Ugt2a3 (UDP glucuronosyltransferase family 2 member A3) - Rat Genome Database

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Gene: Ugt2a3 (UDP glucuronosyltransferase family 2 member A3) Rattus norvegicus
Analyze
Symbol: Ugt2a3
Name: UDP glucuronosyltransferase family 2 member A3
RGD ID: 1308444
Description: Predicted to enable glucuronosyltransferase activity. Predicted to be involved in xenobiotic metabolic process. Predicted to be located in membrane. Orthologous to human UGT2A3 (UDP glucuronosyltransferase family 2 member A3); PARTICIPATES IN ascorbate and aldarate metabolic pathway; O-linked glycan biosynthetic pathway; pentose and glucuronate interconversion pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-dihydroxybenzoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC289533; RGD1308444; similar to RIKEN cDNA 2010321J07; UDP glucuronosyltransferase 2 family, polypeptide A3; UDP-glucuronosyltransferase 2A3
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81420,851,970 - 20,869,974 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1420,851,969 - 20,869,973 (+)EnsemblGRCr8
mRatBN7.21420,572,793 - 20,590,795 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1420,572,808 - 20,590,729 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1420,762,277 - 20,779,780 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01422,081,193 - 22,098,698 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01420,836,549 - 20,854,042 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01422,251,507 - 22,267,899 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1422,192,970 - 22,619,968 (+)Ensemblrn6Rnor6.0
Rnor_5.01422,165,755 - 22,182,147 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41422,099,350 - 22,116,820 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1419,976,311 - 19,993,782 (+)NCBICelera
RGSC_v3.11422,099,349 - 22,116,820 (+)NCBI
Cytogenetic Map14p21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-dihydroxybenzoic acid  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
arotinoid acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
CHIR 99021  (ISO)
chlorohydrocarbon  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
cyclosporin A  (ISO)
deoxycholic acid  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (EXP)
Diallyl sulfide  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fipronil  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
indole-3-methanol  (EXP)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
metformin  (EXP)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP)
N-nitrosodiethylamine  (EXP)
okadaic acid  (ISO)
oltipraz  (ISO)
orphenadrine  (EXP)
oxybenzone  (EXP)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenformin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (ISO)
Torularhodin  (ISO)
trichloroethene  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19858781  


Genomics

Comparative Map Data
Ugt2a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81420,851,970 - 20,869,974 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1420,851,969 - 20,869,973 (+)EnsemblGRCr8
mRatBN7.21420,572,793 - 20,590,795 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1420,572,808 - 20,590,729 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1420,762,277 - 20,779,780 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01422,081,193 - 22,098,698 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01420,836,549 - 20,854,042 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01422,251,507 - 22,267,899 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1422,192,970 - 22,619,968 (+)Ensemblrn6Rnor6.0
Rnor_5.01422,165,755 - 22,182,147 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41422,099,350 - 22,116,820 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1419,976,311 - 19,993,782 (+)NCBICelera
RGSC_v3.11422,099,349 - 22,116,820 (+)NCBI
Cytogenetic Map14p21NCBI
UGT2A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38468,928,463 - 68,951,804 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl468,928,459 - 68,951,804 (-)Ensemblhg38GRCh38
GRCh37469,794,181 - 69,817,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36469,828,756 - 69,852,093 (-)NCBIBuild 36Build 36hg18NCBI36
Celera467,135,540 - 67,158,847 (-)NCBICelera
Cytogenetic Map4q13.2NCBI
HuRef465,589,708 - 65,613,015 (-)NCBIHuRef
CHM1_1469,830,758 - 69,854,100 (-)NCBICHM1_1
T2T-CHM13v2.0472,369,135 - 72,392,453 (-)NCBIT2T-CHM13v2.0
Ugt2a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39587,472,694 - 87,485,054 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl587,472,831 - 87,485,054 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38587,324,972 - 87,337,195 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl587,324,972 - 87,337,195 (-)Ensemblmm10GRCm38
MGSCv37587,753,997 - 87,766,220 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36588,399,533 - 88,411,737 (-)NCBIMGSCv36mm8
Celera584,541,315 - 84,553,528 (-)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.56NCBI
LOC100978938
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2361,009,787 - 61,033,192 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1461,212,686 - 61,236,139 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0455,157,059 - 55,180,507 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1461,613,083 - 61,636,511 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl461,612,932 - 61,636,511 (+)EnsemblpanPan2panpan1.1
UGT2A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11359,036,107 - 59,057,684 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1358,885,246 - 58,886,599 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
LOC100624788
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1866,646,241 - 66,689,685 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2870,984,983 - 71,021,850 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Ugt2a3
174 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000002705
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141787564536079022Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141133490630674469Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141133471628389666Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141891545442433608Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141889519263895192Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141790672654251504Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141513759431238250Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 4 3 35 63 63 41 13 41 4 107 29 20 27 26 22

Sequence


Ensembl Acc Id: ENSRNOT00000002704   ⟹   ENSRNOP00000002704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1422,192,970 - 22,619,640 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000002705   ⟹   ENSRNOP00000002705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1420,851,969 - 20,869,653 (+)Ensembl
mRatBN7.2 Ensembl1420,572,808 - 20,590,474 (+)Ensembl
Rnor_6.0 Ensembl1422,251,507 - 22,445,627 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000041514   ⟹   ENSRNOP00000040239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1422,192,970 - 22,217,094 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000048482   ⟹   ENSRNOP00000050445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1422,597,103 - 22,619,968 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087991   ⟹   ENSRNOP00000069688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1420,851,969 - 20,869,973 (+)Ensembl
mRatBN7.2 Ensembl1420,572,808 - 20,590,729 (+)Ensembl
Rnor_6.0 Ensembl1422,251,499 - 22,268,222 (+)Ensembl
RefSeq Acc Id: NM_001135869   ⟹   NP_001129341
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81420,851,970 - 20,869,974 (+)NCBI
mRatBN7.21420,572,793 - 20,590,795 (+)NCBI
Rnor_6.01422,251,507 - 22,267,899 (+)NCBI
Rnor_5.01422,165,755 - 22,182,147 (+)NCBI
RGSC_v3.41422,099,350 - 22,116,820 (+)RGD
Celera1419,976,311 - 19,993,782 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001129341 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL83157 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002705.6
  ENSRNOP00000069688
  ENSRNOP00000069688.3
RefSeq Acc Id: NP_001129341   ⟸   NM_001135869
- Peptide Label: precursor
- UniProtKB: A0A0G2JW02 (UniProtKB/TrEMBL),   A6KU29 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002704   ⟸   ENSRNOT00000002704
Ensembl Acc Id: ENSRNOP00000002705   ⟸   ENSRNOT00000002705
Ensembl Acc Id: ENSRNOP00000069688   ⟸   ENSRNOT00000087991
Ensembl Acc Id: ENSRNOP00000050445   ⟸   ENSRNOT00000048482
Ensembl Acc Id: ENSRNOP00000040239   ⟸   ENSRNOT00000041514

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A147-F1-model_v2 AlphaFold D4A147 1-532 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699251
Promoter ID:EPDNEW_R9776
Type:multiple initiation site
Name:Ugt2a3_1
Description:UDP glucuronosyltransferase family 2 member A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01422,251,474 - 22,251,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308444 AgrOrtholog
BioCyc Gene G2FUF-16117 BioCyc
Ensembl Genes ENSRNOG00000001973 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002705.8 UniProtKB/TrEMBL
  ENSRNOT00000087991 ENTREZGENE
  ENSRNOT00000087991.3 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/TrEMBL
InterPro UDP-glycosyltransferase UniProtKB/TrEMBL
  UDP_glucos_trans UniProtKB/TrEMBL
  UDP_glycos_trans_CS UniProtKB/TrEMBL
KEGG Report rno:289533 UniProtKB/TrEMBL
NCBI Gene 289533 ENTREZGENE
PANTHER EG:EG0003.4 PROTEIN-RELATED UniProtKB/TrEMBL
  UDP-GLUCURONOSYLTRANSFERASE 2A3 UniProtKB/TrEMBL
Pfam UDPGT UniProtKB/TrEMBL
PhenoGen Ugt2a3 PhenoGen
PROSITE UDPGT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001973 RatGTEx
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt A0A0G2JW02 ENTREZGENE, UniProtKB/TrEMBL
  A6KU29 ENTREZGENE, UniProtKB/TrEMBL
  D4A147_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Ugt2a3  UDP glucuronosyltransferase family 2 member A3  Ugt2a3  UDP glucuronosyltransferase 2 family, polypeptide A3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ugt2a3  UDP glucuronosyltransferase 2 family, polypeptide A3   Ugt2a3_predicted  UDP glucuronosyltransferase 2 family, polypeptide A3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Ugt2a3_predicted  UDP glucuronosyltransferase 2 family, polypeptide A3 (predicted)  RGD1308444_predicted  similar to RIKEN cDNA 2010321J07 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1308444_predicted  similar to RIKEN cDNA 2010321J07 (predicted)  LOC289533_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC289533_predicted  similar to RIKEN cDNA 2010321J07 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL