q16NCBI
CBLL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,744,142 - 107,761,667 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,743,073 - 107,761,667 (+)Ensemblhg38GRCh38
GRCh377107,384,587 - 107,402,112 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,171,822 - 107,187,265 (+)NCBIBuild 36Build 36hg18NCBI36
Build 347106,978,536 - 106,993,975NCBI
Celera7102,191,387 - 102,209,180 (+)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,746,862 - 101,764,652 (+)NCBIHuRef
CHM1_17107,318,249 - 107,336,045 (+)NCBICHM1_1
T2T-CHM13v2.07109,062,577 - 109,080,102 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,745,399 - 106,763,197 (+)NCBI
Cbll1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,534,828 - 31,550,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,534,828 - 31,549,615 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381231,484,829 - 31,500,676 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,484,829 - 31,499,616 (-)Ensemblmm10GRCm38
MGSCv371232,171,761 - 32,184,405 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361232,072,860 - 32,085,504 (-)NCBIMGSCv36mm8
Celera1232,936,161 - 32,949,271 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.49NCBI
Cbll1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,078,452 - 12,093,641 (+)Ensembl
ChiLan1.0NW_00495541012,078,448 - 12,093,641 (+)NCBIChiLan1.0ChiLan1.0
CBLL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,589,951 - 144,608,045 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17192,859,919 - 192,877,885 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,725,818 - 99,743,915 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,448,099 - 112,466,261 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,448,102 - 112,467,062 (+)EnsemblpanPan2panpan1.1
CBLL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,848,149 - 12,869,933 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,851,360 - 12,868,850 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1812,493,139 - 12,513,943 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01813,119,598 - 13,141,065 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,119,198 - 13,140,769 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,936,552 - 12,958,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,856,810 - 12,877,401 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,085,816 - 13,106,894 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cbll1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,258,511 - 55,278,276 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,380,937 - 16,402,345 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,382,280 - 16,401,997 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBLL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,456,603 - 107,474,611 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19107,456,261 - 107,474,615 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,217,611 - 118,233,730 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBLL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,659,559 - 76,678,301 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,661,324 - 76,679,418 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604227,185,139 - 27,204,277 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbll1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,013,236 - 22,028,622 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473922,013,301 - 22,028,515 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cbll1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1744,859,660 - 44,873,924 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cbll1
37 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:165
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000009566
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat

Markers in Region
STS-N34389  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,071,329 - 48,071,450 (+)MAPPERmRatBN7.2
Rnor_6.0650,772,858 - 50,772,978NCBIRnor6.0
Rnor_5.0659,443,868 - 59,443,988UniSTSRnor5.0
RGSC_v3.4649,353,101 - 49,353,221UniSTSRGSC3.4
Celera647,273,691 - 47,273,811UniSTS
Cytogenetic Map6q16UniSTS
RH142339  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,071,401 - 48,071,598 (+)MAPPERmRatBN7.2
Rnor_6.0650,772,930 - 50,773,126NCBIRnor6.0
Rnor_5.0659,443,940 - 59,444,136UniSTSRnor5.0
RGSC_v3.4649,353,173 - 49,353,369UniSTSRGSC3.4
Celera647,273,763 - 47,273,959UniSTS
RH 3.4 Map6293.7UniSTS
Cytogenetic Map6q16UniSTS
AI467391  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,073,485 - 48,073,624 (+)MAPPERmRatBN7.2
Rnor_6.0650,775,014 - 50,775,152NCBIRnor6.0
Rnor_5.0659,446,024 - 59,446,162UniSTSRnor5.0
RGSC_v3.4649,355,257 - 49,355,395UniSTSRGSC3.4
Celera647,275,847 - 47,275,985UniSTS
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000009566   ⟹   ENSRNOP00000009565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl653,798,820 - 53,813,880 (-)Ensembl
mRatBN7.2 Ensembl648,071,190 - 48,086,444 (-)Ensembl
Rnor_6.0 Ensembl650,772,829 - 50,786,967 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102801   ⟹   ENSRNOP00000094608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl653,798,712 - 53,812,845 (-)Ensembl
mRatBN7.2 Ensembl648,071,190 - 48,085,435 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112474   ⟹   ENSRNOP00000084161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl653,801,208 - 53,812,845 (-)Ensembl
mRatBN7.2 Ensembl648,073,686 - 48,085,571 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000141682   ⟹   ENSRNOP00000100923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl653,798,712 - 53,810,821 (-)Ensembl
RefSeq Acc Id: NM_001108018   ⟹   NP_001101488
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,712 - 53,812,845 (-)NCBI
mRatBN7.2648,071,190 - 48,085,323 (-)NCBI
Rnor_6.0650,772,718 - 50,786,851 (-)NCBI
Rnor_5.0659,443,728 - 59,457,594 (-)NCBI
RGSC_v3.4649,352,961 - 49,366,947 (-)RGD
Celera647,273,551 - 47,287,651 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399563   ⟹   NP_001386492
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,812,785 (-)NCBI
mRatBN7.2648,071,298 - 48,085,263 (-)NCBI
RefSeq Acc Id: NM_001399564   ⟹   NP_001386493
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,812,785 (-)NCBI
mRatBN7.2648,071,298 - 48,085,263 (-)NCBI
RefSeq Acc Id: XM_006239988   ⟹   XP_006240050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,812,890 (-)NCBI
mRatBN7.2648,071,298 - 48,085,387 (-)NCBI
Rnor_6.0650,773,197 - 50,786,861 (-)NCBI
Rnor_5.0659,443,728 - 59,457,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112212   ⟹   XP_038968140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,725 (-)NCBI
mRatBN7.2648,071,298 - 48,084,218 (-)NCBI
RefSeq Acc Id: XM_039112213   ⟹   XP_038968141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,726 (-)NCBI
mRatBN7.2648,071,298 - 48,084,220 (-)NCBI
RefSeq Acc Id: XM_039112214   ⟹   XP_038968142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,864 (-)NCBI
mRatBN7.2648,071,298 - 48,084,219 (-)NCBI
RefSeq Acc Id: XM_039112216   ⟹   XP_038968144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,727 (-)NCBI
mRatBN7.2648,071,298 - 48,084,220 (-)NCBI
RefSeq Acc Id: XM_039112218   ⟹   XP_038968146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,962 (-)NCBI
mRatBN7.2648,071,298 - 48,085,186 (-)NCBI
RefSeq Acc Id: XM_063261897   ⟹   XP_063117967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,810 (-)NCBI
RefSeq Acc Id: XM_063261898   ⟹   XP_063117968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,962 (-)NCBI
RefSeq Acc Id: XM_063261899   ⟹   XP_063117969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,962 (-)NCBI
RefSeq Acc Id: XM_063261900   ⟹   XP_063117970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,798,820 - 53,811,962 (-)NCBI
RefSeq Acc Id: NP_001101488   ⟸   NM_001108018
- Peptide Label: isoform 3
- UniProtKB: A6HB48 (UniProtKB/TrEMBL),   D3ZS02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240050   ⟸   XM_006239988
- Peptide Label: isoform X5
- UniProtKB: D3ZS02 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009565   ⟸   ENSRNOT00000009566
RefSeq Acc Id: XP_038968146   ⟸   XM_039112218
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968144   ⟸   XM_039112216
- Peptide Label: isoform X3
- UniProtKB: D3ZS02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968141   ⟸   XM_039112213
- Peptide Label: isoform X2
- UniProtKB: D3ZS02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968142   ⟸   XM_039112214
- Peptide Label: isoform X4
- UniProtKB: D3ZS02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968140   ⟸   XM_039112212
- Peptide Label: isoform X1
- UniProtKB: D3ZS02 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094608   ⟸   ENSRNOT00000102801
Ensembl Acc Id: ENSRNOP00000084161   ⟸   ENSRNOT00000112474
RefSeq Acc Id: NP_001386493   ⟸   NM_001399564
- Peptide Label: isoform 2
- UniProtKB: D3ZS02 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386492   ⟸   NM_001399563
- Peptide Label: isoform 1
- UniProtKB: D3ZS02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117970   ⟸   XM_063261900
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117969   ⟸   XM_063261899
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117968   ⟸   XM_063261898
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117967   ⟸   XM_063261897
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AJZ8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100923   ⟸   ENSRNOT00000141682
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZS02-F1-model_v2 AlphaFold D3ZS02 1-491 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694544
Promoter ID:EPDNEW_R5068
Type:single initiation site
Name:Cbll1_1
Description:Cbl proto-oncogene like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0650,786,788 - 50,786,848EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310703 AgrOrtholog
BioCyc Gene G2FUF-37919 BioCyc
Ensembl Genes ENSRNOG00000007253 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009566 ENTREZGENE
  ENSRNOT00000009566.6 UniProtKB/TrEMBL
  ENSRNOT00000102801 ENTREZGENE
  ENSRNOT00000102801.2 UniProtKB/TrEMBL
  ENSRNOT00000112474.2 UniProtKB/TrEMBL
  ENSRNOT00000141682 ENTREZGENE
  ENSRNOT00000141682.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  6.10.140.2210 UniProtKB/TrEMBL
InterPro HAKAI-like_RING-HC UniProtKB/TrEMBL
  HAKAI/CBLL2 UniProtKB/TrEMBL
  Znf_Hakai UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene 314028 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI UniProtKB/TrEMBL
  PTHR13480 UniProtKB/TrEMBL
Pfam zf_Hakai UniProtKB/TrEMBL
PhenoGen Cbll1 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007253 RatGTEx
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8I6A0P9_RAT UniProtKB/TrEMBL
  A0A8I6AJZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LJ47_RAT UniProtKB/TrEMBL
  A6HB48 ENTREZGENE, UniProtKB/TrEMBL
  D3ZS02 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-05 Cbll1  Cbl proto-oncogene like 1  Cbll1  Casitas B-lineage lymphoma-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-05-04 Cbll1  Casitas B-lineage lymphoma-like 1  Cbll1  Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-18 Cbll1  Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase  Cbll1  Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-13 Cbll1  Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1  Cbll1  Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Cbll1  Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1  Cbll1  Casitas B-lineage lymphoma-like 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cbll1  Casitas B-lineage lymphoma-like 1   Cbll1_predicted  Casitas B-lineage lymphoma-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cbll1_predicted  Casitas B-lineage lymphoma-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED