Anks1a (ankyrin repeat and sterile alpha motif domain containing 1A) - Rat Genome Database

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Gene: Anks1a (ankyrin repeat and sterile alpha motif domain containing 1A) Rattus norvegicus
Analyze
Symbol: Anks1a
Name: ankyrin repeat and sterile alpha motif domain containing 1A
RGD ID: 1309183
Description: Predicted to enable ephrin receptor binding activity. Predicted to be involved in ephrin receptor signaling pathway; neuron remodeling; and substrate-dependent cell migration. Predicted to act upstream of or within negative regulation of ubiquitin-dependent protein catabolic process and regulation of ephrin receptor signaling pathway. Predicted to be located in neuron projection. Predicted to be active in cytosol. Orthologous to human ANKS1A (ankyrin repeat and sterile alpha motif domain containing 1A); INTERACTS WITH 6-propyl-2-thiouracil; aconitine; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Anks1; ankyrin repeat and SAM domain containing 1; ankyrin repeat and SAM domain-containing protein 1A; LOC309639
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,965,421 - 6,118,875 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl205,965,028 - 6,118,875 (+)EnsemblGRCr8
mRatBN7.2205,963,658 - 6,117,139 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,963,678 - 6,117,148 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx206,676,254 - 6,829,740 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,038,050 - 6,191,557 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,517,744 - 6,671,160 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,484,550 - 7,636,498 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,484,550 - 7,636,497 (+)Ensemblrn6Rnor6.0
Rnor_5.0209,686,580 - 9,840,939 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4206,121,316 - 6,274,822 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera207,524,771 - 7,677,018 (+)NCBICelera
RGSC_v3.1206,121,537 - 6,273,689 (+)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17875921   PMID:20100865  


Genomics

Comparative Map Data
Anks1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,965,421 - 6,118,875 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl205,965,028 - 6,118,875 (+)EnsemblGRCr8
mRatBN7.2205,963,658 - 6,117,139 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,963,678 - 6,117,148 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx206,676,254 - 6,829,740 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,038,050 - 6,191,557 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,517,744 - 6,671,160 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,484,550 - 7,636,498 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,484,550 - 7,636,497 (+)Ensemblrn6Rnor6.0
Rnor_5.0209,686,580 - 9,840,939 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4206,121,316 - 6,274,822 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera207,524,771 - 7,677,018 (+)NCBICelera
RGSC_v3.1206,121,537 - 6,273,689 (+)NCBI
Cytogenetic Map20p12NCBI
ANKS1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38634,889,255 - 35,097,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl634,889,243 - 35,091,421 (+)Ensemblhg38GRCh38
GRCh37634,857,032 - 35,059,183 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36634,965,016 - 35,167,168 (+)NCBIBuild 36Build 36hg18NCBI36
Celera636,411,475 - 36,613,603 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef634,579,837 - 34,781,340 (+)NCBIHuRef
CHM1_1634,859,101 - 35,061,139 (+)NCBICHM1_1
T2T-CHM13v2.0634,712,070 - 34,920,800 (+)NCBIT2T-CHM13v2.0
Anks1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,128,273 - 28,281,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,128,280 - 28,281,749 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381727,909,304 - 28,062,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,909,306 - 28,062,775 (+)Ensemblmm10GRCm38
MGSCv371728,046,285 - 28,199,582 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361727,636,929 - 27,790,226 (+)NCBIMGSCv36mm8
Celera1728,462,415 - 28,615,993 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.6NCBI
Anks1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,916,598 - 3,070,771 (+)Ensembl
ChiLan1.0NW_0049554372,916,598 - 3,070,771 (+)NCBIChiLan1.0ChiLan1.0
ANKS1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2549,356,394 - 49,559,747 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1645,223,781 - 45,427,235 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0634,450,695 - 34,653,881 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1635,613,582 - 35,750,581 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl635,548,124 - 35,776,185 (+)EnsemblpanPan2panpan1.1
ANKS1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,095,394 - 4,274,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,095,490 - 4,272,654 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha124,110,661 - 4,289,686 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0124,431,356 - 4,611,477 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,431,333 - 4,611,277 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,091,532 - 4,270,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,172,585 - 4,351,607 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,272,622 - 4,451,697 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Anks1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494639,759,615 - 39,865,169 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647624,092,759 - 24,200,612 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647624,093,838 - 24,200,611 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKS1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,812,920 - 30,995,360 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1730,812,925 - 30,995,369 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,661,335 - 35,766,115 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKS1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11737,036,665 - 37,229,906 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1737,036,066 - 37,155,596 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604434,804,936 - 34,999,631 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anks1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475422,309,812 - 22,463,170 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475422,306,363 - 22,463,273 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Anks1a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1185,801,131 - 5,949,787 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Anks1a
1327 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:161
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000044395
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH134403  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2206,116,841 - 6,117,047 (+)MAPPERmRatBN7.2
Rnor_6.0207,636,201 - 7,636,406NCBIRnor6.0
Rnor_5.0209,840,642 - 9,840,847UniSTSRnor5.0
RGSC_v3.4206,274,526 - 6,274,731UniSTSRGSC3.4
Celera207,676,722 - 7,676,927UniSTS
RH 3.4 Map2074.84UniSTS
Cytogenetic Map20p12UniSTS
RH139847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2206,058,932 - 6,059,143 (+)MAPPERmRatBN7.2
Rnor_6.0207,578,290 - 7,578,500NCBIRnor6.0
Rnor_5.0209,782,452 - 9,782,662UniSTSRnor5.0
RGSC_v3.4206,216,589 - 6,216,799UniSTSRGSC3.4
Celera207,618,813 - 7,619,023UniSTS
RH 3.4 Map2059.8UniSTS
Cytogenetic Map20p12UniSTS
AW529418  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2206,075,618 - 6,075,785 (+)MAPPERmRatBN7.2
Rnor_6.0207,594,978 - 7,595,144NCBIRnor6.0
Rnor_5.0209,799,140 - 9,799,306UniSTSRnor5.0
RGSC_v3.4206,233,277 - 6,233,443UniSTSRGSC3.4
Celera207,635,497 - 7,635,663UniSTS
RH 3.4 Map2061.5UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 14 100 253 91 90 59 200 59 6 578 350 30 233 139 154 31 51 51

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000044395   ⟹   ENSRNOP00000048981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,965,443 - 6,118,875 (+)Ensembl
mRatBN7.2 Ensembl205,963,678 - 6,117,138 (+)Ensembl
Rnor_6.0 Ensembl207,484,550 - 7,636,497 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081604   ⟹   ENSRNOP00000072237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,965,028 - 6,118,875 (+)Ensembl
mRatBN7.2 Ensembl205,963,678 - 6,117,148 (+)Ensembl
Rnor_6.0 Ensembl207,484,800 - 7,636,497 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107130   ⟹   ENSRNOP00000094383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,965,439 - 6,118,874 (+)Ensembl
mRatBN7.2 Ensembl205,963,678 - 6,117,148 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000152658   ⟹   ENSRNOP00000108273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl206,021,067 - 6,116,636 (+)Ensembl
RefSeq Acc Id: NM_001107613   ⟹   NP_001101083
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,439 - 6,118,874 (+)NCBI
mRatBN7.2205,963,678 - 6,117,138 (+)NCBI
Rnor_6.0207,484,550 - 7,636,497 (+)NCBI
Rnor_5.0209,686,580 - 9,840,939 (+)NCBI
RGSC_v3.4206,121,316 - 6,274,822 (+)RGD
Celera207,524,771 - 7,677,018 (+)RGD
Sequence:
RefSeq Acc Id: NM_001414943   ⟹   NP_001401872
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,443 - 6,118,875 (+)NCBI
mRatBN7.2205,963,682 - 6,117,139 (+)NCBI
RefSeq Acc Id: XM_006256193   ⟹   XP_006256255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,421 - 6,118,871 (+)NCBI
mRatBN7.2205,963,658 - 6,117,139 (+)NCBI
Rnor_6.0207,484,574 - 7,636,498 (+)NCBI
Rnor_5.0209,686,580 - 9,840,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256195   ⟹   XP_006256257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,421 - 6,118,871 (+)NCBI
mRatBN7.2205,963,658 - 6,117,139 (+)NCBI
Rnor_6.0207,484,555 - 7,636,498 (+)NCBI
Rnor_5.0209,686,580 - 9,840,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256196   ⟹   XP_006256258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,421 - 6,118,871 (+)NCBI
mRatBN7.2205,963,658 - 6,117,139 (+)NCBI
Rnor_6.0207,484,574 - 7,636,498 (+)NCBI
Rnor_5.0209,686,580 - 9,840,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256197   ⟹   XP_006256259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,421 - 6,118,871 (+)NCBI
mRatBN7.2205,963,658 - 6,117,139 (+)NCBI
Rnor_6.0207,484,555 - 7,636,498 (+)NCBI
Rnor_5.0209,686,580 - 9,840,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098686   ⟹   XP_038954614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,421 - 6,118,871 (+)NCBI
mRatBN7.2205,963,658 - 6,117,139 (+)NCBI
RefSeq Acc Id: XM_063279124   ⟹   XP_063135194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,421 - 6,118,871 (+)NCBI
RefSeq Acc Id: XM_063279125   ⟹   XP_063135195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,042,101 - 6,118,871 (+)NCBI
RefSeq Acc Id: XM_063279126   ⟹   XP_063135196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,046,872 - 6,118,871 (+)NCBI
RefSeq Acc Id: XM_063279127   ⟹   XP_063135197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,066,764 - 6,118,871 (+)NCBI
RefSeq Acc Id: XR_010060683
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,965,421 - 6,113,783 (+)NCBI
RefSeq Acc Id: NP_001101083   ⟸   NM_001107613
- Peptide Label: isoform 2
- UniProtKB: A6JJP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256255   ⟸   XM_006256193
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2G7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256257   ⟸   XM_006256195
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AJG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256258   ⟸   XM_006256196
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006256259   ⟸   XM_006256197
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSRNOP00000072237   ⟸   ENSRNOT00000081604
Ensembl Acc Id: ENSRNOP00000048981   ⟸   ENSRNOT00000044395
RefSeq Acc Id: XP_038954614   ⟸   XM_039098686
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000094383   ⟸   ENSRNOT00000107130
RefSeq Acc Id: NP_001401872   ⟸   NM_001414943
- Peptide Label: isoform 1
- UniProtKB: D4AC12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135194   ⟸   XM_063279124
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063135195   ⟸   XM_063279125
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063135196   ⟸   XM_063279126
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063135197   ⟸   XM_063279127
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000108273   ⟸   ENSRNOT00000152658
Protein Domains
PID   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AC12-F1-model_v2 AlphaFold D4AC12 1-1125 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701470
Promoter ID:EPDNEW_R11979
Type:multiple initiation site
Name:Anks1a_1
Description:ankyrin repeat and sterile alpha motif domain containing 1A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0207,484,754 - 7,484,814EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309183 AgrOrtholog
BioCyc Gene G2FUF-4451 BioCyc
Ensembl Genes ENSRNOG00000000498 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044395 ENTREZGENE
  ENSRNOT00000044395.7 UniProtKB/TrEMBL
  ENSRNOT00000081604 ENTREZGENE
  ENSRNOT00000081604.3 UniProtKB/TrEMBL
  ENSRNOT00000107130 ENTREZGENE
  ENSRNOT00000107130.2 UniProtKB/TrEMBL
  ENSRNOT00000152658 ENTREZGENE
  ENSRNOT00000152658.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro ANKS1/Caskin UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  PTyr_interaction_dom UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM_ANKS1_repeat1 UniProtKB/TrEMBL
  SAM_ANKS1_repeat2 UniProtKB/TrEMBL
  SAM_type UniProtKB/TrEMBL
KEGG Report rno:309639 UniProtKB/TrEMBL
NCBI Gene 309639 ENTREZGENE
PANTHER ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR24174:SF4 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  PID UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
PhenoGen Anks1a PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  PID UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000498 RatGTEx
SMART ANK UniProtKB/TrEMBL
  PTB UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  SAM_homology UniProtKB/TrEMBL
UniProt A0A0G2K2G7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJG9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LC57_RAT UniProtKB/TrEMBL
  A6JJP3 ENTREZGENE, UniProtKB/TrEMBL
  D4AC12 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Anks1a  ankyrin repeat and sterile alpha motif domain containing 1A  Anks1  ankyrin repeat and SAM domain containing 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Anks1  ankyrin repeat and SAM domain containing 1   Anks1_predicted  ankyrin repeat and SAM domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Anks1_predicted  ankyrin repeat and SAM domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED