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Gene: B4galt5 (beta-1,4-galactosyltransferase 5) Rattus norvegicus

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Symbol:

B4galt5

Name:

beta-1,4-galactosyltransferase 5

RGD ID:

1310062

Description:

Predicted to enable N-acetyllactosamine synthase activity and UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Predicted to be involved in several processes, including ganglioside biosynthetic process via lactosylceramide; neurogenesis; and protein glycosylation. Predicted to act upstream of or within poly-N-acetyllactosamine biosynthetic process. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT5 (beta-1,4-galactosyltransferase 5); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362275; UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,437,073 - 176,453,001 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	176,437,073 - 176,488,978 (-)	Ensembl				GRCr8
mRatBN7.2	3	156,018,056 - 156,033,983 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	156,018,053 - 156,070,074 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	159,819,606 - 159,835,546 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	168,318,584 - 168,334,523 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	166,060,292 - 166,076,232 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	164,039,731 - 164,055,561 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	164,039,731 - 164,095,878 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	170,196,325 - 170,211,612 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	158,440,189 - 158,449,419 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	154,599,548 - 154,615,476 (-)	NCBI		Celera
RGSC_v3.1	3	158,349,006 - 158,397,606 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Experimental Liver Cirrhosis (ISO)

juvenile rheumatoid arthritis (ISO)

multiple sclerosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-butoxyethanol (ISO)

2-hydroxypropanoic acid (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (EXP,ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butan-1-ol (ISO)

butanal (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

carbon nanotube (ISO)

carmustine (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

corosolic acid (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diquat (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

flusilazole (EXP)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

indometacin (ISO)

isobutanol (ISO)

levonorgestrel (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

N-nitrosodimethylamine (EXP)

oleic acid (ISO)

paracetamol (EXP,ISO)

paraquat (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

poly(I:C) (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

Soman (EXP)

succimer (ISO)

tamoxifen (ISO)

testosterone undecanoate (ISO)

tetraphene (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

central nervous system myelination (IEA,ISO)

central nervous system neuron axonogenesis (IEA,ISO)

ganglioside biosynthetic process (IEA,ISO)

glycoprotein biosynthetic process (IBA,IEA,ISO)

neuron maturation (IEA,ISO)

poly-N-acetyllactosamine biosynthetic process (ISO)

positive regulation of embryonic development (IEA,ISO)

regulation of protein stability (IEA,ISO)

sphingolipid metabolic process (IEA)

Cellular Component

Golgi apparatus (IBA,IEA,ISO)

Golgi cisterna membrane (IEA)

Golgi membrane (IEA)

trans-Golgi network (IEA,ISO)

Molecular Function

glycosyltransferase activity (IEA)

metal ion binding (IEA)

N-acetyllactosamine synthase activity (IEA,ISO)

protein binding (ISO)

transferase activity (IEA)

UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Regulation of astrocyte activation by glycolipids drives chronic CNS inflammation.	Mayo L, etal., Nat Med. 2014 Oct;20(10):1147-56. doi: 10.1038/nm.3681. Epub 2014 Sep 14.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17917074	PMID:18320333	PMID:18512149	PMID:20417617	PMID:20574042	PMID:21057870	PMID:23376485	PMID:23882130	PMID:24498430	PMID:29415997	PMID:29546034	PMID:30114188

Genomics

Comparative Map Data

B4galt5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,437,073 - 176,453,001 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	176,437,073 - 176,488,978 (-)	Ensembl				GRCr8
mRatBN7.2	3	156,018,056 - 156,033,983 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	156,018,053 - 156,070,074 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	159,819,606 - 159,835,546 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	168,318,584 - 168,334,523 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	166,060,292 - 166,076,232 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	164,039,731 - 164,055,561 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	164,039,731 - 164,095,878 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	170,196,325 - 170,211,612 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	158,440,189 - 158,449,419 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	154,599,548 - 154,615,476 (-)	NCBI		Celera
RGSC_v3.1	3	158,349,006 - 158,397,606 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

B4GALT5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	49,632,945 - 49,713,878 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	49,632,945 - 49,713,908 (-)	Ensembl			hg38	GRCh38
GRCh37	20	48,249,482 - 48,330,415 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	47,682,889 - 47,763,745 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	47,682,888 - 47,763,745	NCBI
Celera	20	44,954,098 - 45,035,021 (-)	NCBI		Celera
Cytogenetic Map	20	q13.13	NCBI
HuRef	20	44,998,184 - 45,021,953 (-)	NCBI		HuRef
CHM1_1	20	48,154,191 - 48,235,100 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	51,402,498 - 51,483,440 (-)	NCBI		T2T-CHM13v2.0

B4galt5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	167,140,364 - 167,191,155 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	167,140,364 - 167,191,103 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	167,298,444 - 167,349,178 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	167,298,444 - 167,349,183 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	167,123,944 - 167,174,678 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	166,992,266 - 167,040,388 (-)	NCBI		MGSCv36	mm8
Celera	2	173,239,050 - 173,289,822 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	87.22	NCBI

B4galt5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	8,534,220 - 8,559,672 (+)	Ensembl
ChiLan1.0	NW_004955445	8,471,684 - 8,559,672 (+)	NCBI	ChiLan1.0	ChiLan1.0

B4GALT5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	55,381,362 - 55,462,019 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	55,374,468 - 55,455,125 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	45,977,801 - 46,058,429 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	47,042,479 - 47,123,209 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	47,041,469 - 47,123,214 (-)	Ensembl			panPan2	panpan1.1

B4GALT5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	36,220,973 - 36,241,482 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	36,221,189 - 36,300,804 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	35,462,952 - 35,538,860 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	36,925,343 - 37,001,298 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	36,925,564 - 37,001,902 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	36,166,534 - 36,242,395 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	36,303,207 - 36,376,262 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	36,842,820 - 36,918,775 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

B4galt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	189,221,713 - 189,282,986 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	4,719,052 - 4,736,635 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	4,719,198 - 4,736,638 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B4GALT5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	51,259,813 - 51,334,020 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	51,257,273 - 51,334,566 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	57,578,640 - 57,655,502 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B4GALT5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	14,270,945 - 14,357,052 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	14,271,141 - 14,354,159 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	62,756,661 - 62,840,309 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B4galt5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	5,766,903 - 5,789,140 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	5,770,586 - 5,792,036 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

B4galt5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	150,638,320 - 150,688,999 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	523
Count of miRNA genes:	260
Interacting mature miRNAs:	327
Transcripts:	ENSRNOT00000064849
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	166376089	177728348	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001438263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064849 ⟹ ENSRNOP00000060927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	176,437,073 - 176,453,001 (-)	Ensembl
mRatBN7.2 Ensembl	3	156,018,056 - 156,033,983 (-)	Ensembl
Rnor_6.0 Ensembl	3	164,039,731 - 164,055,561 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079414 ⟹ ENSRNOP00000072676

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	176,438,854 - 176,488,978 (-)	Ensembl
mRatBN7.2 Ensembl	3	156,018,053 - 156,070,074 (-)	Ensembl
Rnor_6.0 Ensembl	3	164,042,079 - 164,095,878 (-)	Ensembl

RefSeq Acc Id:

NM_001108608 ⟹ NP_001102078

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,437,073 - 176,453,001 (-)	NCBI
mRatBN7.2	3	156,018,056 - 156,033,983 (-)	NCBI
Rnor_6.0	3	164,039,731 - 164,055,561 (-)	NCBI
Rnor_5.0	3	170,196,325 - 170,211,612 (-)	NCBI
RGSC_v3.4	3	158,440,189 - 158,449,419 (-)	RGD
Celera	3	154,599,548 - 154,615,476 (-)	RGD

Sequence:

show sequence

CACAGTGAACACCTACCTCTTCATGGTGCAGGCTCAAGGCATCCTGCTTCGGGACAACGTGAGG
ACCATCGGTGCCCAGGTGTATGAGCAGGTGGTCCGCAGCGCCTACGCCAAGAGGAACAGCAGCC
TGAATGACTCAGATTATCCTCTGGACTTGAACCACAGTGAAGCCTTTCCCCCAACCACAACATT
TCTTCCTGAAGATTTCACCTATTTTGCCAACCACCCTTGCCCGGAGAGGCTCCCTTCCATGAAG
GGCCCGATAGACATAAACATGAGTGAGATCAGAATGGACGATATTCATGAGCTCTTCTCCAGAG
ACCCGGCCATCAGGCTTGGAGGACACTGGAAGCCTGCAGACTGCATGCCTCGGTGGAAGGTGGC
CATCCTCATCCCTTTCCGGAACCGCCACGACTCCTTCCTGTGTCTGCCTCCCTGCAGCCTCTGT
CCCTGAAGCAGGGATCTGTGTGTGGCGAGGAGCGTTCTCCTCTGGCCTCTGCTCTTCGCCTTTT
TGCCTTCAGCACCCTTGATGTTCATGGTTTACATGGGTGGGGGTGGGGTGTAGATACACGGGGA
TGGGGTTTACATCACACAGTTGGTTCTGAGGACAGATGATCCCCACAGACTGTGGGAGTGATTG
GCCAGGCCTTTTTTTTTGTTCTTTTTGTAGAGTAGAGTGGTATCTAGGGAACAGATGGCGCTGC
AGAGCGCTTCCCGCTCGTATGAGAGAGCAGGTGCCTGCCCTTGAGAGCGCTGGTGAACCACGTC
ATCTGTTTGCACTGGGCAAGGAGCTGCACGAGGCGCTGCGTTGACTTGCCTTTGTCTTACGGTA
CACACAGCAATAAAGATTGGGTTCCGCCTGCCCGGCTCAACCCTCTGCCCCCTGTGTTAGTTTT
ACAGTGCGGGGAAGGAAACCCATGGCTGATGTGCTAGGCAAGAGCTCTGCCACTGAGTCACGGG
TCCAGCCCCCTCTCCCCTCATCCTTCTGTTTCCACTCTGAAGGTCAGGGATGCTGTCGCTGTGG
TAGAGCCTTGGTGTCCTTGGAGGGACAGTGGTGTGTGTAGCATGTGTCCTGGCTGAAGCCCTGC
ATCCTCACAATAGCCACAGGGCACCTTTTTAAGCCAAAGGCTGATACTTGATTTAAGAAGGAAA
ATGCAGATTTGGGGACAAAGAAAGGTCTTTTTACTGCTCAAGTCGGGTCACTTATGTTCCCTTG
CAATCATGTCCAAGTTTGTTATTAGTGTGGACTCTTGTGGGCACTGTCAGTCATTGTCCGCCCA
GTCACATACCGAGTGGGAAATGTCACAGTCAGAGCCACACCACTGGACCACACATTAGGTCATT
GCTTAAAGAAAATGACATTGAGAATCAAGTGTGACCTTGGTGTACTTTGGCAGCTGAAATTACT
CCATGCTACAGACGAGTGACCCTTAAGCCGACCTGCCCTTGACTGACTGCCCTGTGTGTGCAAG
GTCTCTCTCCGCACAGGCTTTCTTTGGGGAGGGGGGATTTGCAAAACTTTAATTTTGCTAAAAT
GGGGACTCCTGTCATCGAGTTCCTTCCTCAGAGCGGCAGAGCACACACTGACTGTGCCTACCAT
CGACGAGGCACTGACGCCACTGGCTTAGCCACCATTACTGTCTTTGTTCTGAGCTTGCTCTTTG
TTTTAAAGGTGCCAGGGGGACATTTTTGCACTGAAGCCTAAAGATGTTTTAAAAACACTTTTCA
CAGAAATAGTCCTTGTCATTACATTGTTCACTCATGTGTTTGTACATTTTTGTATGTTAATTTA
TGAATGATTTTTTCAGTAAAAAATACATATTCAATAACC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102078	(Get FASTA)	NCBI Sequence Viewer
	NP_001425192	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96413	(Get FASTA)	NCBI Sequence Viewer
	EDL96414	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060927.2
	ENSRNOP00000072676.1

RefSeq Acc Id:	NP_001102078 ⟸ NM_001108608
- Sequence:	show sequence MVQAQGILLRDNVRTIGAQVYEQVVRSAYAKRNSSLNDSDYPLDLNHSEAFPPTTTFLPEDFTY FANHPCPERLPSMKGPIDINMSEIRMDDIHELFSRDPAIRLGGHWKPADCMPRWKVAILIPFRN RHDSFLCLPPCSLCP hide sequence

Ensembl Acc Id:

ENSRNOP00000072676 ⟸ ENSRNOT00000079414

Ensembl Acc Id:

ENSRNOP00000060927 ⟸ ENSRNOT00000064849

Protein Domains

Galactosyltransferase C-terminal Galactosyltransferase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K3K5-F1-model_v2	AlphaFold	A0A0G2K3K5	1-388	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310062	AgrOrtholog
BioCyc Gene	G2FUF-46742	BioCyc
Ensembl Genes	ENSRNOG00000008283	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064849.5	UniProtKB/TrEMBL
	ENSRNOT00000079414.3	UniProtKB/TrEMBL
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/TrEMBL
InterPro	Galactosyl_T_2_met	UniProtKB/TrEMBL
	Galactosyl_T_C	UniProtKB/TrEMBL
	Glyco_transf_7N	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
KEGG Report	rno:362275	UniProtKB/TrEMBL
NCBI Gene	362275	ENTREZGENE
PANTHER	BETA-1,4-GALACTOSYLTRANSFERASE 5	UniProtKB/TrEMBL
	Galactosyl_T_2	UniProtKB/TrEMBL
Pfam	Glyco_transf_7C	UniProtKB/TrEMBL
	Glyco_transf_7N	UniProtKB/TrEMBL
PhenoGen	B4galt5	PhenoGen
PRINTS	B14GALTRFASE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008283	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/TrEMBL
UniProt	A0A0G2K3K5	ENTREZGENE, UniProtKB/TrEMBL
	A6JXJ4_RAT	UniProtKB/TrEMBL
	A6JXJ6	ENTREZGENE, UniProtKB/TrEMBL
	F1LZL3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	B4galt5	beta-1,4-galactosyltransferase 5	B4galt5	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	B4galt5	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	B4galt5_predicted	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	B4galt5_predicted	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)