Galnt2 (polypeptide N-acetylgalactosaminyltransferase 2) - Rat Genome Database

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Gene: Galnt2 (polypeptide N-acetylgalactosaminyltransferase 2) Rattus norvegicus
Analyze
Symbol: Galnt2
Name: polypeptide N-acetylgalactosaminyltransferase 2
RGD ID: 1310692
Description: Predicted to enable manganese ion binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in positive regulation of immunoglobulin production; protein O-linked glycosylation via N-acetyl-galactosamine; and protein maturation. Predicted to be located in Golgi stack and perinuclear region of cytoplasm. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIt. Orthologous to human GALNT2 (polypeptide N-acetylgalactosaminyltransferase 2); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292090; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,110,657 - 69,222,237 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1969,110,657 - 69,222,237 (+)EnsemblGRCr8
mRatBN7.21952,213,226 - 52,324,816 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,213,351 - 52,324,813 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1958,998,617 - 59,110,078 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,846,711 - 59,958,202 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,925,059 - 62,036,532 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,043,858 - 57,115,123 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,047,830 - 57,115,132 (+)Ensemblrn6Rnor6.0
Rnor_5.01967,730,567 - 67,824,804 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41954,479,961 - 54,529,837 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1951,646,020 - 51,695,948 (+)NCBICelera
RGSC_v3.11954,403,248 - 54,532,495 (+)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-D  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-bromohexadecanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
Azoxymethane  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
ciglitazone  (ISO)
ciguatoxin CTX1B  (ISO)
clofibrate  (ISO)
cobalt atom  (EXP)
cobalt dichloride  (EXP)
Cuprizon  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dieldrin  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fenthion  (ISO)
flutamide  (EXP,ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fructose  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glucose  (ISO)
haloperidol  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
N-nitrosodiethylamine  (ISO)
naled  (ISO)
nickel atom  (EXP,ISO)
nickel dichloride  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
tungsten  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9295285   PMID:9852147   PMID:12438318   PMID:12477932   PMID:12506059   PMID:16434399   PMID:18562306   PMID:19460755   PMID:19946888   PMID:23376485   PMID:27508872   PMID:28167537  
PMID:33152927  


Genomics

Comparative Map Data
Galnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,110,657 - 69,222,237 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1969,110,657 - 69,222,237 (+)EnsemblGRCr8
mRatBN7.21952,213,226 - 52,324,816 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,213,351 - 52,324,813 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1958,998,617 - 59,110,078 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,846,711 - 59,958,202 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,925,059 - 62,036,532 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,043,858 - 57,115,123 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,047,830 - 57,115,132 (+)Ensemblrn6Rnor6.0
Rnor_5.01967,730,567 - 67,824,804 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41954,479,961 - 54,529,837 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1951,646,020 - 51,695,948 (+)NCBICelera
RGSC_v3.11954,403,248 - 54,532,495 (+)NCBI
Cytogenetic Map19q12NCBI
GALNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,057,789 - 230,282,122 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,057,990 - 230,282,128 (+)Ensemblhg38GRCh38
GRCh371230,193,536 - 230,417,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361228,269,651 - 228,484,569 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341226,509,762 - 226,724,681NCBI
Celera1203,468,796 - 203,683,606 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1200,802,622 - 200,906,230 (+)NCBIHuRef
CHM1_11231,475,550 - 231,690,433 (+)NCBICHM1_1
T2T-CHM13v2.01229,437,364 - 229,661,641 (+)NCBIT2T-CHM13v2.0
Galnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,958,133 - 125,072,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,958,130 - 125,072,463 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388124,231,394 - 124,345,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,231,391 - 124,345,724 (+)Ensemblmm10GRCm38
GRCm38.p6 Ensembl8119,910,841 - 124,345,722 (+)Ensemblmm10GRCm38
MGSCv378126,755,294 - 126,869,622 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368127,117,484 - 127,231,812 (+)NCBIMGSCv36mm8
Celera8128,510,317 - 128,631,122 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.52NCBI
Galnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554928,103,140 - 8,245,143 (-)Ensembl
ChiLan1.0NW_0049554928,104,334 - 8,245,143 (-)NCBIChiLan1.0ChiLan1.0
GALNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,926,270 - 19,141,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,118,382 - 19,333,822 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01205,615,072 - 205,830,399 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,755,425 - 210,859,867 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,750,698 - 210,859,867 (+)EnsemblpanPan2panpan1.1
GALNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,055,753 - 9,243,741 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,977,509 - 9,281,048 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha49,047,537 - 9,238,587 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.049,079,878 - 9,271,142 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl49,079,878 - 9,271,118 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.149,090,715 - 9,281,701 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.049,205,484 - 9,396,350 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.049,433,272 - 9,624,403 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Galnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,730,510 - 43,824,988 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648419,893,513 - 19,990,215 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648419,894,682 - 19,990,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,961,259 - 60,141,261 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11459,961,255 - 60,141,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21464,772,924 - 64,952,935 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12567,324,572 - 67,543,035 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2567,347,697 - 67,543,039 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605569,218,260 - 69,437,159 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,079,648 - 19,221,562 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477519,080,035 - 19,221,509 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Galnt2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11743,767,450 - 43,879,881 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:605
Count of miRNA genes:255
Interacting mature miRNAs:320
Transcripts:ENSRNOT00000065431
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat

Markers in Region
AI029641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,324,595 - 52,324,782 (+)MAPPERmRatBN7.2
Rnor_6.01957,114,903 - 57,115,089NCBIRnor6.0
Rnor_5.01967,824,584 - 67,824,770UniSTSRnor5.0
RGSC_v3.41954,529,620 - 54,529,806UniSTSRGSC3.4
Celera1951,695,731 - 51,695,917UniSTS
RH 3.4 Map19723.2UniSTS
Cytogenetic Map19q12UniSTS
BI281562  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81969,220,248 - 69,220,451 (+)Marker Load Pipeline
mRatBN7.21952,322,827 - 52,323,030 (+)MAPPERmRatBN7.2
Rnor_6.01957,113,135 - 57,113,337NCBIRnor6.0
Rnor_5.01967,822,816 - 67,823,018UniSTSRnor5.0
RGSC_v3.41954,527,852 - 54,528,054UniSTSRGSC3.4
Celera1951,693,963 - 51,694,165UniSTS
RH 3.4 Map19729.9UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000065431   ⟹   ENSRNOP00000062956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,110,682 - 69,222,237 (+)Ensembl
mRatBN7.2 Ensembl1952,274,949 - 52,324,813 (+)Ensembl
Rnor_6.0 Ensembl1957,064,908 - 57,115,120 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080860   ⟹   ENSRNOP00000068936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,155,226 - 69,222,237 (+)Ensembl
mRatBN7.2 Ensembl1952,257,920 - 52,324,812 (+)Ensembl
Rnor_6.0 Ensembl1957,047,830 - 57,115,132 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111252   ⟹   ENSRNOP00000076466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,213,351 - 52,324,812 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114332   ⟹   ENSRNOP00000096847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,151,498 - 69,222,237 (+)Ensembl
mRatBN7.2 Ensembl1952,254,045 - 52,324,812 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114541   ⟹   ENSRNOP00000093650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,171,390 - 69,222,237 (+)Ensembl
mRatBN7.2 Ensembl1952,273,967 - 52,324,812 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117556   ⟹   ENSRNOP00000087187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,110,657 - 69,222,237 (+)Ensembl
mRatBN7.2 Ensembl1952,282,830 - 52,324,813 (+)Ensembl
RefSeq Acc Id: NM_001106196   ⟹   NP_001099666
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,110,657 - 69,222,237 (+)NCBI
mRatBN7.21952,213,226 - 52,324,816 (+)NCBI
Rnor_6.01957,064,908 - 57,115,120 (+)NCBI
Rnor_5.01967,730,567 - 67,824,804 (+)NCBI
RGSC_v3.41954,479,961 - 54,529,837 (+)RGD
Celera1951,646,020 - 51,695,948 (+)RGD
Sequence:
RefSeq Acc Id: XM_039097657   ⟹   XP_038953585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,171,938 - 69,222,237 (+)NCBI
mRatBN7.21952,274,515 - 52,324,816 (+)NCBI
RefSeq Acc Id: XM_039097658   ⟹   XP_038953586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,128,110 - 69,222,237 (+)NCBI
mRatBN7.21952,230,783 - 52,324,816 (+)NCBI
RefSeq Acc Id: NP_001099666   ⟸   NM_001106196
- Peptide Label: precursor
- UniProtKB: B5DF50 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068936   ⟸   ENSRNOT00000080860
Ensembl Acc Id: ENSRNOP00000062956   ⟸   ENSRNOT00000065431
RefSeq Acc Id: XP_038953586   ⟸   XM_039097658
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JU25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953585   ⟸   XM_039097657
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JU25 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000087187   ⟸   ENSRNOT00000117556
Ensembl Acc Id: ENSRNOP00000093650   ⟸   ENSRNOT00000114541
Ensembl Acc Id: ENSRNOP00000076466   ⟸   ENSRNOT00000111252
Ensembl Acc Id: ENSRNOP00000096847   ⟸   ENSRNOT00000114332
Protein Domains
Ricin B lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JU25-F1-model_v2 AlphaFold A0A0G2JU25 1-542 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310692 AgrOrtholog
BioCyc Gene G2FUF-5250 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
  PWY-7435 [mucin core 3 and core 4 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
  PWY-7435 BioCyc
Ensembl Genes ENSRNOG00000019143 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065431 ENTREZGENE
  ENSRNOT00000065431.3 UniProtKB/TrEMBL
  ENSRNOT00000080860 ENTREZGENE
  ENSRNOT00000080860.3 UniProtKB/TrEMBL
  ENSRNOT00000114332.2 UniProtKB/TrEMBL
  ENSRNOT00000114541.2 UniProtKB/TrEMBL
  ENSRNOT00000117556.2 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
  Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report rno:292090 UniProtKB/TrEMBL
NCBI Gene 292090 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PhenoGen Galnt2 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019143 RatGTEx
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP RicinB_like UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0A0G2JU25 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5D7_RAT UniProtKB/TrEMBL
  A0A8I6AKA3_RAT UniProtKB/TrEMBL
  A0A8I6AU26_RAT UniProtKB/TrEMBL
  A6KJ04_RAT UniProtKB/TrEMBL
  A6KJ05_RAT UniProtKB/TrEMBL
  B5DF50 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFD2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-21 Galnt2  polypeptide N-acetylgalactosaminyltransferase 2  Galnt2  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-17 Galnt2  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)  Galnt2  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Galnt2  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2   Galnt2_predicted  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Galnt2_predicted  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED