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Gene: Prdm15 (PR/SET domain 15) Rattus norvegicus

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Symbol:

Prdm15

Name:

PR/SET domain 15

RGD ID:

1310055

Description:

Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and promoter-specific chromatin binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II; regulation of signal transduction; and regulation of stem cell division. Predicted to be located in nuclear body. Predicted to be active in nucleus. Orthologous to human PRDM15 (PR/SET domain 15); PARTICIPATES IN forkhead class A signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; amphetamine; azoxystrobin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC304054; PR domain 15; PR domain containing 15; PR domain zinc finger protein 15

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRDM15 (PR/SET domain 15)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Prdm15 (PR domain containing 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prdm15 (PR/SET domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRDM15 (PR/SET domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRDM15 (PR/SET domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prdm15 (PR/SET domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRDM15 (PR/SET domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRDM15 (PR/SET domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prdm15 (PR/SET domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Prdm15 (PR/SET domain 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PRDM15 (PR/SET domain 15)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Prdm15 (PR domain containing 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prdm15 (PR domain containing 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	prdm15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	50,633,973 - 50,691,624 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	50,633,973 - 50,691,823 (-)	Ensembl				GRCr8
mRatBN7.2	11	37,164,608 - 37,225,172 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	37,165,575 - 37,222,207 (-)	Ensembl				mRatBN7.2
Dahl_SR_JrHsd	11	52,560,297 - 52,617,957 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	11	50,792,713 - 50,850,377 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	11	51,711,874 - 51,769,534 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	11	50,437,204 - 50,494,864 (-)	NCBI		F344_StmMcwi
Rnor_6.0	11	38,294,040 - 38,354,648 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	38,293,875 - 38,351,184 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	41,804,204 - 41,860,903 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	37,809,830 - 37,867,635 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	37,049,084 - 37,109,577 (-)	NCBI		Celera
RGSC_v3.1	11	37,870,071 - 37,928,533 (-)	NCBI
Cytogenetic Map	11	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pervasive developmental disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,4-dinitrotoluene (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (EXP)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

crocidolite asbestos (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

finasteride (EXP)

flutamide (EXP)

FR900359 (ISO)

gallic acid (ISO)

glafenine (EXP)

glyphosate (EXP)

imidacloprid (EXP)

maneb (ISO)

methapyrilene (ISO)

nimesulide (EXP)

nitrofen (EXP)

ozone (ISO)

paracetamol (EXP)

paraquat (ISO)

potassium dichromate (ISO)

sulindac (EXP)

thiabendazole (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of MAPK cascade (IEA,ISO)

positive regulation of canonical Wnt signaling pathway (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of gene expression (IBA)

regulation of stem cell division (IEA,ISO)

Cellular Component

nuclear body (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

metal ion binding (IEA)

promoter-specific chromatin binding (IEA,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA,ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

forkhead class A signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15904895	PMID:28740264

Genomics

Comparative Map Data

Prdm15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	50,633,973 - 50,691,624 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	50,633,973 - 50,691,823 (-)	Ensembl				GRCr8
mRatBN7.2	11	37,164,608 - 37,225,172 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	37,165,575 - 37,222,207 (-)	Ensembl				mRatBN7.2
Dahl_SR_JrHsd	11	52,560,297 - 52,617,957 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	11	50,792,713 - 50,850,377 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	11	51,711,874 - 51,769,534 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	11	50,437,204 - 50,494,864 (-)	NCBI		F344_StmMcwi
Rnor_6.0	11	38,294,040 - 38,354,648 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	38,293,875 - 38,351,184 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	41,804,204 - 41,860,903 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	37,809,830 - 37,867,635 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	37,049,084 - 37,109,577 (-)	NCBI		Celera
RGSC_v3.1	11	37,870,071 - 37,928,533 (-)	NCBI
Cytogenetic Map	11	q12	NCBI

PRDM15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	41,798,225 - 41,879,344 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	41,798,225 - 41,879,482 (-)	Ensembl			hg38	GRCh38
GRCh37	21	43,218,385 - 43,299,453 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	42,091,454 - 42,172,660 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	42,094,393 - 42,172,660	NCBI
Celera	21	28,368,174 - 28,447,099 (-)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	28,638,181 - 28,644,572 (-)	NCBI		HuRef
HuRef	21	28,648,979 - 28,667,142 (-)	NCBI		HuRef
HuRef	21	28,673,524 - 28,716,923 (-)	NCBI		HuRef
CHM1_1	21	42,779,228 - 42,860,431 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	40,188,592 - 40,269,664 (-)	NCBI		T2T-CHM13v2.0

Prdm15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	97,592,720 - 97,653,076 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	97,592,667 - 97,653,050 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	97,791,467 - 97,851,875 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	97,791,467 - 97,851,850 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	98,013,074 - 98,072,834 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	97,946,383 - 98,006,787 (-)	NCBI		MGSCv36	mm8
Celera	16	98,842,778 - 98,902,764 (-)	NCBI		Celera
Cytogenetic Map	16	C4	NCBI
cM Map	16	57.66	NCBI

Prdm15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	39,680,770 - 39,712,104 (+)	Ensembl
ChiLan1.0	NW_004955407	39,680,757 - 39,714,917 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRDM15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	37,868,927 - 37,950,136 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	32,723,230 - 32,804,330 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	28,122,173 - 28,202,837 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	41,447,858 - 41,526,020 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	41,447,858 - 41,526,888 (-)	Ensembl			panPan2	panpan1.1

PRDM15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	36,220,532 - 36,285,752 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	36,223,507 - 36,286,699 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	35,372,966 - 35,437,691 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	35,737,890 - 35,802,685 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	35,738,965 - 35,802,858 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	35,631,878 - 35,696,603 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	35,611,253 - 35,676,091 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	36,105,756 - 36,170,626 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Prdm15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	35,491,630 - 35,536,181 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	1,940,134 - 1,973,550 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	1,939,075 - 1,976,194 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRDM15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	205,173,517 - 205,241,490 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	205,174,356 - 205,241,562 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	215,499,016 - 215,567,810 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRDM15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	85,686,292 - 85,761,365 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	85,685,932 - 85,742,611 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	13,545,118 - 13,620,822 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prdm15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	28,396,485 - 28,441,450 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	28,401,163 - 28,440,597 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Prdm15
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	46,687,931 - 46,744,932 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Prdm15
288 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	138
Count of miRNA genes:	93
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000046318, ENSRNOT00000066712
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	46443168	91443168	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	35323199	55805892	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	29958996	57754989	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	26318031	55806125	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

D11Rat48

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	37,184,135 - 37,184,372 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	38,313,571 - 38,313,805	NCBI	Rnor6.0
Rnor_5.0	11	41,823,434 - 41,823,668	UniSTS	Rnor5.0
RGSC_v3.4	11	37,829,096 - 37,829,331	RGD	RGSC3.4
RGSC_v3.4	11	37,829,098 - 37,829,332	UniSTS	RGSC3.4
Celera	11	37,068,498 - 37,068,734	UniSTS
FHH x ACI Map	11	16.5799	UniSTS
FHH x ACI Map	11	16.5799	RGD
Cytogenetic Map	11	q12	UniSTS

AI449533

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	37,225,424 - 37,225,671 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	38,354,850 - 38,355,096	NCBI	Rnor6.0
Rnor_5.0	11	41,864,713 - 41,864,959	UniSTS	Rnor5.0
RGSC_v3.4	11	37,870,796 - 37,871,042	UniSTS	RGSC3.4
Celera	11	37,109,779 - 37,110,025	UniSTS
Cytogenetic Map	11	q12	UniSTS

RH131649

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	37,225,391 - 37,225,598 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	38,354,817 - 38,355,023	NCBI	Rnor6.0
Rnor_5.0	11	41,864,680 - 41,864,886	UniSTS	Rnor5.0
RGSC_v3.4	11	37,870,763 - 37,870,969	UniSTS	RGSC3.4
Celera	11	37,109,746 - 37,109,952	UniSTS
RH 3.4 Map	11	263.9	UniSTS
Cytogenetic Map	11	q12	UniSTS

RH132416

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	37,165,640 - 37,165,851 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	38,295,073 - 38,295,283	NCBI	Rnor6.0
Rnor_5.0	11	41,805,237 - 41,805,447	UniSTS	Rnor5.0
RGSC_v3.4	11	37,810,868 - 37,811,078	UniSTS	RGSC3.4
Celera	11	37,050,117 - 37,050,327	UniSTS
RH 3.4 Map	11	265.0	UniSTS
Cytogenetic Map	11	q12	UniSTS

RH137768

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	37,198,513 - 37,198,741 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	38,327,945 - 38,328,172	NCBI	Rnor6.0
Rnor_5.0	11	41,837,808 - 41,838,035	UniSTS	Rnor5.0
RGSC_v3.4	11	37,843,471 - 37,843,698	UniSTS	RGSC3.4
Celera	11	37,082,869 - 37,083,096	UniSTS
RH 3.4 Map	11	264.3	UniSTS
Cytogenetic Map	11	q12	UniSTS

UniSTS:259130

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	37,167,525 - 37,168,682 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	38,296,958 - 38,298,112	NCBI	Rnor6.0
Rnor_5.0	11	41,807,122 - 41,808,276	UniSTS	Rnor5.0
RGSC_v3.4	11	37,812,753 - 37,813,908	UniSTS	RGSC3.4
Celera	11	37,052,002 - 37,053,145	UniSTS
Cytogenetic Map	11	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	13	80	204	91	90	59	138	59	6	456	260	21	181	107	119	31	33	33

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046318 ⟹ ENSRNOP00000041592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	50,633,973 - 50,691,823 (-)	Ensembl
mRatBN7.2 Ensembl	11	37,165,575 - 37,222,207 (-)	Ensembl
Rnor_6.0 Ensembl	11	38,293,875 - 38,351,184 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114092 ⟹ ENSRNOP00000084210

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	50,633,973 - 50,691,823 (-)	Ensembl
mRatBN7.2 Ensembl	11	37,165,575 - 37,222,207 (-)	Ensembl

RefSeq Acc Id:

NM_001427299 ⟹ NP_001414228

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,589 (-)	NCBI
Dahl_SR_JrHsd	11	52,560,297 - 52,617,957 (-)	NCBI
Lyon_Normotensive	11	50,792,713 - 50,850,377 (-)	NCBI
Lyon_Hypertensive	11	51,711,874 - 51,769,534 (-)	NCBI
F344_StmMcwi	11	50,437,204 - 50,494,864 (-)	NCBI

RefSeq Acc Id:

XM_017598097 ⟹ XP_017453586

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,624 (-)	NCBI
mRatBN7.2	11	37,167,256 - 37,225,172 (-)	NCBI
Rnor_6.0	11	38,294,040 - 38,354,648 (-)	NCBI

Sequence:

show sequence

CACTGCCAGGTACAAGAAAGATGTACTAATACCTGTGCTGACCCTCATTCTGGGCAATGGACTT
TGCTCCTCGTGTTCTATGTTTTGTGTGCTATTGAGCACCACCCAGGCCGCGCTGGGGCTAAAAT
TTACTATAGGACTTTAGCAGTTCCAGGGAGTTCCTGGGGGATGATGAATTGTGGATGCTGCAAG
CCAGAATCTGTCCTGGCCCAGGTCCCCAAAGCAGTGCCCGATATGGCCCGTGAGAGACGTGTGT
GGGGAATGAAGGCAGGGGGACATTCATCGGTTTGGGCCCTTGCTGTCCTAGCAGAGGGAACAGG
TAATAGCTTAGCTATGGGAGCCATGGGTATGTGACAGCGTTTGTGCTTTCACAGGACATGGCAG
TGGTGTCTGGGGTAGGGCTGAGCAGCCTTGCTGCCTGCTGTAAGCATCTCCCCCTCCTCGTGGT
CTTCAGTGTCTGTGGTCTCCTTCACTTTGCTCTGCCATGTGCACAAACAAAAGCATTGCATTTG
GAGAGATGCTGCATTGGGGAACCGCCAGGGAGACCATCTCGGACTTGCTTACGCTTCAGCCCTA
TTCAGCCCGCTTGCCTATGGGACAGCCCATGGGGTGGTCAGCCACTGTCATCTGCTCATCAGGA
GGAGTCAGTCACCCAAGTCAAGCCCCATCCATTTTCTGCATCGAAGGTGGCATCTACCGTGGCA
TCTGTTGCTGTGATAAAACACCCTCACGAGAAGCAATTCAGGGAAGAAAGGGTTTATTTTGGCT
CATAGTTCTAGAAGGATCAGAGTCCATAATGGCGGGAAAGGCAATTATAAGAAAAAGCATAGTA
GGCAGGAGAAGGAAGCCAGCTGGTTACTTTGTCATTCACATACAAATTCAAACAAGAAGTGAGG
CAAGGTTATAAACCCAGAAAGCCAGTGGTGCACTTCCTTCAGCAAGGCTGTACCCCTTAAAGCA
GTGGTTCTTAACCTGTGACCCCCTTTACGGGTTCAAAGACCCTTTCACAGATGCCACCTGAGAC
CACCGGAAAACAGATACTTACATTATGTTAGTAGCAAATTTACACAGAAAATTTGTTACATAAT
AGCAAAATTATAGTTATTAAGTAGCCACAAAAATACTTTTATGGTTGTGGGTCATACCATGAGG
AACTATATTAAAGGGTTGCAGTGTTGGGAAGGTTGAGAATCACTGTCTTGATCCCCCAAACAGC
AGCATCAACTGGGGATCAAGTGTTCAAATACCAGAGCCCTTGGGAAGCCTCTTTCATTCAGACC
CCAGCAGGAGTGGGGACCTTACTACTGGAGCAATGGCAGTACTCTCACTCCCAGTTCCTCAGCC
CCACATACTGCACAGGGCAAGGCAGTGATGGCAATGCCTGTATCTGGGATTGGAGTGTGTTAGG
ATTGGAGGGGCTGGGGGACTGTTGCTTTCCCTGTAGACCACCAAGGTCTGCTTTGTGCTGGCAT
CCCAAGAGGGGACTAGAAGGCCACACTGATCATAATTTACCATCTGTCCAGGCTGATCTCTGCT
GGCACCTCCAGAGGAATTCTGAACAACCCATCTTCCCTGCCAGGGTTGGTCCATATCAGCAACC
CTTAGTCATTCTAGACTCCACACATTCACTCTCAGTATCACCCCTATATTATTAGATGGGTAGG
CTCAGGCCCTGCCTTCTCAAGAAGTAGCCAGCAAAAAAGGCTCACAAGAACAGCTGCCTACCGT
GGTTAGTCCACATGTTCCTCTCTTGGGCTTAGATTCGCTGAACATAGATATTTTAGCGTATCCC
ACATTCCTGGTATCTCAAACTTCCTATCCCCTTTCCTAATTTTTCAGTTTTTCTGCTAGCTTCA
AACATCACTTATCCTTTCAGTGGCTCCCCACAATTATTTTGACCTTACAACATATCATTTGGCC
TCCTGTATTTATATTTTGCATGTATGCAAAACTAGTATCATATGGATAACACCGAAGTGCCTTG
CCAGTTCAAAAAGTAGCTGGTTTCTTGGGTCACCATTACCATGGCCTCAGTGCTTAGGCAGCTA
AATATGGTGAAAATAACATTAAGGTCACAACTTACTATGGGGGCCCTGTAGAAGCAGGGAGCCT
TGACATCGAGAGCTCTCTCTTCAAAGGAAAGTCTCTCAAGTAAGACTGCTTTCATACCCTGTTC
CAAGGCAAAGTGTGTAGCTTAGTAGGTGAAATCCATTCAGCCTCCATGTCTTCCTCAGCTCCAG
ATTTATATTGTTTTTCTTACTGTGACCTGTCAATTTTTCCTCCTGTACACAGCCTGATTTTATT
TGTACATTTAGTTCTGCTTCATACGTAGAAGCTCAAAGAGCTGGCCTTCTGGGCACTTTAGAAT
GAGCAATACCAATGAAAGTGGTATACGGGACAGTGAGATGTGTACCTGTTTTAAAGGTGTCTTG
AAGGGCAAAGATGTCCTTGTCTGCTCAGTTCACTACACTACCTCCCTCATTCTCACACACAGAC
ACACACACACACACACACACACACACACACACACACACACACACACACACACACAGCTCTAACC
CTAACTCCTCAGTCCACAAACCATCTGGCCAACTCTCATTGATCACACAGCCCTTCTCCTCAGC
TTTTATGTCCACTCGGTCCCTTGGATCCTCACAGCCTGCTTCACCAGATCTCCATACATTTTCT
TTCCTGTTCCCCATCCACATTGCCAGTTACCAACTCCGCATGCAGGAAGTCAAACATCCTCCAT
GTCTGCAACCACGAATCTTTGTCCCCGGGTTCAATTCACACAGCCGTTTCCTAGGGCCACTGTT
TACAAAGTCCCAGCTAGCTCCTACTCTACACAGTTATCCTTGACTCCCTGTTAACACAGCACGA
AGTCCCCAGCACCAGGTACAAGCACCCGGAGCCCAGGGCCCGCCCCGTCGGCCTGCACTGCGTA
CTACAACTCCCACGATGCCGCGCCACCGCCCCCCGGCTTCCGGTGCTGCGCAGTTTCCGGAGCG
GATCGCAACCCGGAGTCCGGATCCGACCCCGCTCTGCACATTCCACAGGCAGGTATCAGCAATG
GCTGAAGATGGCAGTGAGGAGATCATGTTTATCTGGTGTGAAGACTGCAGCCAGTACCATGACT
CAGAGTGTCCTGAACTGGGACCTGTGGTCATGGTCAAGGACTCCTTTGTGCTGAGCAGGGCAAG
GTCCTCCCTCCCCTCTAACCTGGAGATCAGGCGCCTGGATGACGGGGCTGAAGGTGTGTTTGCA
GTGACCCAGCTAGTCAAGCGCACACAATTTGGTCCATTTGAGTCCAGAAGGGTCGCCAAGTGGG
AGAAGGAATCTGCATTTCCTCTGAAGGTATTTCAGAAGGATGGGCATCCTGTGTGCTTTGACAC
TTCCAACGAGGATGACTGCAACTGGATGATGCTAGTGCGACCAGCACTAGAGCCTGGGCACCAG
AACCTGACAGCCTACCAGCATGGCAGTGACGTGTACTTCACCACCTCAAAGGACATTCCTGCAG
GCACTGAACTGCGTGTGTGGTATGCTGCCTTTTATGCCAAGAAGATGGACAAGCCCATGCTAAA
GCAGGCCTGCTCCAGTGTTCAGGCTGCAGGCACCCCTGAGCCCAGTGTCACTGTGGAGCCTGAG
CGTGCCCAGTGGGTGTGTAAGGTGTGTTCCAACACCTTCCTGGAGCTTCAGCTCCTGAACGAGC
ATCTCTTGGGCCACCTGGAGCAATCCAAAAGCCTCCCTGCAGGTGGCCAGCAGCAAGAGGCAGC
TTCTGAGAAGGAGCCTGATGCACCCAGGATGGAGCCTCCTACAGCAGTTGAGAGCAAGAGTATG
CAGAGTGCCACAGTCACCAAAGAGCCAAAGAAAAAGCCTCGAAGGGGGAGGAAACCCAAAGCAT
CCAAGGTTGAGCAGCCTCTGGTCATTATCAAAGACAAGGAGCCTGCAGAGCATGTGGCAGAGAT
CATAACCGAGGTCCCCCCCGATGAGCCTGTGAACGCAACACCAGATGAACGGATAATGGAGTTA
GTCTTGGGGAAGCTGGCCACCCCCACAAGTGAAGCCAGCTCAGTGCCAAAGTTCTTACATCATC
CAAGCAGCACCATTGCCCTCAAGAGGGGCTTGGTTCTGTCCAGCAGACATGGCGTCCGGCGGAA
GCTCGTTCGACAGCTGGGTGAGCATAAACGCATCCATCAGTGTGGCACCTGCAGCAAGGTCTTC
CAGAACAGCAGCAACCTGAGCCGGCACGTGCGCTCGCACGGTGAGTGCGCGCACGGTGACAAGT
TGTTTAAATGTGAGGAATGTTCGAAATTGTTCAGCCGTAAGGAAAGTCTAAAGCAACATGTTTC
CTACAAGCACAGCCGGAATGAGGTGGACGGTGAGTACCGCTACCGCTGTGGCAGCTGTGGGAAG
ACGTTCCGAATGGAGAGTGCACTGGAGTTCCACAACTGTAGGACAGATGACAAGACGTTCCAAT
GTGAGATGTGTTTCAGATTCTTCTCCACCAACAGCAACCTCTCTAAGCACAAGAAGAAACATGG
GGACAAGAAGTTTGCCTGTGAGGTCTGCAGTAAGATGTTCTACCGCAAGGATGTCATGCTGGAC
CACCAGAGGCGGCACTTGGATGGTGTGCGGCGGGTGAAGAGAGAAGACTTGGAGGCCAGCGGGG
AAAGCCTGGTTCGTTACAAGAAGGAACCTTCTGGATGTCCAGTGTGTGGCAAGGTGTTCTCTTG
CCGGAGCAACATGAACAAGCACCTGCTGACCCACGGTGACAAGAAGTACACCTGCGAGATCTGT
GGGCGCAAGTTCTTCCGAGTGGACGTACTCAGGGACCACATTCATGTCCACTTCAAGGACATCG
CGCTGATGGATGACCACCAGCGGGAGGAGTTCATTGGCAAGATTGGGATCTCCTCAGAGGAGAA
CGATGACAACTCTGATGAGAGTGCAGATTCTGAGCCACACAAGTACAGCTGCAAGAGGTGCCAG
CTCACTTTCGGCCGTGGGAAGGAATACCTGAAGCACATCATGGAGGTTCACAAGGAGAAGGGCC
ATGGCTGCAGCATCTGCCACCGACGCTTTGCACTCAAGGCTACTTACCACGCCCACATGGTCAT
CCACCGAGAGAACCTGCCTGACCCCAACGTGCAGAAGTACATTCACCCCTGCGAGATCTGTGGG
CGGATCTTCAACAGCATCGGGAACTTGGAGCGCCACAAACTCATCCACACAGGTGTGAAAAGCC
ATGCCTGTGAGCAGTGTGGAAAGTCCTTTGCCAGGAAGGACATGCTGAAAGAGCACATGCGTGT
GCATGACAACATCCGGGAGTACCTGTGTGCCGAATGCGGGAAAGGTATGAAGACCAAGCATGCA
CTACGCCACCATATGAAGCTGCACAAAGGCATCAAGGAGTATGAGTGCAAGGAATGTCACCGCA
AGTTTGCACAGAAGGTCAACATGCTCAAGCACTACAAACGGCATACAGGAATTAAAGACTTCAT
GTGTGAGTTATGTGGGAAGACATTCAGTGAGAGGAATACAATGGAGACACACAAGCTCATCCAC
ACAGTAGGCAAGCAGTGGACTTGTTCCGTGTGTGACAAGAAGTACGTCACGGAGTACATGCTTC
AGAAACACGTACAGCTCACCCATGACAAGGTGGAAGCACAGAGCTGCCAGCTGTGTGGCACCAA
GGTGTCCACCCGGGCCTCCATGAGCAGACACATGCGGCGCAAGCACCCCGAGGTCCTCGCTGTT
CGGATTGACGATCTGGACCACCTCCCCGAGACCACCACCATCGATGCATCCTCCATCGGCATTG
TCCAGCCTGCACTGGGCCTAGAGCAGGAGGAACTGGCAGAAGGTAAGCATGGAAAGGCTGCCAA
ACGCAGCCACAAGAGAAAGCAGAAGCCAGAGGAAGAGGCAGGGGCCGCAGTGCCTGAGGACACC
ACCTTCAGCGAATACCCCGAGAAGGAGCCAGAGTTCACAGGCAGTGTGGGTGACGAGACAAACT
CTGCCGTACAGAGCATCCAGCAGGTGGTGGTGACCCTAGGGGACCCCAATGTGACTGCTCCATC
AAGCTCTGTTGGCCTAACCAACATCACCGTGACCCCCATCACCACTGCAGCTGGAACTCAGTTT
ACCAATTTACAGCCAGTGGCTGTTGGACATCTTACCAACCCTGAACGCCAGCTACAACTAGATA
ACTCCATCCTGACTGTGACCTTTGACACTGTCAGTGGCTCCGCCATGTTGCACAACCGTCAAAA
TGATGTCCAGATCCACCCACAGCCAGAAGCCACAAACCCTCAGTCAGTGGCTCACTTTATCAAC
CTCACCACCCTGGTAAACTCCATCACACCCTTGGGGAACCAGCTCAGTGAGCAGCACCCACTCA
CCTGGCGAGCTGTGCCCCAGACAGATGTACTGCAGCCGCCACAGGCCCCTGCAGCCCCGCAGCA
GGCGGTGCAACCCCAGGTCCAGAATGAGCAGCAGCAGATGTATAGCTACTGATCTGTGGCTGCA
GAACCGGCTGAGCTGCAGCCGGCGGGGGCTCTGAGGTCTTGAGGTGTTTGCTGGATACCAAACA
GGGAGGGTGTCCGCATGTCAAGATCACAGAGGTTAGCATCACAGAGTTACCTGTCCGCTTTTGG
CAAGCAGGTGCTTCTACCACGTGTTCCCCCAAGGTGGTACAGCCTGGCCAGACCATAAGTGTCA
CCCTCAGAGGTCTATAATTGTCATGGGGCTCAGGGACACAGGTAGCAGGATCCTAAAAGCAGGA
ATGATATCCCAAGGACCAGGGAGACTTGCTCTGTTTTCTTTAGCACTCCAGTGAGATACTGAAA
CATGGCTAGCCTTCTCAGGCAATGCAGACGCAAACCCAGGTTTATCCTTGCTCCTGGATTCTCA
AGCAGGGAGAAGTTAAGTAACTCTTCTTCTGAAGTCTCAGTTCATATATCACAGAGCTGTGGCC
CGAGGCCTCCTGTAGGAAGTATCTTGAGGCCCCCAGCTCAGGCACAAAAGACATCTTGGGAACA
TCTATTGATTGATTTTTATAAACAGTCTGTTTTATTTCATAACCACGTTATGTATTATGGCCCT
CTTGTGGCGTATTGATTTCTATTATTTTAATATGATAAAGTCGTTTGCACTGTAGGGTGTTGGT
CCCTGTCCAGTTGTGCACAGATGCCTTTCGAGAGGCCCCACACAGTTGTGTGCAAAGTGAGCCC
TCACGCTTGAATCCCAGTGCTCCTCCAGAGCTATCTCAGGACTCTGCCATCTACACATGTGTCA
CGGTGCAGCGTAGCCACACCCTGAGTGAAGGATGGGGAGTGAACCCATGTCTTCTTTCTGTGTA
AGCCTTAATTCCAAAGGTGGCTGTATCTAAAGACCAATTTCCTATGAAATGGAGAGGTTCAGCT
CTACAGGAGAGAAGCGTAGCTAGTGACTTAAGAAACCTGAGAGGTGCTTTCCTGTGGCGGTGAG
GGCAGAAGAGGTCATCATGACAGTGGATTTAAACTGGCCACACCCAGCTCTGAGGGGAGCATGG
CTAGCACAGACCTGTGCTGTCCCAGTGGCAACAGGCCAGGCTGCCATCATAGGTCCACAGCCCA
GCCAGGGACACGGAGAGGCGAGGTGAGGAGAGAGTTTGGTCTCACTCTCATCAGATTTTAATGT
CATACAAAAGAAGAACTTAAAGATGAACTTGCCTTACTTTGTCCTTGGTCCCATGTTCCCTGGA
TGTATTCATATGTGGGCAGCCATCCTGCAGAGATGGCTACTAACCAGCAGTGGACAAGGCAAGT
TGCAGTCAGCCTGATGTCAGACAAGATGCCACTTTCTCAATACCTCATTCCAGAGAGCAAGCTT
TGAGGATGAGGCTGGAGCTTGTGTTTCACATTTGGAGCATAAGGAGGAGGTGACACTGGAGGAC
AGGTCTGCAGGTCTACGGTCACCTGGCCACACCCTCTCCACACCCACACAGGCCAGTCCCACCT
CTTGGCAGATGGCACGCTGGGAATTCGTGGACGTTTTAATTTATGACAGCTGTTTTTATCTTAT
TTATGTGTATAATTAACTACTTTGTACACAGTACCCTAATGAAATGAACTGTTTCATTCGGCCT
AGGGGTGAACTGTTTTCTAAAATACAGCTTTTGTTCTCCAAATAAAACTATTCCTGGAAGCTGT
GGGCAGTTCATAGTTCTACACTGTTTTTTAAAAAAATCCAACCACAATTCCTCTGCCTTTACAG
CCTCAGAGATGCCTGAGCTCAGCCCAGATGAGCACTGGGCTCAAGCAGACATCACTAGCGGTTG
ACTTCTATTCTCTTCCCACTGAAAGAAAGGCCTTTGAAATCACATTTTTATTTTTTAAAGATGT
ATTTGTGTGCCTACAGCCAGGTCGTCAGATCCTGTTGAAAGACAGAGCTTAGGTTGTACAGTCT
CTCCTGCGCCTCTGTGTGCTTAAATATACAGAGGCGTCTGCTTCCTGCTGTTGTAAGCAGGAAC
TCAGATAAAACCAGCCTTTCTCCCCAAGTGTCTGGGACACACAGTCTCACCAGTCATTGAGACA
AAAAGGTTGTTTTAGCATAGTTACAGCTATTCTGCATATAGCAACTGGATAGCAAAACAAAGGC
ATCTCCACACTCCAGGTGCCCTGCATACATAAACCATTGTTAATTGGTAGGAAGTGTTCAGGAG
TTTTGTTTTGTTTTTTTAAATCTGGTCTAAAGTGGGCATAGCTATGTGTCCAGCAAGCCCTGTG
ACTATGTCTAGGTTCACATAAATAAATGTACCAGACTTTGTTTACACCTTGTGAATGATAATGC
TATAGGGTCACATGTCATGACAGGATCAATCTTACAGTTGCAGCCTGGGTTCCATCCTCTGGGA
CGGTGTTAGCGAGTGATACATTCTCAGGGAAAGGGTCTGTACCAGGTGCCCTCTCCTGTGTCAG
GCATGAAAGCCTGCTGGAGAGTGGCCCTTCATGAAAGGCAGAGCTTTCCTCCTCCACACCATTC
TCAGTCGGTGTCCAGGCAGAGGCCATGCCCGTGGCCCCCATGGAGTCTGAGGGTTGTGGAAGGC
CGTTCTGTAACTCCGGGTGTCTCATGTCACATCTGTGTGTATGGGGGTAAATAAAGGTGCTGTG
ACCTGTGTCTCA

hide sequence

RefSeq Acc Id:

XM_017598100 ⟹ XP_017453589

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,678,696 (-)	NCBI
mRatBN7.2	11	37,167,256 - 37,209,333 (-)	NCBI
Rnor_6.0	11	38,294,040 - 38,339,031 (-)	NCBI

Sequence:

show sequence

GCCGCAGGGGCAGGGGCTTCAGGGCCCCTTTAGAATCTGGGGCTGCATGACTTCTGGTGGGAGT
GGGGTGAGGGCTGCTGAGTAGCATGGATTTGTAAGTGCTGGATTACTCTTTCCTTCACTTAGTG
TGCTTTACATTACAGAGGTGAGGGTTAAGGCAGTGCCTACTAACTTGTAGGTCTTTAGGGAGGA
CGTTTAAGAACAGTCAGGAATGACCCCATGCTGATGTAACTCCTCTCCTCCCCCAGCAGGTGCT
GTGGCTGCAGCACAGCGATGGTCTCTGTAGCTTCCTGCACCGGTGTGGCAATCTCACTCATATG
TGTGAGTTGCACGAAGCTCTCAGAGACAGTGACAGCATGGGGCTTGGCGGCTGCACAGAGCACA
TCTGGCTGAGGGAGAACGGGTATTTCAGAAGGATGGGCATCCTGTGTGCTTTGACACTTCCAAC
GAGGATGACTGCAACTGGATGATGCTAGTGCGACCAGCACTAGAGCCTGGGCACCAGAACCTGA
CAGCCTACCAGCATGGCAGTGACGTGTACTTCACCACCTCAAAGGACATTCCTGCAGGCACTGA
ACTGCGTGTGTGGTATGCTGCCTTTTATGCCAAGAAGATGGACAAGCCCATGCTAAAGCAGGCC
TGCTCCAGTGTTCAGGCTGCAGGCACCCCTGAGCCCAGTGTCACTGTGGAGCCTGAGCGTGCCC
AGTGGGTGTGTAAGGTGTGTTCCAACACCTTCCTGGAGCTTCAGCTCCTGAACGAGCATCTCTT
GGGCCACCTGGAGCAATCCAAAAGCCTCCCTGCAGGTGGCCAGCAGCAAGAGGCAGCTTCTGAG
AAGGAGCCTGATGCACCCAGGATGGAGCCTCCTACAGCAGTTGAGAGCAAGAGTATGCAGAGTG
CCACAGTCACCAAAGAGCCAAAGAAAAAGCCTCGAAGGGGGAGGAAACCCAAAGCATCCAAGGT
TGAGCAGCCTCTGGTCATTATCAAAGACAAGGAGCCTGCAGAGCATGTGGCAGAGATCATAACC
GAGGTCCCCCCCGATGAGCCTGTGAACGCAACACCAGATGAACGGATAATGGAGTTAGTCTTGG
GGAAGCTGGCCACCCCCACAAGTGAAGCCAGCTCAGTGCCAAAGTTCTTACATCATCCAAGCAG
CACCATTGCCCTCAAGAGGGGCTTGGTTCTGTCCAGCAGACATGGCGTCCGGCGGAAGCTCGTT
CGACAGCTGGGTGAGCATAAACGCATCCATCAGTGTGGCACCTGCAGCAAGGTCTTCCAGAACA
GCAGCAACCTGAGCCGGCACGTGCGCTCGCACGGTGAGTGCGCGCACGGTGACAAGTTGTTTAA
ATGTGAGGAATGTTCGAAATTGTTCAGCCGTAAGGAAAGTCTAAAGCAACATGTTTCCTACAAG
CACAGCCGGAATGAGGTGGACGGTGAGTACCGCTACCGCTGTGGCAGCTGTGGGAAGACGTTCC
GAATGGAGAGTGCACTGGAGTTCCACAACTGTAGGACAGATGACAAGACGTTCCAATGTGAGAT
GTGTTTCAGATTCTTCTCCACCAACAGCAACCTCTCTAAGCACAAGAAGAAACATGGGGACAAG
AAGTTTGCCTGTGAGGTCTGCAGTAAGATGTTCTACCGCAAGGATGTCATGCTGGACCACCAGA
GGCGGCACTTGGATGGTGTGCGGCGGGTGAAGAGAGAAGACTTGGAGGCCAGCGGGGAAAGCCT
GGTTCGTTACAAGAAGGAACCTTCTGGATGTCCAGTGTGTGGCAAGGTGTTCTCTTGCCGGAGC
AACATGAACAAGCACCTGCTGACCCACGGTGACAAGAAGTACACCTGCGAGATCTGTGGGCGCA
AGTTCTTCCGAGTGGACGTACTCAGGGACCACATTCATGTCCACTTCAAGGACATCGCGCTGAT
GGATGACCACCAGCGGGAGGAGTTCATTGGCAAGATTGGGATCTCCTCAGAGGAGAACGATGAC
AACTCTGATGAGAGTGCAGATTCTGAGCCACACAAGTACAGCTGCAAGAGGTGCCAGCTCACTT
TCGGCCGTGGGAAGGAATACCTGAAGCACATCATGGAGGTTCACAAGGAGAAGGGCCATGGCTG
CAGCATCTGCCACCGACGCTTTGCACTCAAGGCTACTTACCACGCCCACATGGTCATCCACCGA
GAGAACCTGCCTGACCCCAACGTGCAGAAGTACATTCACCCCTGCGAGATCTGTGGGCGGATCT
TCAACAGCATCGGGAACTTGGAGCGCCACAAACTCATCCACACAGGTGTGAAAAGCCATGCCTG
TGAGCAGTGTGGAAAGTCCTTTGCCAGGAAGGACATGCTGAAAGAGCACATGCGTGTGCATGAC
AACATCCGGGAGTACCTGTGTGCCGAATGCGGGAAAGGTATGAAGACCAAGCATGCACTACGCC
ACCATATGAAGCTGCACAAAGGCATCAAGGAGTATGAGTGCAAGGAATGTCACCGCAAGTTTGC
ACAGAAGGTCAACATGCTCAAGCACTACAAACGGCATACAGGAATTAAAGACTTCATGTGTGAG
TTATGTGGGAAGACATTCAGTGAGAGGAATACAATGGAGACACACAAGCTCATCCACACAGTAG
GCAAGCAGTGGACTTGTTCCGTGTGTGACAAGAAGTACGTCACGGAGTACATGCTTCAGAAACA
CGTACAGCTCACCCATGACAAGGTGGAAGCACAGAGCTGCCAGCTGTGTGGCACCAAGGTGTCC
ACCCGGGCCTCCATGAGCAGACACATGCGGCGCAAGCACCCCGAGGTCCTCGCTGTTCGGATTG
ACGATCTGGACCACCTCCCCGAGACCACCACCATCGATGCATCCTCCATCGGCATTGTCCAGCC
TGCACTGGGCCTAGAGCAGGAGGAACTGGCAGAAGGTAAGCATGGAAAGGCTGCCAAACGCAGC
CACAAGAGAAAGCAGAAGCCAGAGGAAGAGGCAGGGGCCGCAGTGCCTGAGGACACCACCTTCA
GCGAATACCCCGAGAAGGAGCCAGAGTTCACAGGCAGTGTGGGTGACGAGACAAACTCTGCCGT
ACAGAGCATCCAGCAGGTGGTGGTGACCCTAGGGGACCCCAATGTGACTGCTCCATCAAGCTCT
GTTGGCCTAACCAACATCACCGTGACCCCCATCACCACTGCAGCTGGAACTCAGTTTACCAATT
TACAGCCAGTGGCTGTTGGACATCTTACCAACCCTGAACGCCAGCTACAACTAGATAACTCCAT
CCTGACTGTGACCTTTGACACTGTCAGTGGCTCCGCCATGTTGCACAACCGTCAAAATGATGTC
CAGATCCACCCACAGCCAGAAGCCACAAACCCTCAGTCAGTGGCTCACTTTATCAACCTCACCA
CCCTGGTAAACTCCATCACACCCTTGGGGAACCAGCTCAGTGAGCAGCACCCACTCACCTGGCG
AGCTGTGCCCCAGACAGATGTACTGCAGCCGCCACAGGCCCCTGCAGCCCCGCAGCAGGCGGTG
CAACCCCAGGTCCAGAATGAGCAGCAGCAGATGTATAGCTACTGATCTGTGGCTGCAGAACCGG
CTGAGCTGCAGCCGGCGGGGGCTCTGAGGTCTTGAGGTGTTTGCTGGATACCAAACAGGGAGGG
TGTCCGCATGTCAAGATCACAGAGGTTAGCATCACAGAGTTACCTGTCCGCTTTTGGCAAGCAG
GTGCTTCTACCACGTGTTCCCCCAAGGTGGTACAGCCTGGCCAGACCATAAGTGTCACCCTCAG
AGGTCTATAATTGTCATGGGGCTCAGGGACACAGGTAGCAGGATCCTAAAAGCAGGAATGATAT
CCCAAGGACCAGGGAGACTTGCTCTGTTTTCTTTAGCACTCCAGTGAGATACTGAAACATGGCT
AGCCTTCTCAGGCAATGCAGACGCAAACCCAGGTTTATCCTTGCTCCTGGATTCTCAAGCAGGG
AGAAGTTAAGTAACTCTTCTTCTGAAGTCTCAGTTCATATATCACAGAGCTGTGGCCCGAGGCC
TCCTGTAGGAAGTATCTTGAGGCCCCCAGCTCAGGCACAAAAGACATCTTGGGAACATCTATTG
ATTGATTTTTATAAACAGTCTGTTTTATTTCATAACCACGTTATGTATTATGGCCCTCTTGTGG
CGTATTGATTTCTATTATTTTAATATGATAAAGTCGTTTGCACTGTAGGGTGTTGGTCCCTGTC
CAGTTGTGCACAGATGCCTTTCGAGAGGCCCCACACAGTTGTGTGCAAAGTGAGCCCTCACGCT
TGAATCCCAGTGCTCCTCCAGAGCTATCTCAGGACTCTGCCATCTACACATGTGTCACGGTGCA
GCGTAGCCACACCCTGAGTGAAGGATGGGGAGTGAACCCATGTCTTCTTTCTGTGTAAGCCTTA
ATTCCAAAGGTGGCTGTATCTAAAGACCAATTTCCTATGAAATGGAGAGGTTCAGCTCTACAGG
AGAGAAGCGTAGCTAGTGACTTAAGAAACCTGAGAGGTGCTTTCCTGTGGCGGTGAGGGCAGAA
GAGGTCATCATGACAGTGGATTTAAACTGGCCACACCCAGCTCTGAGGGGAGCATGGCTAGCAC
AGACCTGTGCTGTCCCAGTGGCAACAGGCCAGGCTGCCATCATAGGTCCACAGCCCAGCCAGGG
ACACGGAGAGGCGAGGTGAGGAGAGAGTTTGGTCTCACTCTCATCAGATTTTAATGTCATACAA
AAGAAGAACTTAAAGATGAACTTGCCTTACTTTGTCCTTGGTCCCATGTTCCCTGGATGTATTC
ATATGTGGGCAGCCATCCTGCAGAGATGGCTACTAACCAGCAGTGGACAAGGCAAGTTGCAGTC
AGCCTGATGTCAGACAAGATGCCACTTTCTCAATACCTCATTCCAGAGAGCAAGCTTTGAGGAT
GAGGCTGGAGCTTGTGTTTCACATTTGGAGCATAAGGAGGAGGTGACACTGGAGGACAGGTCTG
CAGGTCTACGGTCACCTGGCCACACCCTCTCCACACCCACACAGGCCAGTCCCACCTCTTGGCA
GATGGCACGCTGGGAATTCGTGGACGTTTTAATTTATGACAGCTGTTTTTATCTTATTTATGTG
TATAATTAACTACTTTGTACACAGTACCCTAATGAAATGAACTGTTTCATTCGGCCTAGGGGTG
AACTGTTTTCTAAAATACAGCTTTTGTTCTCCAAATAAAACTATTCCTGGAAGCTGTGGGCAGT
TCATAGTTCTACACTGTTTTTTAAAAAAATCCAACCACAATTCCTCTGCCTTTACAGCCTCAGA
GATGCCTGAGCTCAGCCCAGATGAGCACTGGGCTCAAGCAGACATCACTAGCGGTTGACTTCTA
TTCTCTTCCCACTGAAAGAAAGGCCTTTGAAATCACATTTTTATTTTTTAAAGATGTATTTGTG
TGCCTACAGCCAGGTCGTCAGATCCTGTTGAAAGACAGAGCTTAGGTTGTACAGTCTCTCCTGC
GCCTCTGTGTGCTTAAATATACAGAGGCGTCTGCTTCCTGCTGTTGTAAGCAGGAACTCAGATA
AAACCAGCCTTTCTCCCCAAGTGTCTGGGACACACAGTCTCACCAGTCATTGAGACAAAAAGGT
TGTTTTAGCATAGTTACAGCTATTCTGCATATAGCAACTGGATAGCAAAACAAAGGCATCTCCA
CACTCCAGGTGCCCTGCATACATAAACCATTGTTAATTGGTAGGAAGTGTTCAGGAGTTTTGTT
TTGTTTTTTTAAATCTGGTCTAAAGTGGGCATAGCTATGTGTCCAGCAAGCCCTGTGACTATGT
CTAGGTTCACATAAATAAATGTACCAGACTTTGTTTACACCTTGTGAATGATAATGCTATAGGG
TCACATGTCATGACAGGATCAATCTTACAGTTGCAGCCTGGGTTCCATCCTCTGGGACGGTGTT
AGCGAGTGATACATTCTCAGGGAAAGGGTCTGTACCAGGTGCCCTCTCCTGTGTCAGGCATGAA
AGCCTGCTGGAGAGTGGCCCTTCATGAAAGGCAGAGCTTTCCTCCTCCACACCATTCTCAGTCG
GTGTCCAGGCAGAGGCCATGCCCGTGGCCCCCATGGAGTCTGAGGGTTGTGGAAGGCCGTTCTG
TAACTCCGGGTGTCTCATGTCACATCTGTGTGTATGGGGGTAAATAAAGGTGCTGTGACCTGTG
TCTCA

hide sequence

RefSeq Acc Id:

XM_039088802 ⟹ XP_038944730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,478 (-)	NCBI
mRatBN7.2	11	37,164,608 - 37,222,093 (-)	NCBI

RefSeq Acc Id:

XM_039088803 ⟹ XP_038944731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,477 (-)	NCBI
mRatBN7.2	11	37,167,256 - 37,222,092 (-)	NCBI

RefSeq Acc Id:

XM_039088804 ⟹ XP_038944732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,476 (-)	NCBI
mRatBN7.2	11	37,167,256 - 37,222,092 (-)	NCBI

RefSeq Acc Id:

XM_039088805 ⟹ XP_038944733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,477 (-)	NCBI
mRatBN7.2	11	37,167,256 - 37,222,094 (-)	NCBI

RefSeq Acc Id:

XM_039088807 ⟹ XP_038944735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,615 (-)	NCBI
mRatBN7.2	11	37,167,256 - 37,225,172 (-)	NCBI

RefSeq Acc Id:

XM_039088808 ⟹ XP_038944736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,658,232 (-)	NCBI
mRatBN7.2	11	37,167,256 - 37,188,869 (-)	NCBI

RefSeq Acc Id:

XM_063270569 ⟹ XP_063126639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,624 (-)	NCBI

RefSeq Acc Id:

XM_063270570 ⟹ XP_063126640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,624 (-)	NCBI

RefSeq Acc Id:

XM_063270571 ⟹ XP_063126641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,475 (-)	NCBI

RefSeq Acc Id:

XM_063270572 ⟹ XP_063126642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	50,633,973 - 50,691,476 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414228	(Get FASTA)	NCBI Sequence Viewer
	XP_017453586	(Get FASTA)	NCBI Sequence Viewer
	XP_017453589	(Get FASTA)	NCBI Sequence Viewer
	XP_038944730	(Get FASTA)	NCBI Sequence Viewer
	XP_038944731	(Get FASTA)	NCBI Sequence Viewer
	XP_038944732	(Get FASTA)	NCBI Sequence Viewer
	XP_038944733	(Get FASTA)	NCBI Sequence Viewer
	XP_038944735	(Get FASTA)	NCBI Sequence Viewer
	XP_038944736	(Get FASTA)	NCBI Sequence Viewer
	XP_063126639	(Get FASTA)	NCBI Sequence Viewer
	XP_063126640	(Get FASTA)	NCBI Sequence Viewer
	XP_063126641	(Get FASTA)	NCBI Sequence Viewer
	XP_063126642	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10977	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000041592
	ENSRNOP00000041592.6
	ENSRNOP00000084210
	ENSRNOP00000084210.2

RefSeq Acc Id:	XP_017453586 ⟸ XM_017598097
- Peptide Label:	isoform X2
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRHRPPASGAAQFPERIATRSPDPTPLCTFHRQVSAMAEDGSEEIMFIWCEDCSQYHDSECPE LGPVVMVKDSFVLSRARSSLPSNLEIRRLDDGAEGVFAVTQLVKRTQFGPFESRRVAKWEKESA FPLKVFQKDGHPVCFDTSNEDDCNWMMLVRPALEPGHQNLTAYQHGSDVYFTTSKDIPAGTELR VWYAAFYAKKMDKPMLKQACSSVQAAGTPEPSVTVEPERAQWVCKVCSNTFLELQLLNEHLLGH LEQSKSLPAGGQQQEAASEKEPDAPRMEPPTAVESKSMQSATVTKEPKKKPRRGRKPKASKVEQ PLVIIKDKEPAEHVAEIITEVPPDEPVNATPDERIMELVLGKLATPTSEASSVPKFLHHPSSTI ALKRGLVLSSRHGVRRKLVRQLGEHKRIHQCGTCSKVFQNSSNLSRHVRSHGECAHGDKLFKCE ECSKLFSRKESLKQHVSYKHSRNEVDGEYRYRCGSCGKTFRMESALEFHNCRTDDKTFQCEMCF RFFSTNSNLSKHKKKHGDKKFACEVCSKMFYRKDVMLDHQRRHLDGVRRVKREDLEASGESLVR YKKEPSGCPVCGKVFSCRSNMNKHLLTHGDKKYTCEICGRKFFRVDVLRDHIHVHFKDIALMDD HQREEFIGKIGISSEENDDNSDESADSEPHKYSCKRCQLTFGRGKEYLKHIMEVHKEKGHGCSI CHRRFALKATYHAHMVIHRENLPDPNVQKYIHPCEICGRIFNSIGNLERHKLIHTGVKSHACEQ CGKSFARKDMLKEHMRVHDNIREYLCAECGKGMKTKHALRHHMKLHKGIKEYECKECHRKFAQK VNMLKHYKRHTGIKDFMCELCGKTFSERNTMETHKLIHTVGKQWTCSVCDKKYVTEYMLQKHVQ LTHDKVEAQSCQLCGTKVSTRASMSRHMRRKHPEVLAVRIDDLDHLPETTTIDASSIGIVQPAL GLEQEELAEGKHGKAAKRSHKRKQKPEEEAGAAVPEDTTFSEYPEKEPEFTGSVGDETNSAVQS IQQVVVTLGDPNVTAPSSSVGLTNITVTPITTAAGTQFTNLQPVAVGHLTNPERQLQLDNSILT VTFDTVSGSAMLHNRQNDVQIHPQPEATNPQSVAHFINLTTLVNSITPLGNQLSEQHPLTWRAV PQTDVLQPPQAPAAPQQAVQPQVQNEQQQMYSY hide sequence

RefSeq Acc Id:	XP_017453589 ⟸ XM_017598100
- Peptide Label:	isoform X10
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMLVRPALEPGHQNLTAYQHGSDVYFTTSKDIPAGTELRVWYAAFYAKKMDKPMLKQACSSVQA AGTPEPSVTVEPERAQWVCKVCSNTFLELQLLNEHLLGHLEQSKSLPAGGQQQEAASEKEPDAP RMEPPTAVESKSMQSATVTKEPKKKPRRGRKPKASKVEQPLVIIKDKEPAEHVAEIITEVPPDE PVNATPDERIMELVLGKLATPTSEASSVPKFLHHPSSTIALKRGLVLSSRHGVRRKLVRQLGEH KRIHQCGTCSKVFQNSSNLSRHVRSHGECAHGDKLFKCEECSKLFSRKESLKQHVSYKHSRNEV DGEYRYRCGSCGKTFRMESALEFHNCRTDDKTFQCEMCFRFFSTNSNLSKHKKKHGDKKFACEV CSKMFYRKDVMLDHQRRHLDGVRRVKREDLEASGESLVRYKKEPSGCPVCGKVFSCRSNMNKHL LTHGDKKYTCEICGRKFFRVDVLRDHIHVHFKDIALMDDHQREEFIGKIGISSEENDDNSDESA DSEPHKYSCKRCQLTFGRGKEYLKHIMEVHKEKGHGCSICHRRFALKATYHAHMVIHRENLPDP NVQKYIHPCEICGRIFNSIGNLERHKLIHTGVKSHACEQCGKSFARKDMLKEHMRVHDNIREYL CAECGKGMKTKHALRHHMKLHKGIKEYECKECHRKFAQKVNMLKHYKRHTGIKDFMCELCGKTF SERNTMETHKLIHTVGKQWTCSVCDKKYVTEYMLQKHVQLTHDKVEAQSCQLCGTKVSTRASMS RHMRRKHPEVLAVRIDDLDHLPETTTIDASSIGIVQPALGLEQEELAEGKHGKAAKRSHKRKQK PEEEAGAAVPEDTTFSEYPEKEPEFTGSVGDETNSAVQSIQQVVVTLGDPNVTAPSSSVGLTNI TVTPITTAAGTQFTNLQPVAVGHLTNPERQLQLDNSILTVTFDTVSGSAMLHNRQNDVQIHPQP EATNPQSVAHFINLTTLVNSITPLGNQLSEQHPLTWRAVPQTDVLQPPQAPAAPQQAVQPQVQN EQQQMYSY hide sequence

Ensembl Acc Id:

ENSRNOP00000041592 ⟸ ENSRNOT00000046318

RefSeq Acc Id:	XP_038944730 ⟸ XM_039088802
- Peptide Label:	isoform X1
- UniProtKB:	D3ZQ99 (UniProtKB/TrEMBL), A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944735 ⟸ XM_039088807
- Peptide Label:	isoform X1
- UniProtKB:	D3ZQ99 (UniProtKB/TrEMBL), A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944733 ⟸ XM_039088805
- Peptide Label:	isoform X5
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944732 ⟸ XM_039088804
- Peptide Label:	isoform X6
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944731 ⟸ XM_039088803
- Peptide Label:	isoform X3
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944736 ⟸ XM_039088808
- Peptide Label:	isoform X11

Ensembl Acc Id:

ENSRNOP00000084210 ⟸ ENSRNOT00000114092

RefSeq Acc Id:	XP_063126640 ⟸ XM_063270570
- Peptide Label:	isoform X7
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126639 ⟸ XM_063270569
- Peptide Label:	isoform X4
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414228 ⟸ NM_001427299
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126642 ⟸ XM_063270572
- Peptide Label:	isoform X9
- UniProtKB:	A6IQH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126641 ⟸ XM_063270571
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZYR1 (UniProtKB/TrEMBL), A6IQH4 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type SET

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQ99-F1-model_v2	AlphaFold	D3ZQ99	1-1148	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310055	AgrOrtholog
BioCyc Gene	G2FUF-21675	BioCyc
Ensembl Genes	ENSRNOG00000001620	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000046318	ENTREZGENE
	ENSRNOT00000046318.7	UniProtKB/TrEMBL
	ENSRNOT00000114092	ENTREZGENE
	ENSRNOT00000114092.2	UniProtKB/TrEMBL
Gene3D-CATH	2.170.270.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	PRDM15_PR-SET	UniProtKB/TrEMBL
	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
NCBI Gene	304054	ENTREZGENE
PANTHER	FI01424P	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 672-RELATED	UniProtKB/TrEMBL
Pfam	PRDM2_PR	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_4	UniProtKB/TrEMBL
	zf-C2H2_PRDM15	UniProtKB/TrEMBL
PhenoGen	Prdm15	PhenoGen
PROSITE	SET	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001620	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I5ZYR1	ENTREZGENE, UniProtKB/TrEMBL
	A6IQH4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZQ99	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-27	Prdm15	PR/SET domain 15	Prdm15	PR domain 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-03	Prdm15	PR domain 15	Prdm15	PR domain containing 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Prdm15	PR domain containing 15	Prdm15_predicted	PR domain containing 15 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Prdm15_predicted	PR domain containing 15 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)