B4galt5 (beta-1,4-galactosyltransferase 5) - Rat Genome Database

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Gene: B4galt5 (beta-1,4-galactosyltransferase 5) Rattus norvegicus
Analyze
Symbol: B4galt5
Name: beta-1,4-galactosyltransferase 5
RGD ID: 1310062
Description: Predicted to enable N-acetyllactosamine synthase activity and UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Predicted to be involved in several processes, including neurogenesis; positive regulation of embryonic development; and regulation of protein stability. Predicted to act upstream of or within poly-N-acetyllactosamine biosynthetic process. Predicted to be located in trans-Golgi network. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT5 (beta-1,4-galactosyltransferase 5); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362275; UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83176,437,073 - 176,453,001 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3176,437,073 - 176,488,978 (-)EnsemblGRCr8
mRatBN7.23156,018,056 - 156,033,983 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3156,018,053 - 156,070,074 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3159,819,606 - 159,835,546 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03168,318,584 - 168,334,523 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03166,060,292 - 166,076,232 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3174,516,616 - 174,532,556 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3181,377,454 - 181,393,394 (-)NCBILyon_Normotensive
Lyon_Hypertensive3173,344,367 - 173,360,307 (-)NCBILyon_Hypertensive
F344_StmMcwi3154,240,420 - 154,256,350 (-)NCBIF344_StmMcwi
Rnor_6.03164,039,731 - 164,055,561 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,039,731 - 164,095,878 (-)Ensemblrn6Rnor6.0
Rnor_5.03170,196,325 - 170,211,612 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43158,440,189 - 158,449,419 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3154,599,548 - 154,615,476 (-)NCBICelera
RGSC_v3.13158,349,006 - 158,397,606 (-)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP,ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
corosolic acid  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
diquat  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flusilazole  (EXP)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
levonorgestrel  (ISO)
lipopolysaccharide  (ISO)
maneb  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N-nitrosodimethylamine  (EXP)
oleic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
poly(I:C)  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
succimer  (ISO)
tamoxifen  (ISO)
testosterone undecanoate  (ISO)
tetraphene  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Regulation of astrocyte activation by glycolipids drives chronic CNS inflammation. Mayo L, etal., Nat Med. 2014 Oct;20(10):1147-56. doi: 10.1038/nm.3681. Epub 2014 Sep 14.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17917074   PMID:18320333   PMID:18512149   PMID:20417617   PMID:20574042   PMID:21057870   PMID:23376485   PMID:23882130   PMID:24498430   PMID:29415997   PMID:29546034   PMID:30114188  


Genomics

Comparative Map Data
B4galt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83176,437,073 - 176,453,001 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3176,437,073 - 176,488,978 (-)EnsemblGRCr8
mRatBN7.23156,018,056 - 156,033,983 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3156,018,053 - 156,070,074 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3159,819,606 - 159,835,546 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03168,318,584 - 168,334,523 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03166,060,292 - 166,076,232 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3174,516,616 - 174,532,556 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3181,377,454 - 181,393,394 (-)NCBILyon_Normotensive
Lyon_Hypertensive3173,344,367 - 173,360,307 (-)NCBILyon_Hypertensive
F344_StmMcwi3154,240,420 - 154,256,350 (-)NCBIF344_StmMcwi
Rnor_6.03164,039,731 - 164,055,561 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,039,731 - 164,095,878 (-)Ensemblrn6Rnor6.0
Rnor_5.03170,196,325 - 170,211,612 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43158,440,189 - 158,449,419 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3154,599,548 - 154,615,476 (-)NCBICelera
RGSC_v3.13158,349,006 - 158,397,606 (-)NCBI
Cytogenetic Map3q42NCBI
B4GALT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382049,632,945 - 49,713,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2049,632,945 - 49,713,908 (-)Ensemblhg38GRCh38
GRCh372048,249,482 - 48,330,415 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362047,682,889 - 47,763,745 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342047,682,888 - 47,763,745NCBI
Celera2044,954,098 - 45,035,021 (-)NCBICelera
Cytogenetic Map20q13.13NCBI
HuRef2044,998,184 - 45,021,953 (-)NCBIHuRef
CHM1_12048,154,191 - 48,235,100 (-)NCBICHM1_1
T2T-CHM13v2.02051,402,498 - 51,483,440 (-)NCBIT2T-CHM13v2.0
B4galt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,140,364 - 167,191,155 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2167,140,364 - 167,191,103 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382167,298,444 - 167,349,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,298,444 - 167,349,183 (-)Ensemblmm10GRCm38
MGSCv372167,123,944 - 167,174,678 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362166,992,266 - 167,040,388 (-)NCBIMGSCv36mm8
Celera2173,239,050 - 173,289,822 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map287.22NCBI
B4galt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,534,220 - 8,559,672 (+)Ensembl
ChiLan1.0NW_0049554458,471,684 - 8,559,672 (+)NCBIChiLan1.0ChiLan1.0
B4GALT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,381,362 - 55,462,019 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12055,374,468 - 55,455,125 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02045,977,801 - 46,058,429 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12047,042,479 - 47,123,209 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,041,469 - 47,123,214 (-)EnsemblpanPan2panpan1.1
B4GALT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,220,973 - 36,241,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,221,189 - 36,300,804 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2435,462,952 - 35,538,860 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02436,925,343 - 37,001,298 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2436,925,564 - 37,001,902 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12436,166,534 - 36,242,395 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02436,303,207 - 36,376,262 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02436,842,820 - 36,918,775 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
B4galt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,221,713 - 189,282,986 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365144,719,052 - 4,736,635 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365144,719,198 - 4,736,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,259,813 - 51,334,020 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11751,257,273 - 51,334,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21757,578,640 - 57,655,502 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,270,945 - 14,357,052 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl214,271,141 - 14,354,159 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605062,756,661 - 62,840,309 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B4galt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247905,766,903 - 5,789,140 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247905,770,586 - 5,792,036 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
B4galt5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15150,638,320 - 150,688,999 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:523
Count of miRNA genes:260
Interacting mature miRNAs:327
Transcripts:ENSRNOT00000064849
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3166376089177728348Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064849   ⟹   ENSRNOP00000060927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3176,437,073 - 176,453,001 (-)Ensembl
mRatBN7.2 Ensembl3156,018,056 - 156,033,983 (-)Ensembl
Rnor_6.0 Ensembl3164,039,731 - 164,055,561 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079414   ⟹   ENSRNOP00000072676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3176,438,854 - 176,488,978 (-)Ensembl
mRatBN7.2 Ensembl3156,018,053 - 156,070,074 (-)Ensembl
Rnor_6.0 Ensembl3164,042,079 - 164,095,878 (-)Ensembl
RefSeq Acc Id: NM_001108608   ⟹   NP_001102078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83176,437,073 - 176,453,001 (-)NCBI
mRatBN7.23156,018,056 - 156,033,983 (-)NCBI
Dahl_SR_JrHsd3174,516,616 - 174,532,556 (-)NCBI
Lyon_Normotensive3181,377,454 - 181,393,394 (-)NCBI
Lyon_Hypertensive3173,344,367 - 173,360,307 (-)NCBI
F344_StmMcwi3154,240,420 - 154,256,350 (-)NCBI
Rnor_6.03164,039,731 - 164,055,561 (-)NCBI
Rnor_5.03170,196,325 - 170,211,612 (-)NCBI
RGSC_v3.43158,440,189 - 158,449,419 (-)RGD
Celera3154,599,548 - 154,615,476 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102078 (Get FASTA)   NCBI Sequence Viewer  
  NP_001425192 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96413 (Get FASTA)   NCBI Sequence Viewer  
  EDL96414 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060927.2
  ENSRNOP00000072676.1
RefSeq Acc Id: NP_001102078   ⟸   NM_001108608
- Sequence:
Ensembl Acc Id: ENSRNOP00000072676   ⟸   ENSRNOT00000079414
Ensembl Acc Id: ENSRNOP00000060927   ⟸   ENSRNOT00000064849
Protein Domains
Galactosyltransferase C-terminal   Galactosyltransferase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K3K5-F1-model_v2 AlphaFold A0A0G2K3K5 1-388 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310062 AgrOrtholog
BioCyc Gene G2FUF-46742 BioCyc
Ensembl Genes ENSRNOG00000008283 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064849.5 UniProtKB/TrEMBL
  ENSRNOT00000079414.3 UniProtKB/TrEMBL
Gene3D-CATH Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/TrEMBL
InterPro Galactosyl_T_2_met UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report rno:362275 UniProtKB/TrEMBL
NCBI Gene 362275 ENTREZGENE
PANTHER BETA-1,4-GALACTOSYLTRANSFERASE 5 UniProtKB/TrEMBL
  Galactosyl_T_2 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PhenoGen B4galt5 PhenoGen
PRINTS B14GALTRFASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008283 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0G2K3K5 ENTREZGENE, UniProtKB/TrEMBL
  A6JXJ4_RAT UniProtKB/TrEMBL
  A6JXJ6 ENTREZGENE, UniProtKB/TrEMBL
  F1LZL3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 B4galt5  beta-1,4-galactosyltransferase 5  B4galt5  UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 B4galt5  UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5   B4galt5_predicted  UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 B4galt5_predicted  UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED