Rad23a (RAD23 nucleotide excision repair protein A) - Rat Genome Database

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Gene: Rad23a (RAD23 nucleotide excision repair protein A) Rattus norvegicus
Analyze
Symbol: Rad23a
Name: RAD23 nucleotide excision repair protein A (Ensembl:RAD23 homolog A, nucleotide excision repair protein)
RGD ID: 1309899
Description: Predicted to enable several functions, including enzyme binding activity; histone H4K20 demethylase activity; and proteasome binding activity. Predicted to be involved in several processes, including positive regulation of proteasomal ubiquitin-dependent protein catabolic process; positive regulation of viral genome replication; and protein destabilization. Predicted to act upstream of or within UV-damage excision repair and nucleotide-excision repair. Predicted to be located in Golgi apparatus and nucleus. Predicted to be part of protein-containing complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human RAD23A (RAD23 nucleotide excision repair protein A); PARTICIPATES IN nucleotide excision repair pathway; Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH (+)-pilocarpine; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361381; RAD23 homolog A; RAD23 homolog A (S. cerevisiae); RAD23 homolog A, nucleotide excision repair protein; RAD23a homolog (S. cerevisiae); UV excision repair protein RAD23 homolog A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,219,235 - 40,225,543 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1940,219,636 - 40,225,543 (+)EnsemblGRCr8
mRatBN7.21923,313,563 - 23,320,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,314,797 - 23,320,695 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1930,137,698 - 30,143,550 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,792,060 - 30,797,910 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,014,743 - 33,020,595 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1934,050,743 - 34,056,654 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1932,174,514 - 32,180,425 (+)NCBILyon_Normotensive
Lyon_Hypertensive1934,048,758 - 34,054,676 (+)NCBILyon_Hypertensive
F344_StmMcwi1931,761,167 - 31,767,017 (+)NCBIF344_StmMcwi
Rnor_6.01925,949,488 - 25,956,677 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,949,490 - 25,955,391 (-)Ensemblrn6Rnor6.0
Rnor_5.01936,925,111 - 36,931,350 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41924,971,070 - 24,976,901 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1922,871,740 - 22,877,567 (+)NCBICelera
RGSC_v3.11924,975,895 - 24,981,725 (+)NCBI
Cytogenetic Map19q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
acrolein  (ISO)
alpha-pinene  (ISO)
amphibole asbestos  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
carmustine  (ISO)
chlorogenic acid  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
FR900359  (ISO)
gamma-hexachlorocyclohexane  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydroxyurea  (ISO)
indirubin-3'-monoxime  (ISO)
ivermectin  (ISO)
kainic acid  (EXP)
kojic acid  (EXP)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (EXP)
Osajin  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP)
pentachlorophenol  (ISO)
pirinixic acid  (EXP,ISO)
Pomiferin  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
rac-lactic acid  (ISO)
Rosavin  (ISO)
rotenone  (EXP)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc pyrithione  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IBA)
nucleoplasm  (IBA,IEA,ISO)
nucleus  (IEA,ISO)
proteasome complex  (IEA)
protein-containing complex  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9372924   PMID:12643283   PMID:12815074   PMID:20178748   PMID:20614012   PMID:22871113   PMID:22970133   PMID:26296656  


Genomics

Comparative Map Data
Rad23a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,219,235 - 40,225,543 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1940,219,636 - 40,225,543 (+)EnsemblGRCr8
mRatBN7.21923,313,563 - 23,320,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,314,797 - 23,320,695 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1930,137,698 - 30,143,550 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,792,060 - 30,797,910 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,014,743 - 33,020,595 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1934,050,743 - 34,056,654 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1932,174,514 - 32,180,425 (+)NCBILyon_Normotensive
Lyon_Hypertensive1934,048,758 - 34,054,676 (+)NCBILyon_Hypertensive
F344_StmMcwi1931,761,167 - 31,767,017 (+)NCBIF344_StmMcwi
Rnor_6.01925,949,488 - 25,956,677 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,949,490 - 25,955,391 (-)Ensemblrn6Rnor6.0
Rnor_5.01936,925,111 - 36,931,350 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41924,971,070 - 24,976,901 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1922,871,740 - 22,877,567 (+)NCBICelera
RGSC_v3.11924,975,895 - 24,981,725 (+)NCBI
Cytogenetic Map19q11NCBI
RAD23A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,945,862 - 12,953,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,945,848 - 12,953,646 (+)Ensemblhg38GRCh38
GRCh371913,056,676 - 13,064,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,917,654 - 12,925,455 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341912,917,653 - 12,925,455NCBI
Celera1912,946,385 - 12,954,184 (+)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,628,527 - 12,636,354 (+)NCBIHuRef
CHM1_11913,057,148 - 13,064,977 (+)NCBICHM1_1
T2T-CHM13v2.01913,070,347 - 13,078,125 (+)NCBIT2T-CHM13v2.0
Rad23a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,561,540 - 85,567,361 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,560,648 - 85,567,294 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38884,834,927 - 84,840,652 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,834,019 - 84,840,665 (-)Ensemblmm10GRCm38
MGSCv37887,358,551 - 87,364,540 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36887,724,757 - 87,730,746 (-)NCBIMGSCv36mm8
Celera889,133,785 - 89,139,795 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.2NCBI
Rad23a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,991,479 - 32,000,250 (+)Ensembl
ChiLan1.0NW_00495541531,991,478 - 31,997,277 (+)NCBIChiLan1.0ChiLan1.0
RAD23A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,875,159 - 17,883,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,875,907 - 16,883,738 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,508,232 - 12,516,068 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,250,718 - 13,258,482 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,250,718 - 13,258,482 (+)EnsemblpanPan2panpan1.1
RAD23A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,244,330 - 49,250,058 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,241,358 - 49,250,039 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2049,116,577 - 49,122,315 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02049,761,195 - 49,766,929 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,761,198 - 49,766,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,972,391 - 48,978,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,398,877 - 49,404,610 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,641,399 - 49,647,135 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rad23a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,347,187 - 208,353,329 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,001,301 - 2,010,215 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,001,356 - 2,007,520 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD23A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,084,668 - 66,096,329 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1266,090,089 - 66,096,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,289,387 - 66,295,777 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAD23A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,625,464 - 11,633,922 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,625,458 - 11,637,419 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660748,153,390 - 8,161,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad23a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901516,855 - 523,337 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624901515,761 - 522,845 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rad23a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11715,450,582 - 15,456,617 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rad23a
40 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:38
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000004042
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)193009938347207961Rat

Markers in Region
RH134416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21923,320,451 - 23,320,658 (-)MAPPERmRatBN7.2
Rnor_6.01925,949,532 - 25,949,738NCBIRnor6.0
Rnor_5.01936,925,155 - 36,925,361UniSTSRnor5.0
RGSC_v3.41924,976,651 - 24,976,857UniSTSRGSC3.4
Celera1922,877,317 - 22,877,523UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004042   ⟹   ENSRNOP00000004042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1940,219,636 - 40,225,543 (+)Ensembl
mRatBN7.2 Ensembl1923,314,797 - 23,320,695 (+)Ensembl
Rnor_6.0 Ensembl1925,949,490 - 25,955,371 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084123   ⟹   ENSRNOP00000074265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1925,950,111 - 25,955,391 (-)Ensembl
RefSeq Acc Id: NM_001013190   ⟹   NP_001013208
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,219,662 - 40,225,543 (+)NCBI
mRatBN7.21923,314,820 - 23,320,702 (+)NCBI
Dahl_SR_JrHsd1934,050,769 - 34,056,654 (+)NCBI
Lyon_Normotensive1932,174,540 - 32,180,425 (+)NCBI
Lyon_Hypertensive1934,048,784 - 34,054,676 (+)NCBI
F344_StmMcwi1931,761,193 - 31,767,017 (+)NCBI
Rnor_6.01925,949,488 - 25,955,371 (-)NCBI
Rnor_5.01936,925,111 - 36,931,350 (-)NCBI
RGSC_v3.41924,971,070 - 24,976,901 (+)RGD
Celera1922,871,740 - 22,877,567 (+)RGD
Sequence:
RefSeq Acc Id: NM_001399101   ⟹   NP_001386030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,219,636 - 40,225,543 (+)NCBI
mRatBN7.21923,314,794 - 23,320,702 (+)NCBI
Dahl_SR_JrHsd1934,050,743 - 34,056,654 (+)NCBI
Lyon_Normotensive1932,174,514 - 32,180,425 (+)NCBI
Lyon_Hypertensive1934,048,758 - 34,054,676 (+)NCBI
F344_StmMcwi1931,761,167 - 31,767,017 (+)NCBI
RefSeq Acc Id: NM_001399102   ⟹   NP_001386031
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,219,636 - 40,225,543 (+)NCBI
mRatBN7.21923,314,794 - 23,320,702 (+)NCBI
Dahl_SR_JrHsd1934,050,743 - 34,056,654 (+)NCBI
Lyon_Normotensive1932,174,514 - 32,180,425 (+)NCBI
Lyon_Hypertensive1934,048,758 - 34,054,676 (+)NCBI
F344_StmMcwi1931,761,167 - 31,767,017 (+)NCBI
RefSeq Acc Id: XM_008772411   ⟹   XP_008770633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,219,235 - 40,224,813 (+)NCBI
mRatBN7.21923,313,563 - 23,320,702 (+)NCBI
Rnor_6.01925,950,226 - 25,956,677 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010060012
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81940,219,235 - 40,225,315 (+)NCBI
RefSeq Acc Id: NP_001013208   ⟸   NM_001013190
- Peptide Label: isoform 1
- UniProtKB: Q5XFX7 (UniProtKB/TrEMBL),   F7FJT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770633   ⟸   XM_008772411
- Peptide Label: isoform X1
- UniProtKB: F7FJT3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004042   ⟸   ENSRNOT00000004042
Ensembl Acc Id: ENSRNOP00000074265   ⟸   ENSRNOT00000084123
RefSeq Acc Id: NP_001386030   ⟸   NM_001399101
- Peptide Label: isoform 2
- UniProtKB: A6IY71 (UniProtKB/TrEMBL),   F7FJT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386031   ⟸   NM_001399102
- Peptide Label: isoform 3
- UniProtKB: F7FJT3 (UniProtKB/TrEMBL)
Protein Domains
UBA   Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K7M2-F1-model_v2 AlphaFold A0A0G2K7M2 1-362 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701060
Promoter ID:EPDNEW_R11548
Type:multiple initiation site
Name:Rad23a_1
Description:RAD23 homolog A, nucleotide excision repair protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01925,955,392 - 25,955,452EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309899 AgrOrtholog
BioCyc Gene G2FUF-6122 BioCyc
Ensembl Genes ENSRNOG00000003026 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004042 ENTREZGENE
  ENSRNOT00000004042.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.540 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114647 IMAGE-MGC_LOAD
InterPro Rad23 UniProtKB/TrEMBL
  RAD23A/B_UBA1 UniProtKB/TrEMBL
  STI1_HS_bd UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  UBA/transl_elong_EF1B_N_euk UniProtKB/TrEMBL
  Ubiquitin UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
  XPC-bd UniProtKB/TrEMBL
  XPC-bd_sf UniProtKB/TrEMBL
KEGG Report rno:361381 UniProtKB/TrEMBL
MGC_CLONE MGC:105787 IMAGE-MGC_LOAD
NCBI Gene 361381 ENTREZGENE
PANTHER UV EXCISION REPAIR PROTEIN RAD23 UniProtKB/TrEMBL
  UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A UniProtKB/TrEMBL
Pfam UBA UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
  XPC-binding UniProtKB/TrEMBL
PhenoGen Rad23a PhenoGen
PRINTS RAD23PROTEIN UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003026 RatGTEx
SMART STI1 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
  UBA_like UniProtKB/TrEMBL
  XPC-bd UniProtKB/TrEMBL
UniProt A6IY71 ENTREZGENE, UniProtKB/TrEMBL
  F7FJT3 ENTREZGENE, UniProtKB/TrEMBL
  Q5XFX7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Rad23a  RAD23 nucleotide excision repair protein A  Rad23a  RAD23 homolog A, nucleotide excision repair protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-17 Rad23a  RAD23 homolog A, nucleotide excision repair protein  Rad23a  RAD23 homolog A (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Rad23a  RAD23 homolog A (S. cerevisiae)  Rad23a  RAD23a homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Rad23a  RAD23a homolog (S. cerevisiae)  Rad23a_predicted  RAD23a homolog (S. cerevisiae) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rad23a_predicted  RAD23a homolog (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED