Zcchc2 (zinc finger CCHC-type containing 2) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Zcchc2 (zinc finger CCHC-type containing 2) Rattus norvegicus
Analyze
Symbol: Zcchc2
Name: zinc finger CCHC-type containing 2
RGD ID: 1310626
Description: Predicted to enable nucleic acid binding activity; phosphatidylinositol binding activity; and zinc ion binding activity. Orthologous to human ZCCHC2 (zinc finger CCHC-type containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304695; MGC112793; Tnfrsf11a; tumor necrosis factor receptor superfamily, member 11a; zinc finger CCHC domain-containing protein 2; zinc finger, CCHC domain containing 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81322,621,275 - 22,708,232 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1322,634,171 - 22,708,464 (+)EnsemblGRCr8
mRatBN7.21322,118,677 - 22,193,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1322,119,568 - 22,166,373 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1322,439,568 - 22,486,371 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01323,724,356 - 23,771,159 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01322,408,254 - 22,455,061 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01325,961,762 - 26,052,472 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,966,428 - 26,013,338 (+)Ensemblrn6Rnor6.0
Rnor_5.01331,122,293 - 31,210,284 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41312,148,072 - 12,196,570 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1321,988,903 - 22,034,139 (+)NCBICelera
RGSC_v3.11312,148,071 - 12,196,570 (+)NCBI
Cytogenetic Map13p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
dichloromethane  (ISO)
dimethylarsinous acid  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethyl methanesulfonate  (ISO)
ethylbenzene  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
inulin  (ISO)
lead diacetate  (ISO)
methyl methanesulfonate  (ISO)
o-xylene  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
succimer  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
trichloroethene  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Zcchc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81322,621,275 - 22,708,232 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1322,634,171 - 22,708,464 (+)EnsemblGRCr8
mRatBN7.21322,118,677 - 22,193,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1322,119,568 - 22,166,373 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1322,439,568 - 22,486,371 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01323,724,356 - 23,771,159 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01322,408,254 - 22,455,061 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01325,961,762 - 26,052,472 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,966,428 - 26,013,338 (+)Ensemblrn6Rnor6.0
Rnor_5.01331,122,293 - 31,210,284 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41312,148,072 - 12,196,570 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1321,988,903 - 22,034,139 (+)NCBICelera
RGSC_v3.11312,148,071 - 12,196,570 (+)NCBI
Cytogenetic Map13p11NCBI
ZCCHC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381862,523,025 - 62,586,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1862,523,025 - 62,587,709 (+)Ensemblhg38GRCh38
GRCh371860,190,258 - 60,253,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361858,357,894 - 58,396,798 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341858,357,893 - 58,396,796NCBI
Celera1856,910,014 - 56,965,120 (+)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1856,901,978 - 56,956,933 (+)NCBIHuRef
CHM1_11860,186,189 - 60,241,233 (+)NCBICHM1_1
T2T-CHM13v2.01862,725,900 - 62,789,604 (+)NCBIT2T-CHM13v2.0
Zcchc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391105,916,929 - 105,961,807 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1105,918,136 - 105,961,804 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381105,990,390 - 106,034,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1105,990,406 - 106,034,074 (+)Ensemblmm10GRCm38
MGSCv371107,886,983 - 107,930,654 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361107,817,953 - 107,861,621 (+)NCBIMGSCv36mm8
Celera1108,839,603 - 108,883,221 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.76NCBI
Zcchc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540246,426,432 - 46,464,063 (+)Ensembl
ChiLan1.0NW_00495540246,426,432 - 46,466,064 (+)NCBIChiLan1.0ChiLan1.0
ZCCHC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21780,044,446 - 80,107,909 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11865,737,056 - 65,800,519 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01855,893,099 - 55,948,648 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11859,210,876 - 59,265,634 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1859,209,993 - 59,265,634 (+)EnsemblpanPan2panpan1.1
ZCCHC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,335,727 - 14,393,157 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,337,065 - 14,393,158 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha115,297,086 - 15,360,133 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0114,190,236 - 14,253,286 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl114,191,690 - 14,254,282 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1114,231,483 - 14,289,704 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0114,159,498 - 14,222,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0114,410,914 - 14,469,185 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zcchc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494427,546,474 - 27,605,146 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364972,787,525 - 2,844,187 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364972,785,508 - 2,844,181 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1158,964,819 - 159,022,271 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11158,964,816 - 159,022,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,374,309 - 176,412,878 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11817,186,456 - 17,244,639 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1817,177,964 - 17,244,574 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660608,438,146 - 8,498,050 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247928,239,931 - 8,298,508 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zcchc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11089,708,303 - 89,753,002 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zcchc2
622 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:563
Count of miRNA genes:266
Interacting mature miRNAs:336
Transcripts:ENSRNOT00000003870, ENSRNOT00000061814
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134785618Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131228551734884386Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13308875548088755Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13600200837088115Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
2303031Bp326Blood pressure QTL 326arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131228551723516549Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13143736554Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131228551734884386Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13600200847359539Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13134785618Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
RH137338  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21322,118,837 - 22,119,034 (+)MAPPERmRatBN7.2
Rnor_6.01325,965,698 - 25,965,894NCBIRnor6.0
Rnor_5.01331,126,197 - 31,126,393UniSTSRnor5.0
RGSC_v3.41312,147,342 - 12,147,538UniSTSRGSC3.4
Celera1321,988,173 - 21,988,369UniSTS
Cytogenetic Map13p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001122677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC100090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000003870   ⟹   ENSRNOP00000003870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,634,171 - 22,680,976 (+)Ensembl
mRatBN7.2 Ensembl1322,119,568 - 22,166,373 (+)Ensembl
Rnor_6.0 Ensembl1325,966,428 - 26,013,338 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000061814   ⟹   ENSRNOP00000058528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1325,966,428 - 26,000,768 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086167   ⟹   ENSRNOP00000075165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,634,171 - 22,680,976 (+)Ensembl
mRatBN7.2 Ensembl1322,119,568 - 22,166,373 (+)Ensembl
Rnor_6.0 Ensembl1325,966,810 - 26,011,355 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145830   ⟹   ENSRNOP00000112556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,634,171 - 22,679,094 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000155486   ⟹   ENSRNOP00000109233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,634,171 - 22,680,976 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164304   ⟹   ENSRNOP00000112673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,634,171 - 22,708,464 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000166696   ⟹   ENSRNOP00000102802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,634,171 - 22,691,744 (+)Ensembl
RefSeq Acc Id: NM_001122677   ⟹   NP_001116149
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,634,171 - 22,681,000 (+)NCBI
mRatBN7.21322,119,568 - 22,166,397 (+)NCBI
Rnor_6.01325,966,428 - 26,013,338 (+)NCBI
Rnor_5.01331,122,293 - 31,210,284 (+)NCBI
RGSC_v3.41312,148,072 - 12,196,570 (+)RGD
Celera1321,988,903 - 22,034,139 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271042   ⟹   NP_001257971
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,634,171 - 22,668,512 (+)NCBI
mRatBN7.21322,119,568 - 22,153,909 (+)NCBI
Rnor_6.01325,966,428 - 26,000,769 (+)NCBI
Rnor_5.01331,122,293 - 31,210,284 (+)NCBI
Celera1321,988,903 - 22,023,239 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249626   ⟹   XP_006249688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,681,000 (+)NCBI
mRatBN7.21322,118,677 - 22,166,397 (+)NCBI
Rnor_6.01325,961,762 - 26,014,926 (+)NCBI
Rnor_5.01331,122,293 - 31,210,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090658   ⟹   XP_038946586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,708,232 (+)NCBI
mRatBN7.21322,118,677 - 22,193,626 (+)NCBI
RefSeq Acc Id: XM_039090666   ⟹   XP_038946594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,667,917 (+)NCBI
mRatBN7.21322,118,677 - 22,153,314 (+)NCBI
RefSeq Acc Id: XM_063272218   ⟹   XP_063128288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272219   ⟹   XP_063128289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272220   ⟹   XP_063128290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272221   ⟹   XP_063128291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272222   ⟹   XP_063128292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272223   ⟹   XP_063128293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272224   ⟹   XP_063128294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,662,359 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272225   ⟹   XP_063128295
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,658,021 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272226   ⟹   XP_063128296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,667,259 - 22,708,232 (+)NCBI
RefSeq Acc Id: XM_063272227   ⟹   XP_063128297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,662,359 - 22,708,232 (+)NCBI
RefSeq Acc Id: XR_005492235
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,676,713 (+)NCBI
mRatBN7.21322,118,677 - 22,162,110 (+)NCBI
RefSeq Acc Id: XR_005492236
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,674,359 (+)NCBI
mRatBN7.21322,118,677 - 22,159,756 (+)NCBI
RefSeq Acc Id: XR_005492237
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,676,713 (+)NCBI
mRatBN7.21322,118,677 - 22,162,103 (+)NCBI
RefSeq Acc Id: XR_010056913
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,621,275 - 22,707,563 (+)NCBI
RefSeq Acc Id: NP_001116149   ⟸   NM_001122677
- Peptide Label: isoform 1
- UniProtKB: A0A0H2UHB2 (UniProtKB/TrEMBL),   A0A8L2R9Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257971   ⟸   NM_001271042
- Peptide Label: isoform 2
- UniProtKB: Q498S6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006249688   ⟸   XM_006249626
- Peptide Label: isoform X7
- UniProtKB: Q498S6 (UniProtKB/Swiss-Prot),   A0A8L2R9Z0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000058528   ⟸   ENSRNOT00000061814
Ensembl Acc Id: ENSRNOP00000003870   ⟸   ENSRNOT00000003870
Ensembl Acc Id: ENSRNOP00000075165   ⟸   ENSRNOT00000086167
RefSeq Acc Id: XP_038946586   ⟸   XM_039090658
- Peptide Label: isoform X8
- UniProtKB: A0A8L2R9Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946594   ⟸   XM_039090666
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063128288   ⟸   XM_063272218
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R9Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128291   ⟸   XM_063272221
- Peptide Label: isoform X4
- UniProtKB: A0A8L2R9Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128292   ⟸   XM_063272222
- Peptide Label: isoform X5
- UniProtKB: A0A8L2R9Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128290   ⟸   XM_063272220
- Peptide Label: isoform X3
- UniProtKB: A0A8L2R9Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128289   ⟸   XM_063272219
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R9Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128293   ⟸   XM_063272223
- Peptide Label: isoform X6
- UniProtKB: A0A8L2R9Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128295   ⟸   XM_063272225
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063128294   ⟸   XM_063272224
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063128297   ⟸   XM_063272227
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063128296   ⟸   XM_063272226
- Peptide Label: isoform X10
Ensembl Acc Id: ENSRNOP00000109233   ⟸   ENSRNOT00000155486
Ensembl Acc Id: ENSRNOP00000112556   ⟸   ENSRNOT00000145830
Ensembl Acc Id: ENSRNOP00000102802   ⟸   ENSRNOT00000166696
Ensembl Acc Id: ENSRNOP00000112673   ⟸   ENSRNOT00000164304
Protein Domains
CCHC-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q498S6-F1-model_v2 AlphaFold Q498S6 1-1168 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698747
Promoter ID:EPDNEW_R9272
Type:multiple initiation site
Name:Zcchc2_1
Description:zinc finger CCHC-type containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01325,966,466 - 25,966,526EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310626 AgrOrtholog
BioCyc Gene G2FUF-18612 BioCyc
Ensembl Genes ENSRNOG00000002882 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000003870 ENTREZGENE
  ENSRNOT00000164304 ENTREZGENE
Gene3D-CATH 3.30.1520.10 UniProtKB/Swiss-Prot
  Zinc finger, CCHC-type UniProtKB/Swiss-Prot
InterPro PX_dom_sf UniProtKB/Swiss-Prot
  ZCCHC2 UniProtKB/Swiss-Prot
  Znf_CCHC UniProtKB/Swiss-Prot
  Znf_CCHC_sf UniProtKB/Swiss-Prot
KEGG Report rno:304695 UniProtKB/Swiss-Prot
NCBI Gene 304695 ENTREZGENE
PANTHER PTHR46939 UniProtKB/Swiss-Prot
  ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot
Pfam Vts1 UniProtKB/Swiss-Prot
  zf-CCHC UniProtKB/Swiss-Prot
PhenoGen Zcchc2 PhenoGen
PROSITE ZF_CCHC UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002882 RatGTEx
SMART ZnF_C2HC UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57756 UniProtKB/Swiss-Prot
  SSF64268 UniProtKB/Swiss-Prot
UniProt A0A0H2UHB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R9Z0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LDC7_RAT UniProtKB/TrEMBL
  A0ABK0LZN9_RAT UniProtKB/TrEMBL
  A0ABK0M0Y9_RAT UniProtKB/TrEMBL
  A0ABK0M9I9_RAT UniProtKB/TrEMBL
  Q498S6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Zcchc2  zinc finger CCHC-type containing 2  Zcchc2  zinc finger, CCHC domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Zcchc2  zinc finger, CCHC domain containing 2  Tnfrsf11a  tumor necrosis factor receptor superfamily, member 11a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Tnfrsf11a  tumor necrosis factor receptor superfamily, member 11a  Tnfrsf11a_predicted  tumor necrosis factor receptor superfamily, member 11a (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tnfrsf11a_predicted  tumor necrosis factor receptor superfamily, member 11a (predicted)      Symbol and Name status set to approved 70820 APPROVED