Rpap2 (RNA polymerase II associated protein 2) - Rat Genome Database

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Gene: Rpap2 (RNA polymerase II associated protein 2) Rattus norvegicus
Analyze
Symbol: Rpap2
Name: RNA polymerase II associated protein 2
RGD ID: 1309034
Description: Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in PERK-mediated unfolded protein response and snRNA transcription. Predicted to be part of transcription preinitiation complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPAP2 (RNA polymerase II associated protein 2); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; glafenine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305120; putative RNA polymerase II-associated protein 2; RGD1309034; RNA polymerase II subunit B1 CTD phosphatase Rpap2; RNA polymerase II-associated protein 2; similar to Expressed sequence AW060207
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,253,966 - 2,332,251 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl142,253,968 - 2,332,356 (-)EnsemblGRCr8
mRatBN7.2142,109,044 - 2,187,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,109,053 - 2,187,350 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx141,987,484 - 2,065,871 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,289,301 - 3,367,686 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,985,869 - 2,064,466 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0143,125,595 - 3,204,590 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,124,622 - 3,204,588 (-)Ensemblrn6Rnor6.0
Rnor_5.0143,126,061 - 3,205,485 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4142,664,860 - 2,744,461 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera142,127,947 - 2,207,709 (-)NCBICelera
RGSC_v3.1142,664,860 - 2,744,461 (-)NCBI
Cytogenetic Map14p22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA,ISO,ISS)
cytosol  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)
transcription preinitiation complex  (IEA,ISO,ISS)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Updating the RNA polymerase CTD code: adding gene-specific layers. Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:22137580   PMID:22231121  


Genomics

Comparative Map Data
Rpap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,253,966 - 2,332,251 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl142,253,968 - 2,332,356 (-)EnsemblGRCr8
mRatBN7.2142,109,044 - 2,187,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,109,053 - 2,187,350 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx141,987,484 - 2,065,871 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,289,301 - 3,367,686 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,985,869 - 2,064,466 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0143,125,595 - 3,204,590 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,124,622 - 3,204,588 (-)Ensemblrn6Rnor6.0
Rnor_5.0143,126,061 - 3,205,485 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4142,664,860 - 2,744,461 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera142,127,947 - 2,207,709 (-)NCBICelera
RGSC_v3.1142,664,860 - 2,744,461 (-)NCBI
Cytogenetic Map14p22NCBI
RPAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,299,059 - 92,402,056 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,299,028 - 92,402,056 (+)Ensemblhg38GRCh38
GRCh37192,764,616 - 92,867,613 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,537,193 - 92,626,317 (+)NCBIBuild 36Build 36hg18NCBI36
Celera191,010,952 - 91,106,077 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,884,969 - 90,974,879 (+)NCBIHuRef
CHM1_1192,879,299 - 92,968,461 (+)NCBICHM1_1
T2T-CHM13v2.0192,143,968 - 92,246,943 (+)NCBIT2T-CHM13v2.0
Rpap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,745,239 - 107,809,719 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,745,239 - 107,809,704 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385107,597,373 - 107,661,853 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,597,373 - 107,661,838 (+)Ensemblmm10GRCm38
MGSCv375108,026,399 - 108,090,857 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365107,838,037 - 107,902,138 (+)NCBIMGSCv36mm8
Celera5104,709,740 - 104,774,242 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map552.23NCBI
Rpap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554232,101,780 - 2,195,390 (-)Ensembl
ChiLan1.0NW_0049554232,062,163 - 2,195,351 (-)NCBIChiLan1.0ChiLan1.0
RPAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21134,634,757 - 134,722,997 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11133,774,458 - 133,877,685 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,962,964 - 95,102,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,701,765 - 93,790,323 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,701,765 - 93,790,323 (+)EnsemblpanPan2panpan1.1
RPAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,564,310 - 56,644,382 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,264,179 - 59,343,537 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0656,941,722 - 57,021,916 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl656,873,999 - 57,021,872 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,621,561 - 56,701,635 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,600,482 - 56,680,323 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0657,060,629 - 57,140,708 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,169,688 - 102,255,994 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365376,692,000 - 6,778,275 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,690,317 - 124,773,887 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.14124,691,655 - 124,773,914 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,360,271 - 136,442,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12040,863,401 - 40,950,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2040,863,719 - 40,950,879 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603377,056,891 - 77,145,495 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247425,338,997 - 5,434,936 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpap2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11117,356,580 - 17,426,924 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpap2
497 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:85
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000002815, ENSRNOT00000063778
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14111334906Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat

Markers in Region
D14Rat97  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera142,169,969 - 2,170,174UniSTS
FHH x ACI Map141.41RGD
FHH x ACI Map141.41UniSTS
Cytogenetic Map14p22UniSTS
BE095638  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,109,102 - 2,109,272 (+)MAPPERmRatBN7.2
Rnor_6.0143,125,656 - 3,125,825NCBIRnor6.0
Rnor_5.0143,126,122 - 3,126,291UniSTSRnor5.0
RGSC_v3.4142,664,906 - 2,665,075UniSTSRGSC3.4
Celera142,127,993 - 2,128,162UniSTS
RH 3.4 Map1437.3UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002815   ⟹   ENSRNOP00000002815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,253,968 - 2,332,356 (-)Ensembl
mRatBN7.2 Ensembl142,109,059 - 2,187,350 (-)Ensembl
Rnor_6.0 Ensembl143,124,622 - 3,204,588 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095290   ⟹   ENSRNOP00000084495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,279,319 - 2,332,154 (-)Ensembl
mRatBN7.2 Ensembl142,134,414 - 2,187,072 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095884   ⟹   ENSRNOP00000090972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,253,968 - 2,328,996 (-)Ensembl
mRatBN7.2 Ensembl142,109,053 - 2,187,322 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102281   ⟹   ENSRNOP00000078517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,253,968 - 2,332,154 (-)Ensembl
mRatBN7.2 Ensembl142,109,059 - 2,187,246 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106624   ⟹   ENSRNOP00000080489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,253,968 - 2,332,154 (-)Ensembl
mRatBN7.2 Ensembl142,109,059 - 2,187,246 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111385   ⟹   ENSRNOP00000090942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,253,968 - 2,332,154 (-)Ensembl
mRatBN7.2 Ensembl142,109,063 - 2,187,318 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119617   ⟹   ENSRNOP00000081066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,295,710 - 2,332,154 (-)Ensembl
mRatBN7.2 Ensembl142,150,617 - 2,187,322 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135453   ⟹   ENSRNOP00000106193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,260,179 - 2,332,154 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154779   ⟹   ENSRNOP00000102361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl142,260,179 - 2,332,154 (-)Ensembl
RefSeq Acc Id: NM_001013987   ⟹   NP_001014009
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,253,966 - 2,332,154 (-)NCBI
mRatBN7.2142,109,057 - 2,187,246 (-)NCBI
Rnor_6.0143,125,610 - 3,204,492 (-)NCBI
Rnor_5.0143,126,061 - 3,205,485 (-)NCBI
RGSC_v3.4142,664,860 - 2,744,461 (-)RGD
Celera142,127,947 - 2,207,709 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250548   ⟹   XP_006250610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,253,966 - 2,332,251 (-)NCBI
mRatBN7.2142,109,053 - 2,187,343 (-)NCBI
Rnor_6.0143,125,595 - 3,204,590 (-)NCBI
Rnor_5.0143,126,061 - 3,205,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769928   ⟹   XP_008768150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,254,312 - 2,332,251 (-)NCBI
mRatBN7.2142,109,407 - 2,187,343 (-)NCBI
Rnor_6.0143,126,517 - 3,204,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769929   ⟹   XP_008768151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,253,966 - 2,332,251 (-)NCBI
mRatBN7.2142,109,044 - 2,187,343 (-)NCBI
Rnor_6.0143,125,595 - 3,204,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063273014   ⟹   XP_063129084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,253,966 - 2,332,251 (-)NCBI
RefSeq Acc Id: XM_063273015   ⟹   XP_063129085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,291,497 - 2,332,251 (-)NCBI
RefSeq Acc Id: XM_063273016   ⟹   XP_063129086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,291,497 - 2,332,251 (-)NCBI
RefSeq Acc Id: XM_063273017   ⟹   XP_063129087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,253,966 - 2,323,647 (-)NCBI
RefSeq Acc Id: NP_001014009   ⟸   NM_001013987
- UniProtKB: D4A5J9 (UniProtKB/Swiss-Prot),   D4A672 (UniProtKB/Swiss-Prot),   Q5I0E6 (UniProtKB/Swiss-Prot),   A6KPI3 (UniProtKB/TrEMBL),   A0A8I5ZL24 (UniProtKB/TrEMBL),   A0A8I5ZQT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250610   ⟸   XM_006250548
- Peptide Label: isoform X1
- UniProtKB: A0A8L2PZW5 (UniProtKB/TrEMBL),   A0A8I5ZL24 (UniProtKB/TrEMBL),   A0A8I5ZQT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768151   ⟸   XM_008769929
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZQT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768150   ⟸   XM_008769928
- Peptide Label: isoform X1
- UniProtKB: A0A8L2PZW5 (UniProtKB/TrEMBL),   A0A8I5ZL24 (UniProtKB/TrEMBL),   A0A8I5ZQT7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002815   ⟸   ENSRNOT00000002815
Ensembl Acc Id: ENSRNOP00000080489   ⟸   ENSRNOT00000106624
Ensembl Acc Id: ENSRNOP00000090972   ⟸   ENSRNOT00000095884
Ensembl Acc Id: ENSRNOP00000090942   ⟸   ENSRNOT00000111385
Ensembl Acc Id: ENSRNOP00000084495   ⟸   ENSRNOT00000095290
Ensembl Acc Id: ENSRNOP00000078517   ⟸   ENSRNOT00000102281
Ensembl Acc Id: ENSRNOP00000081066   ⟸   ENSRNOT00000119617
RefSeq Acc Id: XP_063129084   ⟸   XM_063273014
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AFB1 (UniProtKB/TrEMBL),   A0A8I5ZQT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129087   ⟸   XM_063273017
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063129086   ⟸   XM_063273016
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G7H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129085   ⟸   XM_063273015
- Peptide Label: isoform X4
- UniProtKB: A0A8I6G7H2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102361   ⟸   ENSRNOT00000154779
Ensembl Acc Id: ENSRNOP00000106193   ⟸   ENSRNOT00000135453
Protein Domains
RTR1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0E6-F1-model_v2 AlphaFold Q5I0E6 1-609 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699157
Promoter ID:EPDNEW_R9682
Type:multiple initiation site
Name:Rpap2_1
Description:RNA polymerase II associated protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0143,204,573 - 3,204,633EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309034 AgrOrtholog
BioCyc Gene G2FUF-16626 BioCyc
Ensembl Genes ENSRNOG00000023484 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000002815 ENTREZGENE
  ENSRNOT00000106624 ENTREZGENE
  ENSRNOT00000119617 ENTREZGENE
  ENSRNOT00000135453 ENTREZGENE
Gene3D-CATH 1.25.40.820 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7123983 IMAGE-MGC_LOAD
InterPro Rtr1/RPAP2 UniProtKB/Swiss-Prot
  Rtr1/RPAP2_dom UniProtKB/Swiss-Prot
  Rtr1/RPAP2_sf UniProtKB/Swiss-Prot
KEGG Report rno:305120 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95054 IMAGE-MGC_LOAD
NCBI Gene 305120 ENTREZGENE
PANTHER PTHR14732 UniProtKB/Swiss-Prot
  RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATED UniProtKB/Swiss-Prot
Pfam RPAP2_Rtr1 UniProtKB/Swiss-Prot
PhenoGen Rpap2 PhenoGen
PROSITE ZF_RTR1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000023484 RatGTEx
UniProt A0A8I5ZL24 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1E7_RAT UniProtKB/TrEMBL
  A0A8I6ABY8_RAT UniProtKB/TrEMBL
  A0A8I6AFB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G7H2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2PZW5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L7M6_RAT UniProtKB/TrEMBL
  A0ABK0LMR6_RAT UniProtKB/TrEMBL
  A6KPI3 ENTREZGENE, UniProtKB/TrEMBL
  A6KPI4_RAT UniProtKB/TrEMBL
  D4A5J9 ENTREZGENE
  D4A672 ENTREZGENE
  Q5I0E6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary D4A5J9 UniProtKB/Swiss-Prot
  D4A672 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Rpap2  RNA polymerase II associated protein 2  RGD1309034  similar to Expressed sequence AW060207  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309034  similar to Expressed sequence AW060207  RGD1309034_predicted  similar to Expressed sequence AW060207 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309034_predicted  similar to Expressed sequence AW060207 (predicted)  LOC305120_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305120_predicted  similar to Expressed sequence AW060207 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL