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Gene: Polh (DNA polymerase eta) Rattus norvegicus

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Symbol:

Polh

Name:

DNA polymerase eta

RGD ID:

1309893

Description:

Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in error-prone translesion synthesis and response to UV-C. Predicted to act upstream of or within cellular response to UV-C; postreplication repair; and pyrimidine dimer repair. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus; replication fork; and site of double-strand break. Human ortholog(s) of this gene implicated in female breast cancer and xeroderma pigmentosum variant type. Orthologous to human POLH (DNA polymerase eta); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

DNA-directed DNA polymerase eta; LOC316235; polymerase (DNA directed), eta; polymerase (DNA directed), eta (RAD 30 related); polymerase (DNA) eta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	POLH (DNA polymerase eta)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Polh (polymerase (DNA directed), eta (RAD 30 related))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Polh (DNA polymerase eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	POLH (DNA polymerase eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	POLH (DNA polymerase eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Polh (DNA polymerase eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	POLH (DNA polymerase eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	POLH (DNA polymerase eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Polh (DNA polymerase eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Polh (DNA polymerase eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	POLH (DNA polymerase eta)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Polh (polymerase (DNA directed), eta (RAD 30 related))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	polh (polymerase (DNA directed), eta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RAD30	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RAD30	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	DNApol-eta	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	polh-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	polh-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	polh	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,275,929 - 22,310,576 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	22,275,946 - 22,310,577 (+)	Ensembl				GRCr8
mRatBN7.2	9	14,778,355 - 14,813,210 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,777,888 - 14,812,723 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	23,362,765 - 23,396,678 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,425,448 - 28,459,256 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,726,187 - 26,760,102 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,163,354 - 17,198,006 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,163,354 - 17,197,132 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	16,059,843 - 16,094,495 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	10,341,975 - 10,375,983 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	12,525,667 - 12,559,453 (+)	NCBI		Celera
RGSC_v3.1	9	10,342,536 - 10,372,506 (+)	NCBI
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast cancer (ISO)

female breast cancer (ISO)

genetic disease (ISO)

xeroderma pigmentosum (ISO)

xeroderma pigmentosum variant type (ISO,ISS)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

carbamazepine (ISO)

carmustine (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

D-glucose (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

diclofenac (ISO)

dimethylselenide (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

fotemustine (ISO)

glucose (ISO)

hydrogen peroxide (ISO)

hydroquinone (ISO)

hydroxyl (ISO)

hydroxyurea (ISO)

indometacin (ISO)

leflunomide (ISO)

lomustine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

methyl methanesulfonate (ISO)

nickel atom (ISO)

Nutlin-3 (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

PhIP (ISO)

pifithrin-alpha hydrobromide (ISO)

potassium dichromate (ISO)

quercetin (ISO)

quercitrin (ISO)

resveratrol (EXP)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cellular response to UV-C (ISO)

DNA biosynthetic process (IEA)

DNA damage response (IEA)

DNA damage tolerance (IEA,ISO)

DNA repair (IEA)

DNA replication (IEA)

DNA synthesis involved in DNA repair (IEA,ISO)

error-prone translesion synthesis (IBA)

pyrimidine dimer repair (ISO)

response to radiation (IBA)

response to UV-C (IEA,ISO)

translesion synthesis (IEA,ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA)

replication fork (IBA)

site of double-strand break (IBA)

Molecular Function

damaged DNA binding (IEA)

DNA binding (IEA)

DNA-directed DNA polymerase activity (IBA,IEA,ISO)

metal ion binding (IEA)

nucleotidyltransferase activity (IEA)

transferase activity (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Familial breast cancer and DNA repair genes: Insights into known and novel susceptibility genes from the GENESIS study, and implications for multigene panel testing.	Girard E, etal., Int J Cancer. 2019 Apr 15;144(8):1962-1974. doi: 10.1002/ijc.31921. Epub 2018 Nov 13.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:10871396	PMID:17114294	PMID:17563354

Genomics

Comparative Map Data

Polh
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,275,929 - 22,310,576 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	22,275,946 - 22,310,577 (+)	Ensembl				GRCr8
mRatBN7.2	9	14,778,355 - 14,813,210 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,777,888 - 14,812,723 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	23,362,765 - 23,396,678 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,425,448 - 28,459,256 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,726,187 - 26,760,102 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,163,354 - 17,198,006 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,163,354 - 17,197,132 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	16,059,843 - 16,094,495 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	10,341,975 - 10,375,983 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	12,525,667 - 12,559,453 (+)	NCBI		Celera
RGSC_v3.1	9	10,342,536 - 10,372,506 (+)	NCBI
Cytogenetic Map	9	q12	NCBI

POLH
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	43,576,185 - 43,620,523 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	43,575,537 - 43,620,523 (+)	Ensembl			hg38	GRCh38
GRCh37	6	43,543,922 - 43,588,260 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,651,923 - 43,691,357 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	43,651,922 - 43,691,357	NCBI
Celera	6	45,095,499 - 45,139,881 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,263,100 - 43,307,435 (+)	NCBI		HuRef
CHM1_1	6	43,546,961 - 43,591,323 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,404,918 - 43,449,256 (+)	NCBI		T2T-CHM13v2.0

Polh
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,482,281 - 46,513,567 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,482,281 - 46,513,571 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	46,171,355 - 46,202,641 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,171,355 - 46,202,645 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	46,308,942 - 46,339,574 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,635,574 - 45,666,206 (-)	NCBI		MGSCv36	mm8
Celera	17	49,603,456 - 49,633,922 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.9	NCBI

Polh
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,397,141 - 9,414,042 (+)	Ensembl
ChiLan1.0	NW_004955437	9,392,484 - 9,409,186 (+)	NCBI	ChiLan1.0	ChiLan1.0

POLH
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,076,233 - 58,118,698 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	53,946,017 - 53,987,099 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,168,195 - 43,205,811 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,462,225 - 44,495,078 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,462,225 - 44,495,704 (+)	Ensembl			panPan2	panpan1.1

POLH
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,034,544 - 12,070,305 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,034,583 - 12,069,707 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,060,988 - 12,098,002 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	12,518,145 - 12,555,505 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	12,518,182 - 12,553,980 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,043,615 - 12,080,592 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,130,512 - 12,167,624 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,224,132 - 12,261,137 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Polh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	47,525,646 - 47,560,795 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	16,401,517 - 16,429,287 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	16,400,026 - 16,434,538 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POLH
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,567,788 - 38,601,790 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	38,569,211 - 38,601,794 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	44,152,173 - 44,184,314 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POLH
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,548,454 - 28,585,232 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	28,549,623 - 28,585,206 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	43,630,644 - 43,669,142 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Polh
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,062,744 - 16,080,042 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	16,061,874 - 16,083,247 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Polh
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	83,665,490 - 83,698,030 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Polh
196 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	339
Count of miRNA genes:	215
Interacting mature miRNAs:	239
Transcripts:	ENSRNOT00000026049
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	1	31250552	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	496645	45496645	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	41763315	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	6714888	29567695	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	496645	45496645	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	496645	45496645	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026049 ⟹ ENSRNOP00000026049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	22,275,946 - 22,310,577 (+)	Ensembl
mRatBN7.2 Ensembl	9	14,778,363 - 14,811,885 (+)	Ensembl
Rnor_6.0 Ensembl	9	17,163,354 - 17,197,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099257 ⟹ ENSRNOP00000083995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	22,275,968 - 22,310,571 (+)	Ensembl
mRatBN7.2 Ensembl	9	14,777,888 - 14,812,723 (+)	Ensembl

RefSeq Acc Id:

NM_001108204 ⟹ NP_001101674

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,275,929 - 22,309,707 (+)	NCBI
mRatBN7.2	9	14,778,355 - 14,812,141 (+)	NCBI
Rnor_6.0	9	17,163,354 - 17,197,132 (+)	NCBI
Rnor_5.0	9	16,059,843 - 16,094,495 (+)	NCBI
RGSC_v3.4	9	10,341,975 - 10,375,983 (+)	RGD
Celera	9	12,525,667 - 12,559,453 (+)	RGD

Sequence:

show sequence

GAAGTTCTGCGGTGCGCAGGCGCATCAACCGTCTCTCTCAGCGCGCGCGGTGCTGAACTCCTAA
TTTCCCCTGGGCTTGCTGTGGGGCGCAAACCTTCAGGCTCTGAAGGCTGTTTGCTCGGAAGGAT
CCGAGGGATAACTACTCGGTTCTGTGTCACCACAGGCAGTAAGTCTCTCTCGGAACCTACTGAC
CTGATCCTGGGAAGGCGACGACCTCGTCTAGACGCTGTCATTTTCCTTCCAGTGGACTCAGCCC
GGAACCCGGAGCATCGCTCTTGGCAGTTTGACAGGTGTCTGTCGCCTTGACTAAATGGCTCCAG
GACAGGACCTCGTGGTTGCTCTTGTAGACATGGACTGTTTTTTCGTACAAGTGGAACAGCGGCA
AAATCCTCATTTAAGGAATAAACCTTGTGCAGTTGTACAGTACAAATCATGGAAAGGTGGTGGA
ATTATTGCAGTGAGCTATGAGGCGCGTGCATTTGGCGTGACTAGAAACATGTGGGCTGATGATG
CTAAGAAGTTATGTCCAGATCTTCTGCTGGCACAAGTTCGTGAGTCCCGTGGGAAAGCTAACCT
CACCAAGTACCGGGAAGCTAGTGTTGAAGTGATGGAGATAATGTCTCACTTTGCTGTGATTGAA
CGTGCCAGCATCGATGAGGCTTATATAGATTTGACCAATGCTGTGCAGGAAAGACTTGAAAAGT
TACAAGGTCAGCCTGTCTCAGCAGACTTGTTGCCAAGCACATACATTGAAGGGCTGCCCCGAGG
CCCCGCGGTAGAGGACACTGTTGAGAAAGAGGATATTCGAAAACAAGGCTTACTTCAATGGCTT
GGTTCTCTTGAGAAAGATGATCCCACCTCTCCAGACCTACGGCTGACGGTGGGTGCGGTGATTG
TGGAAGAAATGAGAGCAGCCATAGAGAGGAAGACTGGCTTTCAGTGCTCAGCCGGGATTTCACA
CAATAAGGTCCTGGCAAAACTTGCTTGTGGACTAAACAAGCCCAACCGCCAAACCCTGGTCTCA
CATGGGTCAGTGCCACAGCTCTTCAGCCAGATGCCAATCCGTAAAATCCGAAGTCTTGGAGGAA
AGCTTGGGGCTTCTGTCATTGACGTCCTTGGGGTAGAATACATGGGTGACCTGACCCAGTTCAC
TGAAGCCCAGCTCCAGAGTCATTTTGGAGAGAAGAATGGGTCTTGGCTGTATGCCATGTGCCGA
GGCATTGAACACGAGCCAGTTAAACCCAGGCAGTTACCTAAAACTATTGGCTGTAGCAAGAACT
TCCCAGGGAAAACAGCTCTGGCTACTCGGGAACAGGTACAGTGGTGGCTTCTGCAGTTAGCCCT
GGAACTTGAGGAGAGACTAACCAAAGACCGGACTGACAATGGCAGGGTGGCCACTCAGTTGGTC
GTCAGTATTCGTGTTGAAGGAGACAAGCGTCTCAGCAGCCTGCGTCGGTGCTGTGCCCTCACTC
GCTATGACGCTCACAAGATGAGCCAGGACGCATTTGCTACTATCAGGAACTGTAACACATCTGG
AGTCCAGACTGAGTGGTCCCCTCCTCTCACAATGCTCTTCCTCTGTGCTACCAAGTTCTCTGCT
TCCGCCCCTCCAGCCTGCACGGATATCACTGTATTCCTGAGCAGTGACTCCGGTTGTCAGCCAA
AGGTGCCAGCTGCCAGCTCGGGGACCAGGACTCAGGAACCTGGCCCGGCTGCACCCACCTCTAA
AGAGGCAGCCACATCCCTAGAGTCTTTTTTTCAAAAGGCTGCCAAGAGGCAGAGAATGAGAGAG
ACTTCCTTTGTACCTCCTAAGGTGGCCGTGGAGAAGTCATCATCCAAGCCTTCCCTTCTGTTCC
AAACCAGCGGAAGCCCAGGAACTAAGTCTTTCTTCAAGCAGAAGAGTCTGCTGCTACAGCACAC
AGAGCTGAGCAATGCTGCAGCTCCATGCCCTCCACAGGCCAGCTCTGCAGTGCAACCAAGCCGT
CTCCCCACAGACCGTGCAGACAGCCGTGCTTCTTGTGAAGAAGTGTGCAAGCCGGTATCCTCTA
AAGCAGTTTCTACAGAAGTGAATGTGGCTGGGAACAGTTCTTTAGCTTACAACTCGCAGGAGAT
GACCCAAAGGGCAGCTGAGGACCAAGTGCTGTGTGAGAAGTGTGACTCCCTGGTCCCAGTATGG
GACATGCCAGAGCACCTGGACTACCATTTTGCACTGGAGTTGCAGAAGTCTTTTTTGCAGCCTT
GTACTTCAAAACCCCAGGCTGTCCCCGTGTCTCCTCAGGGCAAAAGAAATCCCAAGAGTCCTTT
GGCTTCCAGTAATAAACGCCTTAGGCCCCACGGCATGCAGACACTGGAATCATTTTTTAAGCCA
TTGACACATTAGTGCTGCCCTCGGGCTTGCAGGAGAACTTTACTGTTTTATTTCTAAGAGATGG
AACCACGTTGGTTACTCAAGGGAACTATGAAATTTTAATACATTATTTTTTTCTTTTTTCCAAT
GGGATTCTGATCCTGTTGCTGATCAAAACGTTTTTAATCTTTAGGGAGATACAGTGTCATAAAA
GGTATAAGGGACCATGGCAAACTCCCTCAGCTTCGAGCTATCGCACTTTCCTCCCTATAATATT
GACTAAGGACTAAACATCATATATTTAGGGGTGTAACGCAAAAGATTGAAACAGAAAAGGGGAA
AAATGGGGCTGGACATATGGCTCACTTGTTTAGGACAGCATGTGCGGGGCCCCATGTTCACTTC
CCAGTTTAAAGTAAGGACTATCAAGATGGGCAAGTACTAATGGCTGAAGCAACGGATTCAGCAG
TCTTCCTCAGCCATGCAGGCCTTGGGATTAAATCTCTTAGGCCTCTCTGATAAATTACATGACT
GAATTATGTATGAATCAGGTAGTAGGTTTAATGGGTAGGAAAGTAGCACACACATCTCCCCTAC
ATAAATACAAATCAACTTACTCAGTAATTGGGTCTCTAAGATGAGATTCAGTGGTTAGGAGGAA
CCATCCTTGCCTTGGATCTTAGTGTGTAGCTTCTTCCTAGATTTATAGTTTCTTAACGGCAAGA
ACTCCTGCAGTGCATTACATGGAATATGTTCTTGATGTTGTTTGAATGTGTGTAATAAAAAACT
ATAGATCTACCTGCCCATAGAGACAACAAGAATGTACTCTGAG

hide sequence

RefSeq Acc Id:

XM_006244537 ⟹ XP_006244599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,279,165 - 22,310,576 (+)	NCBI
mRatBN7.2	9	14,781,592 - 14,813,210 (+)	NCBI
Rnor_6.0	9	17,166,641 - 17,198,006 (+)	NCBI
Rnor_5.0	9	16,059,843 - 16,094,495 (+)	NCBI

Sequence:

show sequence

TTTTTTCGTACAAGTGGAACAGCGGCAAAATCCTCATTTAAGGAATAAACCTTGTGCAGTTGTA
CAGTACAAATCATGGAAAGGTGGTGGAATTATTGCAGTGAGCTATGAGGCGCGTGCATTTGGCG
TGACTAGAAACATGTGGGCTGATGATGCTAAGAAGTTATGTCCAGATCTTCTGCTGGCACAAGT
TCGTGAGTCCCGTGGGAAAGCTAACCTCACCAAAGGATATTCGAAAACAAGGCTTACTTCAATG
GCTTGGTTCTCTTGAGAAAGATGATCCCACCTCTCCAGACCTACGGCTGACGGTGGGTGCGGTG
ATTGTGGAAGAAATGAGAGCAGCCATAGAGAGGAAGACTGGCTTTCAGTGCTCAGCCGGGATTT
CACACAATAAGGTCCTGGCAAAACTTGCTTGTGGACTAAACAAGCCCAACCGCCAAACCCTGGT
CTCACATGGGTCAGTGCCACAGCTCTTCAGCCAGATGCCAATCCGTAAAATCCGAAGTCTTGGA
GGAAAGCTTGGGGCTTCTGTCATTGACGTCCTTGGGGTAGAATACATGGGTGACCTGACCCAGT
TCACTGAAGCCCAGCTCCAGAGTCATTTTGGAGAGAAGAATGGGTCTTGGCTGTATGCCATGTG
CCGAGGCATTGAACACGAGCCAGTTAAACCCAGGCAGTTACCTAAAACTATTGGCTGTAGCAAG
AACTTCCCAGGGAAAACAGCTCTGGCTACTCGGGAACAGGTACAGTGGTGGCTTCTGCAGTTAG
CCCTGGAACTTGAGGAGAGACTAACCAAAGACCGGACTGACAATGGCAGGGTGGCCACTCAGTT
GGTCGTCAGTATTCGTGTTGAAGGAGACAAGCGTCTCAGCAGCCTGCGTCGGTGCTGTGCCCTC
ACTCGCTATGACGCTCACAAGATGAGCCAGGACGCATTTGCTACTATCAGGAACTGTAACACAT
CTGGAGTCCAGACTGAGTGGTCCCCTCCTCTCACAATGCTCTTCCTCTGTGCTACCAAGTTCTC
TGCTTCCGCCCCTCCAGCCTGCACGGATATCACTGTATTCCTGAGCAGTGACTCCGGTTGTCAG
CCAAAGGTGCCAGCTGCCAGCTCGGGGACCAGGACTCAGGAACCTGGCCCGGCTGCACCCACCT
CTAAAGAGGCAGCCACATCCCTAGAGTCTTTTTTTCAAAAGGCTGCCAAGAGGCAGAGAATGAG
AGAGACTTCCTTTGTACCTCCTAAGGTGGCCGTGGAGAAGTCATCATCCAAGCCTTCCCTTCTG
TTCCAAACCAGCGGAAGCCCAGGAACTAAGTCTTTCTTCAAGCAGAAGAGTCTGCTGCTACAGC
ACACAGAGCTGAGCAATGCTGCAGCTCCATGCCCTCCACAGGCCAGCTCTGCAGTGCAACCAAG
CCGTCTCCCCACAGACCGTGCAGACAGCCGTGCTTCTTGTGAAGAAGTGTGCAAGCCGGTATCC
TCTAAAGCAGTTTCTACAGAAGTGAATGTGGCTGGGAACAGTTCTTTAGCTTACAACTCGCAGG
AGATGACCCAAAGGGCAGCTGAGGACCAAGTGCTGTGTGAGAAGTGTGACTCCCTGGTCCCAGT
ATGGGACATGCCAGAGCACCTGGACTACCATTTTGCACTGGAGTTGCAGAAGTCTTTTTTGCAG
CCTTGTACTTCAAAACCCCAGGCTGTCCCCGTGTCTCCTCAGGGCAAAAGAAATCCCAAGAGTC
CTTTGGCTTCCAGTAATAAACGCCTTAGGCCCCACGGCATGCAGACACTGGAATCATTTTTTAA
GCCATTGACACATTAGTGCTGCCCTCGGGCTTGCAGGAGAACTTTACTGTTTTATTTCTAAGAG
ATGGAACCACGTTGGTTACTCAAGGGAACTATGAAATTTTAATACATTATTTTTTTCTTTTTTC
CAATGGGATTCTGATCCTGTTGCTGATCAAAACGTTTTTAATCTTTAGGGAGATACAGTGTCAT
AAAAGGTATAAGGGACCATGGCAAACTCCCTCAGCTTCGAGCTATCGCACTTTCCTCCCTATAA
TATTGACTAAGGACTAAACATCATATATTTAGGGGTGTAACGCAAAAGATTGAAACAGAAAAGG
GGAAAAATGGGGCTGGACATATGGCTCACTTGTTTAGGACAGCATGTGCGGGGCCCCATGTTCA
CTTCCCAGTTTAAAGTAAGGACTATCAAGATGGGCAAGTACTAATGGCTGAAGCAACGGATTCA
GCAGTCTTCCTCAGCCATGCAGGCCTTGGGATTAAATCTCTTAGGCCTCTCTGATAAATTACAT
GACTGAATTATGTATGAATCAGGTAGTAGGTTTAATGGGTAGGAAAGTAGCACACACATCTCCC
CTACATAAATACAAATCAACTTACTCAGTAATTGGGTCTCTAAGATGAGATTCAGTGGTTAGGA
GGAACCATCCTTGCCTTGGATCTTAGTGTGTAGCTTCTTCCTAGATTTATAGTTTCTTAACGGC
AAGAACTCCTGCAGTGCATTACATGGAATATGTTCTTGATGTTGTTTGAATGTGTGTAATAAAA
AACTATAGATCTACCTGCCCATAGAGACAACAAGAATGTACTCTGAGGGCCTGACTTGAATATT
TTACTCCCCTAGATGTTCTATTAATGTAAAGTGCTTACCAGTGTTTTTTCTGACATTTTGGGAT
GGGTAGGCTAGACTGCTGTCACATCTATGATCCTCCTGTGTGCTGGGATGGTAGGTGCATGCCA
CCACCGCATGCCACTGTCACAGTCTAGGAGTTGAAAAGTAGTGTTATCAGGTGTTTGGTACATG
TTTGTAATCCCAACAGTTTAAAGGGTCGAGAAAGGGAAGTCATTCCGGAGTTAAAATCATCCTT
GGTGAGACAGCCTGGCCTGCATGAGGGACACGATTAGTGGTACAGTACTTGCCTAGCATGACTT
TGAAAAAGAGAAAAGTAACAAGCCAGATGTGACCATGGTACTCCTAGAATTCTGGAGATGGAGG
CAGGCAGATCTGGAATTAAATTCCAGGCCACCTTGGGCAAGACAATGAGACCTTGTCTCCAAAG
AGAAGCACTGTAGCAGAAACTCAGGTGTCTTATACACAGATCCTTAGAGATAGGTTGGAGAGTC
AGGCAGGGGTGGCTAGTGACCAGGGCGGGCACAGGCAGCAGTGTACCTTGTTTATGGGCAGAGC
TGCCCCTATTGCACAGCCTACGGGGCAGTGCTGTAAACAGTGCTGGGAAAGGTGACCTTGCCTT
CCTCAATGCTCAATGCCCCTAATAAAAGCTTTACCCACAGGCTTTTTAATAATTAAACCAATGG
TATTTTTTGTTTCGCAGGGATGGGGTTTCTCTGTGTCCTGGCTGTCCTAGAACTTGCTTTGTAG
ACCAGACTGGCCTTGAGTTCACAGAGTTCTGCTTCAAATGACAGAATTAAAAGTGCACCTTTAA
TAAAGACTGTTTTTTAAAAACTGTG

hide sequence

RefSeq Acc Id:

XM_039083534 ⟹ XP_038939462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,279,930 - 22,310,576 (+)	NCBI
mRatBN7.2	9	14,782,356 - 14,813,210 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101674	(Get FASTA)	NCBI Sequence Viewer
	XP_006244599	(Get FASTA)	NCBI Sequence Viewer
	XP_038939462	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM18802	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026049
	ENSRNOP00000026049.2
	ENSRNOP00000083995
	ENSRNOP00000083995.1

RefSeq Acc Id:

NP_001101674 ⟸ NM_001108204

- UniProtKB:

D4ADZ0 (UniProtKB/TrEMBL), A6JIT0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPGQDLVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMW
ADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAYIDLTNAVQER
LEKLQGQPVSADLLPSTYIEGLPRGPAVEDTVEKEDIRKQGLLQWLGSLEKDDPTSPDLRLTVG
AVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRS
LGGKLGASVIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAMCRGIEHEPVKPRQLPKTIGC
SKNFPGKTALATREQVQWWLLQLALELEERLTKDRTDNGRVATQLVVSIRVEGDKRLSSLRRCC
ALTRYDAHKMSQDAFATIRNCNTSGVQTEWSPPLTMLFLCATKFSASAPPACTDITVFLSSDSG
CQPKVPAASSGTRTQEPGPAAPTSKEAATSLESFFQKAAKRQRMRETSFVPPKVAVEKSSSKPS
LLFQTSGSPGTKSFFKQKSLLLQHTELSNAAAPCPPQASSAVQPSRLPTDRADSRASCEEVCKP
VSSKAVSTEVNVAGNSSLAYNSQEMTQRAAEDQVLCEKCDSLVPVWDMPEHLDYHFALELQKSF
LQPCTSKPQAVPVSPQGKRNPKSPLASSNKRLRPHGMQTLESFFKPLTH

hide sequence

RefSeq Acc Id:	XP_006244599 ⟸ XM_006244537
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GBC6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMLRSYVQIFCWHKFVSPVGKLTSPKDIRKQGLLQWLGSLEKDDPTSPDLRLTVGAVIVEEMRA AIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASV IDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAMCRGIEHEPVKPRQLPKTIGCSKNFPGKTA LATREQVQWWLLQLALELEERLTKDRTDNGRVATQLVVSIRVEGDKRLSSLRRCCALTRYDAHK MSQDAFATIRNCNTSGVQTEWSPPLTMLFLCATKFSASAPPACTDITVFLSSDSGCQPKVPAAS SGTRTQEPGPAAPTSKEAATSLESFFQKAAKRQRMRETSFVPPKVAVEKSSSKPSLLFQTSGSP GTKSFFKQKSLLLQHTELSNAAAPCPPQASSAVQPSRLPTDRADSRASCEEVCKPVSSKAVSTE VNVAGNSSLAYNSQEMTQRAAEDQVLCEKCDSLVPVWDMPEHLDYHFALELQKSFLQPCTSKPQ AVPVSPQGKRNPKSPLASSNKRLRPHGMQTLESFFKPLTH hide sequence

Ensembl Acc Id:

ENSRNOP00000026049 ⟸ ENSRNOT00000026049

RefSeq Acc Id:	XP_038939462 ⟸ XM_039083534
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000083995 ⟸ ENSRNOT00000099257

Protein Domains

UBZ3-type UmuC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ADZ0-F1-model_v2	AlphaFold	D4ADZ0	1-689	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696532

Promoter ID:

EPDNEW_R7055

Type:

multiple initiation site

Name:

Polh_1

Description:

DNA polymerase eta

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	17,163,384 - 17,163,444	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309893	AgrOrtholog
BioCyc Gene	G2FUF-28208	BioCyc
Ensembl Genes	ENSRNOG00000019195	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026049	ENTREZGENE
	ENSRNOT00000026049.5	UniProtKB/TrEMBL
	ENSRNOT00000099257	ENTREZGENE
	ENSRNOT00000099257.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1490.100	UniProtKB/TrEMBL
	3.30.70.270	UniProtKB/TrEMBL
	3.40.1170.60	UniProtKB/TrEMBL
	5' to 3' exonuclease, C-terminal subdomain	UniProtKB/TrEMBL
InterPro	DNA/RNA_pol_sf	UniProtKB/TrEMBL
	DNA_pol_Y-fam_lit_finger_sf	UniProtKB/TrEMBL
	DNA_pol_Y-fam_little_finger	UniProtKB/TrEMBL
	DNA_polymerase_eta	UniProtKB/TrEMBL
	DNA_repair_prot_UmuC-like	UniProtKB/TrEMBL
	Rev_trsase/Diguanyl_cyclase	UniProtKB/TrEMBL
	Znf_UBZ	UniProtKB/TrEMBL
KEGG Report	rno:316235	UniProtKB/TrEMBL
NCBI Gene	316235	ENTREZGENE
PANTHER	DNA POLYMERASE ETA	UniProtKB/TrEMBL
	DNA POLYMERASE ETA	UniProtKB/TrEMBL
Pfam	IMS	UniProtKB/TrEMBL
	IMS_C	UniProtKB/TrEMBL
	POLH-Rev1_HhH	UniProtKB/TrEMBL
	zf_UBZ	UniProtKB/TrEMBL
PhenoGen	Polh	PhenoGen
PIRSF	DPol_eta	UniProtKB/TrEMBL
PROSITE	UMUC	UniProtKB/TrEMBL
	ZF_UBZ3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019195	RatGTEx
Superfamily-SCOP	DNA_pol_Y-fam_little_finger	UniProtKB/TrEMBL
	SSF56672	UniProtKB/TrEMBL
UniProt	A0A8I6GBC6	ENTREZGENE, UniProtKB/TrEMBL
	A6JIT0	ENTREZGENE, UniProtKB/TrEMBL
	D4ADZ0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-21	Polh	DNA polymerase eta	Polh	polymerase (DNA) eta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-03-09	Polh	polymerase (DNA) eta	Polh	polymerase (DNA directed), eta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-08-29	Polh	polymerase (DNA directed), eta	Polh	polymerase (DNA directed), eta (RAD 30 related)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Polh	polymerase (DNA directed), eta (RAD 30 related)	Polh_predicted	polymerase (DNA directed), eta (RAD 30 related) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Polh_predicted	polymerase (DNA directed), eta (RAD 30 related) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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