Pspc1 (paraspeckle component 1) - Rat Genome Database

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Gene: Pspc1 (paraspeckle component 1) Rattus norvegicus
Analyze
Symbol: Pspc1
Name: paraspeckle component 1
RGD ID: 1310122
Description: Predicted to enable RNA binding activity. Predicted to be involved in activation of innate immune response; negative regulation of DNA-templated transcription; and regulation of circadian rhythm. Predicted to act upstream of or within membraneless organelle assembly. Predicted to be located in nucleoplasm. Predicted to be active in paraspeckles. Orthologous to human PSPC1 (paraspeckle component 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305910; MGC116378; paraspeckle protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,941,445 - 35,027,460 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1534,967,477 - 35,026,828 (-)EnsemblGRCr8
mRatBN7.21530,828,617 - 30,911,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,828,626 - 30,911,202 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1532,843,198 - 32,902,554 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,993,854 - 34,053,213 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,251,952 - 32,311,317 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,946,914 - 37,030,273 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,950,257 - 37,030,281 (-)Ensemblrn6Rnor6.0
Rnor_5.01540,799,244 - 40,883,016 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41535,718,357 - 35,779,139 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1530,565,581 - 30,624,899 (-)NCBICelera
RGSC_v3.11535,734,056 - 35,794,839 (-)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
aconitine  (EXP)
aflatoxin B1  (EXP,ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
gentamycin  (EXP)
glycitein  (ISO)
glycitin  (ISO)
ifosfamide  (ISO)
indole-3-methanol  (EXP)
ivermectin  (ISO)
methapyrilene  (EXP,ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
Nivalenol  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
fibrillar center  (ISO)
nuclear matrix  (IEA)
nuclear speck  (IEA)
nucleolus  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IBA)
paraspeckles  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19217333   PMID:22658674   PMID:22681889   PMID:22840402   PMID:22966205   PMID:28712728   PMID:30053369  


Genomics

Comparative Map Data
Pspc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,941,445 - 35,027,460 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1534,967,477 - 35,026,828 (-)EnsemblGRCr8
mRatBN7.21530,828,617 - 30,911,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,828,626 - 30,911,202 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1532,843,198 - 32,902,554 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,993,854 - 34,053,213 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,251,952 - 32,311,317 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,946,914 - 37,030,273 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,950,257 - 37,030,281 (-)Ensemblrn6Rnor6.0
Rnor_5.01540,799,244 - 40,883,016 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41535,718,357 - 35,779,139 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1530,565,581 - 30,624,899 (-)NCBICelera
RGSC_v3.11535,734,056 - 35,794,839 (-)NCBI
Cytogenetic Map15p12NCBI
PSPC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381319,671,205 - 19,782,945 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1319,674,752 - 19,783,019 (-)Ensemblhg38GRCh38
GRCh371320,248,892 - 20,357,085 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,146,896 - 19,255,083 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341319,147,527 - 19,255,082NCBI
Celera131,310,734 - 1,418,914 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,053,841 - 1,162,259 (-)NCBIHuRef
CHM1_11320,216,795 - 20,325,586 (-)NCBICHM1_1
T2T-CHM13v2.01318,867,270 - 18,979,203 (-)NCBIT2T-CHM13v2.0
Pspc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,959,898 - 57,015,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,958,167 - 57,015,773 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381456,722,441 - 56,778,318 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,720,710 - 56,778,316 (-)Ensemblmm10GRCm38
MGSCv371457,341,286 - 57,397,153 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361455,676,559 - 55,732,426 (-)NCBIMGSCv36mm8
Celera1454,520,204 - 54,576,103 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.4NCBI
Pspc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955497575,340 - 642,809 (-)Ensembl
ChiLan1.0NW_004955497574,678 - 641,885 (-)NCBIChiLan1.0ChiLan1.0
PSPC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21419,304,282 - 19,410,858 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11310,416,794 - 10,522,261 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,001,131 - 1,106,627 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11319,319,242 - 19,424,074 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1319,347,276 - 19,428,997 (-)EnsemblpanPan2panpan1.1
PSPC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,287,827 - 18,361,801 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,287,899 - 18,359,553 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2518,317,277 - 18,391,326 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02518,425,772 - 18,499,922 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,425,958 - 18,497,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12518,291,628 - 18,365,647 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,303,745 - 18,377,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,360,192 - 18,434,592 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pspc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,329,144 - 120,422,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,876,475 - 1,967,662 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367201,876,726 - 1,941,705 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSPC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11482,564 - 572,090 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.111477,010 - 572,090 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,908,816 - 86,971,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PSPC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.131,160,227 - 1,232,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605743,304,564 - 43,413,173 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pspc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477617,906,063 - 17,978,098 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477617,906,700 - 17,978,885 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pspc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11268,052,989 - 68,112,310 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pspc1
389 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:26
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000028219
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
BE104349  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21530,877,811 - 30,877,990 (+)MAPPERmRatBN7.2
Rnor_6.01536,996,721 - 36,996,899NCBIRnor6.0
Rnor_5.01540,849,051 - 40,849,229UniSTSRnor5.0
RGSC_v3.41535,745,751 - 35,745,929UniSTSRGSC3.4
Celera1530,591,544 - 30,591,722UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000028219   ⟹   ENSRNOP00000028219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1534,967,477 - 35,026,828 (-)Ensembl
mRatBN7.2 Ensembl1530,851,850 - 30,911,202 (-)Ensembl
Rnor_6.0 Ensembl1536,970,148 - 37,030,240 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1536,970,474 - 36,976,645 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1536,970,461 - 36,973,079 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1536,972,564 - 36,973,190 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1534,967,477 - 35,026,828 (-)Ensembl
mRatBN7.2 Ensembl1530,851,850 - 30,911,202 (-)Ensembl
Rnor_6.0 Ensembl1536,969,807 - 36,978,358 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088037   ⟹   ENSRNOP00000070730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,828,626 - 30,911,202 (-)Ensembl
Rnor_6.0 Ensembl1536,950,257 - 37,030,281 (-)Ensembl
RefSeq Acc Id: NM_001025672   ⟹   NP_001020843
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,967,477 - 35,026,828 (-)NCBI
mRatBN7.21530,851,848 - 30,911,202 (-)NCBI
Rnor_6.01536,970,155 - 37,030,220 (-)NCBI
Rnor_5.01540,799,244 - 40,883,016 (-)NCBI
RGSC_v3.41535,718,357 - 35,779,139 (-)RGD
Celera1530,565,581 - 30,624,899 (-)RGD
Sequence:
RefSeq Acc Id: XM_039093316   ⟹   XP_038949244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,944,248 - 35,027,460 (-)NCBI
mRatBN7.21530,828,617 - 30,911,315 (-)NCBI
RefSeq Acc Id: XM_039093317   ⟹   XP_038949245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,941,445 - 35,027,454 (-)NCBI
mRatBN7.21530,828,617 - 30,911,302 (-)NCBI
RefSeq Acc Id: XM_063274262   ⟹   XP_063130332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,944,248 - 35,027,358 (-)NCBI
RefSeq Acc Id: NP_001020843   ⟸   NM_001025672
- UniProtKB: Q4KLH4 (UniProtKB/Swiss-Prot),   A6KHA3 (UniProtKB/TrEMBL),   A0A8I6ATP2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028219   ⟸   ENSRNOT00000028219
Ensembl Acc Id: ENSRNOP00000070730   ⟸   ENSRNOT00000088037
RefSeq Acc Id: XP_038949244   ⟸   XM_039093316
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYN7 (UniProtKB/TrEMBL),   A0A8I6ATP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949245   ⟸   XM_039093317
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130332   ⟸   XM_063274262
- Peptide Label: isoform X1
- UniProtKB: Q4KLH4 (UniProtKB/Swiss-Prot),   A6KHA3 (UniProtKB/TrEMBL),   A0A8I6ATP2 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLH4-F1-model_v2 AlphaFold Q4KLH4 1-522 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699716
Promoter ID:EPDNEW_R10239
Type:multiple initiation site
Name:Pspc1_1
Description:paraspeckle component 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01537,030,228 - 37,030,288EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310122 AgrOrtholog
BioCyc Gene G2FUF-13624 BioCyc
Ensembl Genes ENSRNOG00000020782 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000028219 ENTREZGENE
  ENSRNOT00000028219.7 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
  6.10.250.1170 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7384173 IMAGE-MGC_LOAD
InterPro NOPS UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  PSP1_RRM1 UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report rno:305910 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116378 IMAGE-MGC_LOAD
NCBI Gene 305910 ENTREZGENE
PANTHER RNA RECOGNITION MOTIF-CONTAINING UniProtKB/Swiss-Prot
Pfam NOPS UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Pspc1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000020782 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A0G2JYN7 ENTREZGENE
  A0A8I6ATP2 ENTREZGENE, UniProtKB/TrEMBL
  A6KHA3 ENTREZGENE, UniProtKB/TrEMBL
  PSPC1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-06 Pspc1  paraspeckle component 1  Pspc1  paraspeckle protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Pspc1  paraspeckle protein 1  Pspc1_predicted  paraspeckle protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pspc1_predicted  paraspeckle protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED