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Gene: Lnx2 (ligand of numb-protein X 2) Rattus norvegicus

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Symbol:

Lnx2

Name:

ligand of numb-protein X 2

RGD ID:

1308222

Description:

Predicted to enable PDZ domain binding activity; identical protein binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within neural precursor cell proliferation and neuron differentiation. Predicted to be located in plasma membrane. Orthologous to human LNX2 (ligand of numb-protein X 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ligand of Numb protein X 2; LOC360761

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LNX2 (ligand of numb-protein X 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lnx2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lnx2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LNX2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LNX2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lnx2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LNX2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LNX2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lnx2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lnx2 (ligand of numb-protein X 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LIMK1 (LIM domain kinase 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	LNX2 (ligand of numb-protein X 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lnx2 (ligand of numb-protein X 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lnx2a (ligand of numb-protein X 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	inaD	Alliance	DIOPT (InParanoid\|PANTHER)
Drosophila melanogaster (fruit fly):	a	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	lnx2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	13,119,139 - 13,184,401 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	13,119,139 - 13,184,401 (+)	Ensembl				GRCr8
mRatBN7.2	12	8,005,202 - 8,070,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	8,005,227 - 8,070,494 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	8,807,977 - 8,872,553 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	9,431,164 - 9,495,736 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	8,454,569 - 8,519,143 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	9,728,415 - 9,793,428 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	9,728,486 - 9,793,428 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	11,840,760 - 11,904,808 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	8,359,540 - 8,420,393 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	9,831,032 - 9,895,957 (+)	NCBI		Celera
RGSC_v3.1	12	8,389,432 - 8,414,461 (-)	NCBI
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

azoxystrobin (EXP)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

CGP 52608 (ISO)

chlorpyrifos (EXP)

choline (ISO)

cobalt dichloride (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dibenz[a,h]anthracene (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

gentamycin (EXP)

glafenine (EXP)

glyphosate (EXP)

Heptachlor epoxide (ISO)

imidacloprid (EXP)

L-methionine (ISO)

leflunomide (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

N-ethyl-N-nitrosourea (ISO)

paracetamol (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (EXP,ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

nervous system development (IEA)

neural precursor cell proliferation (ISO)

neuron differentiation (ISO)

Cellular Component

plasma membrane (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

metal ion binding (IEA)

PDZ domain binding (IEA,ISO)

protein binding (ISO)

ubiquitin-protein transferase activity (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11922143	PMID:31628376

Genomics

Comparative Map Data

Lnx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	13,119,139 - 13,184,401 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	13,119,139 - 13,184,401 (+)	Ensembl				GRCr8
mRatBN7.2	12	8,005,202 - 8,070,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	8,005,227 - 8,070,494 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	8,807,977 - 8,872,553 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	9,431,164 - 9,495,736 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	8,454,569 - 8,519,143 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	9,728,415 - 9,793,428 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	9,728,486 - 9,793,428 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	11,840,760 - 11,904,808 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	8,359,540 - 8,420,393 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	9,831,032 - 9,895,957 (+)	NCBI		Celera
RGSC_v3.1	12	8,389,432 - 8,414,461 (-)	NCBI
Cytogenetic Map	12	p11	NCBI

LNX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	27,545,913 - 27,621,107 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	27,545,911 - 27,621,344 (-)	Ensembl			hg38	GRCh38
GRCh37	13	28,120,050 - 28,194,666 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	27,018,050 - 27,092,720 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	27,018,051 - 27,092,539	NCBI
Celera	13	9,188,676 - 9,263,351 (-)	NCBI		Celera
Cytogenetic Map	13	q12.2	NCBI
HuRef	13	8,941,242 - 8,977,156 (-)	NCBI		HuRef
CHM1_1	13	28,088,226 - 28,162,972 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	26,766,973 - 26,842,233 (-)	NCBI		T2T-CHM13v2.0

Lnx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	146,953,471 - 147,013,364 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	146,953,465 - 147,013,396 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	147,016,655 - 147,076,572 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	147,016,655 - 147,076,586 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	147,828,231 - 147,888,148 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	147,327,452 - 147,386,878 (-)	NCBI		MGSCv36	mm8
Celera	5	145,005,965 - 145,065,864 (-)	NCBI		Celera
Cytogenetic Map	5	G3	NCBI
cM Map	5	86.69	NCBI

Lnx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	6,948,268 - 6,984,888 (-)	Ensembl
ChiLan1.0	NW_004955497	6,948,329 - 6,989,455 (-)	NCBI	ChiLan1.0	ChiLan1.0

LNX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	27,141,674 - 27,217,026 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	18,246,462 - 18,321,695 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	8,835,206 - 8,910,547 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	27,180,527 - 27,242,718 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	27,180,527 - 27,241,429 (-)	Ensembl			panPan2	panpan1.1

LNX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	12,000,060 - 12,076,366 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	12,030,172 - 12,074,769 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	12,063,678 - 12,140,211 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	12,129,307 - 12,205,840 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	12,129,283 - 12,205,599 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	12,023,903 - 12,100,416 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	12,015,870 - 12,092,413 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	12,060,556 - 12,137,278 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lnx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	173,112,222 - 173,178,535 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	22,775,752 - 22,809,992 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	22,773,617 - 22,839,946 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LNX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	4,960,239 - 5,043,045 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	4,960,237 - 5,004,186 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	4,496,676 - 4,541,012 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LNX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	6,697,837 - 6,772,215 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	6,697,605 - 6,733,880 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666057	37,619,254 - 37,694,482 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lnx2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	10,925,732 - 10,962,861 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624776	10,875,734 - 10,962,731 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lnx2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	6,794,556 - 6,858,557 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lnx2
442 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	268
Count of miRNA genes:	176
Interacting mature miRNAs:	212
Transcripts:	ENSRNOT00000001263
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1357337	Gluco3	Glucose level QTL 3		0.0004	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	12	1	16966671	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	11869600	16966542	Rat
61334	Gluco17	Glucose level QTL 17	6.3		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	12	1	16966671	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
724526	Uae3	Urinary albumin excretion QTL 3	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	12	1	15486827	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

RH141920

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	8,069,494 - 8,069,706 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	9,792,429 - 9,792,640	NCBI	Rnor6.0
Rnor_5.0	12	11,903,809 - 11,904,020	UniSTS	Rnor5.0
Celera	12	9,894,958 - 9,895,169	UniSTS
Cytogenetic Map	12	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001263 ⟹ ENSRNOP00000001263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	13,119,139 - 13,184,401 (+)	Ensembl
mRatBN7.2 Ensembl	12	8,005,227 - 8,070,494 (+)	Ensembl
Rnor_6.0 Ensembl	12	9,728,486 - 9,793,428 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094877 ⟹ ENSRNOP00000091012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	8,005,268 - 8,063,582 (+)	Ensembl

RefSeq Acc Id:

NM_001108329 ⟹ NP_001101799

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	13,119,139 - 13,184,401 (+)	NCBI
mRatBN7.2	12	8,005,227 - 8,070,494 (+)	NCBI
Rnor_6.0	12	9,728,486 - 9,793,428 (+)	NCBI
Rnor_5.0	12	11,840,760 - 11,904,808 (+)	NCBI
RGSC_v3.4	12	8,359,540 - 8,420,393 (-)	RGD
Celera	12	9,831,032 - 9,895,957 (+)	RGD

Sequence:

show sequence

GCAGCAGGGGCGGTTGAGAAGTAAAGTCTTGGCCGGACTTTGCTTCTCGCCAGGAAATCGGCGG
CGGTGAGTCCCGGCAGAGCGGAGCCGGGTAGCGTCCTCGTTAGCGCGCCCGCGGGGAGCCCGCC
GCTTTCCGTCAGCAGACACACACCCTGCAAGTGTTGGACCCATGAGCCTCTGGGAACAGCCGAT
TGACCATGGGAACAACCAGTGATGAGATGGTGCCCGTGCAGCAGGCCTCCTCGGCCTCCTCCCT
AGATCCCCTGTGCTTCGAGTGTGGCCAGCAGCACTGGGCGAGAGAGAACCACTTGTACAACTAC
CAGGGGGAGGTGGACGACGACCTCGTCTGCCACATTTGCCTCCAGCCCCTGCTTCAGCCGCTCG
ACACGCCCTGTGGACACACGTTCTGCCACAAGTGCCTCAGAAACTTCCTGCAGGAGAAAGACTT
CTGTCCGCTGGACCGCAAGAGGCTTCATTTCAAGTTGTGTAAGAAATCTAGCATCTTGGTCCAT
AAGCTTCTGGACAAATTACTGGTTCTGTGTCCATTTTCTTCCGTGTGCCAAGATGTAATGCAGC
GCTGTGACCTGGAGGCGCATCTTAAAAACAGGTGTCTTGGAGCCTCTCACCGGAGAGTTGATCT
AGAGAGAAGGAAAACTAGTCAAGCTCATACACAGATTGAGGGTGAAACTGGATCCACTGTAATA
GATCCTCCAGGCCCCTCACCCCCAGAAACGGACTGCTTGGGTACTGTGCCTGGAGAGAGAAACT
CGACACCTGCACCTCTTCCTGTGTGGACCGAGGATCCCGGCCTGGACAACCCCGCCTTTGAGGA
GAGCGCTGCAGCTGACTCCGTACAACAGCCACTTAGTTTACCAGAAGGAGAGATCACCACCATC
GAGATCCACCGCACTAACCCGTACATCCAGTTAGGAATCAGCATCGTTGGCGGCAATGAGACGC
CACTGATCAACATCGTCATTCAGGAAGTCTACCGGGACGGGGCCATCGCCAGAGATGGAAGGCT
CCTTGCCGGAGACCAGATTCTTCAGGTCAACAACTGTGATATCAGCAACGTGTCCCATAACTAC
GCCCGGGCTGTCCTTTCCCAGCCCTGCAGCACCCTGCACCTGACAGTGCTTCGGGAGCGGCGCT
TCGGCAGTCGTGCAAACAACCACGCCGACGGCAGTGCGCCACGGGACGAGGTCTTCCAAGTGCT
GCTCCACAAACGTGACTCCGCAGAGCAGCTCGGCATTAAACTGGTCCGACGGACAGATGAGCCG
GGCGTTTTCATTCTTGACCTCCTGGAAGGGGGGTTGGCCGCACAGGACGGCAGGCTCAGCAGCA
ATGACCGGGTGCTAGCCATCAACGGACATGACTTGAAGCAGGGGACCCCAGAGCTCGCTGCCCA
CATTATTCAGGCCAGCGGAGAGAGGGTGAACTTAACAATTGCCAGACCAGGGAAGCCCCAGCCC
AGCAATGGCAGCCGTGAGGCCGGAGCACACAGCAGCAACCATGCTCAGCCGCCCTCTCACAGCC
GACCAAGCTCACACAAGGACCTCACCCGGTGTGTCACATGTCAGGAGAAGCATATCACTGTAAA
GAAGGAGCCGCATGAGTCCCTTGGGATGACTGTTGCTGGAGGCAGAGGGAGCAAGAGTGGTGAG
CTGCCCATCTTTGTGACCAGCGTGCCACCCCACGGCTGCCTGGCTCGAGACGGCAGGATCAAGA
GAGGTGACGTGTTGCTGAACATCAACGGCATTGACCTGACCAATCTAAGTCACAGCGAGGCTGT
GGCCATGCTCAAAGCCAGCGCTGCGTCTCCGGCCGTCATCCTCAAAGCCCTGGAAGTCCAGATC
GCTGAGGAAGCAGCCCAGGCCACCGAGGAGCAGCCAGGTGCTTTCAGTGAGAATGAGTACGACG
CCAGCTGGTCCCCGTCCTGGGTCATGTGGCTCGGGCTGCCAAGTGCCCTTCATAGCTGTCATGA
TATAGTCTTACGAAGAAGCTACTTGGGAAGCTGGGGCTTCAGTATCGTGGGCGGATATGAAGAG
AACCACAGCAATCAGCCTTTCTTCATCAAAACCATCGTCTTAGGAACCCCTGCTTACTACGACG
GAAGATTAAAGTGTGGAGACATGATCGTAGCTGTAAATGGCCTGTCGACTGTGGGCATGAGTCA
CTCTGCTCTGGTCCCCATGTTGAAAGAACAGAGGAACAAGGTCACTCTGACGGTCGTCTGCTGG
CCCGGCAGCCTAGTATAGAACCTAGACACTGGTCGGTCTCCAGTCTCCATCCCTCCTGCAGGCT
CTAGAAGGAAGCCCCTCCGGTGTGGCGCTTCTGCTGGGCTGCAGCCACGGGGCCAAAGCACCGA
CATCACCCTGTGTTTCCTCTTGGCCTGGAAATCAGCTCCCGCCAGCTCCAGGGACTCAGTTCAG
ATGCTCTCGGTGACTGGCAAGGCTGTCCCCCGGATGAAAGTGGCTCCTGCGCCTGCAGAGGCTC
CGTCATGAACTGAGTTACATTTGCAGCTCCTCTGTCAGCAGCGGCTCCCTGCAGTGTCCGCAGC
GCTTCCTGCCCTGGCAACAGGGGCTGCGAAGGGGCATCTTAGGTTTTCCTCATTTCCCACTGGT
GCCAACATTTCAAGATTTTTTATACCGTTTATAAAGTGACTTTTCGGTTTGTTTCTACTGCAAT
CTTCACTACTCAAATGAAGACACAAGTCTGACACCACTAATGAGACTTCTTTTTAAATAATGTA
CTGTGGTTGAAATAGAGAGTCAAGGATAATGCTTTTCATGGAGCAGAGCGGCCTGGGAGGTAAA
TTCTGGAAGTGGCAAAGCAGCGTTGCCTTGGACAGCCCAGAAGCACGAAGATTCTGTTCAAAAG
GACAGTTCTGTTACTTAGGGCAAGTTCCAAGATTTTTTTCTAAAAGTCATTTCTGGAGTTTATA
GCTATCAGCCATCTTGCCTGGAGATGTTTTTGTGATTTATGCAATTGAACTAGGTGATTTAAAA
AGCATTACTTCATAAAAAACAACACACACACACACACACACACACACGCGCGCGCGCGCGCGCG
CACCACAGCTAAGTTGAAAGGGAGTCTTTGATTCTTGTTCCTGTGTATTTTAGAAACCCTTAGT
TTCCCACAAGAGACCAAACAGCTGTTTGTTTGGGGTTTTTTTGTTTTGTTTTTAATCTGAAATG
GTAGATATTAAATGTTAGTCATTTTAGCTGTTGCCCACTAAACTTTGTTTTTCTTTCTTTTTCT
TTTTTAATGTTTTGAAAGCTATGTTTGTCCTTTATTCAACACAGTCGACCCTTAGACGGCATAA
AGTGAGAGTTAATAAGAGGGAGAGAATCTTTACCTGGTTAATATTTATACTTGAAAAGTTTCAG
TTAGAAACCTCGTTCAGAATCAGAGCTCGGAGACGAACCGCATTGATAATCATACGCCGCACTG
GCGCTGGGCAAGCCCACTTCCTTAGCCAGTGTGGCTGGGCTTTGTGTCCACATCACTGGTTGTT
GCAGTTAAACTCATATTAAGACAGCTCTGTGTGGTAGGTGAGAGATGGCAACGGTGGTTACTGC
CGGCTTGTTCAGCCCCAGAGTCCCCACAGTCACCATGCAGCCAGCCCACCAAGGGAGGGACGCC
CCCAGCTGTAGTGCTGCTAGGGGACAATCGCCTATGAAGCAATTTGATCCTGAAGTGCAATTGA
TGTGAAACAGTGTCTCTTGTCCCCCAGATACAATTTTGTAACCAACCTTGCTACTTTTTTTAAA
GACTTTGTAAAACCTGTCTTTTCTTTGGGGAGTGGCCATCCAATGGATATCTTAACTGCCACTT
TGTTATACATAAAAATATGTCCAACCTGGTGGTCTGCTGAATATTTTGGGGGGAAAAAAGGGTT
CCTTTCAATATTAATTTTCTCATGAAAATCTCTGAGAGGACAGGCAAGCCATCTCAGGGTCTCC
GTAATAGAATTTCTCCCTGCATCTGATATTTGCACCCTACTCAGTGAAGGGCTTGCAGTTGAAT
ATTTTGATTTGTTCTGAGCCCTCAGTTTACGTTGTTCCGGAATTTTTCGGATATGTTTAACTAG
TGTTGTGATGGCCTTTGGGGAGGGAGGGCAATGCTATCCTATGCGAAGCCATGCAGGCGTTCAT
CTGAGAGCTATGCTCCTATTCCCAGAGACACTGACAGCCACTGCCTGCTGTGCCCGAGCCCCGC
CCACACGCCCCTGTGATGCTCTTGCTCCTGCAGACAGAGTACACCATAGAGCCTACGCTGTCCT
ATGTGTTCCCCATCCACAGGGCCTCTGGCCCTTTGCTGTCTAGTGTGCGGCTGTTGAATCCTTG
AAGCTCGGCCACGCGGTGTACTGAGCTGACAGTGTCTGGGATACACTGGGTTATACTGGGTTCC
ATAGGATGCATTGTGACATTTCCCTCTTACCTTTTCCAATGTGGCTTCCTAGAACCGTTCTAGA
GAATTGAATTGTAATT

hide sequence

RefSeq Acc Id:

XM_006248835 ⟹ XP_006248897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	13,119,159 - 13,183,774 (+)	NCBI
mRatBN7.2	12	8,005,202 - 8,069,867 (+)	NCBI
Rnor_6.0	12	9,728,415 - 9,792,800 (+)	NCBI
Rnor_5.0	12	11,840,760 - 11,904,808 (+)	NCBI

Sequence:

show sequence

GCCTTCGCCCGCCGTTGATTGGCTCAGGTGCGTGTCGGGTTGGGCCTCTGCGCTCGCCCCCGAG
GGGAAAGGCAGCAGGGGCGGTTGAGAAGTAAAGTCTTGGCCGGACTTTGCTTCTCGCCAGGAAA
TCGGCGGCGGTGAGTCCCGGCAGAGCGGAGCCGGGTAGCGTCCTCGTTAGCGCGCCCGCGGGGA
GCCCGCCGCTTTCCGTCAGTGAGTTACTTCGCCTCAGGCAGACACACACCCTGCAAGTGTTGGA
CCCATGAGCCTCTGGGAACAGCCGATTGACCATGGGAACAACCAGTGATGAGATGGTGCCCGTG
CAGCAGGCCTCCTCGGCCTCCTCCCTAGATCCCCTGTGCTTCGAGTGTGGCCAGCAGCACTGGG
CGAGAGAGAACCACTTGTACAACTACCAGGGGGAGGTGGACGACGACCTCGTCTGCCACATTTG
CCTCCAGCCCCTGCTTCAGCCGCTCGACACGCCCTGTGGACACACGTTCTGCCACAAGTGCCTC
AGAAACTTCCTGCAGGAGAAAGACTTCTGTCCGCTGGACCGCAAGAGGCTTCATTTCAAGTTGT
GTAAGAAATCTAGCATCTTGGTCCATAAGCTTCTGGACAAATTACTGGTTCTGTGTCCATTTTC
TTCCGTGTGCCAAGATGTAATGCAGCGCTGTGACCTGGAGGCGCATCTTAAAAACAGGTGTCTT
GGAGCCTCTCACCGGAGAGTTGATCTAGAGAGAAGGAAAACTAGTCAAGCTCATACACAGATTG
AGGGTGAAACTGGATCCACTGTAATAGATCCTCCAGGCCCCTCACCCCCAGAAACGGACTGCTT
GGGTACTGTGCCTGGAGAGAGAAACTCGACACCTGCACCTCTTCCTGTGTGGACCGAGGATCCC
GGCCTGGACAACCCCGCCTTTGAGGAGAGCGCTGCAGCTGACTCCGTACAACAGCCACTTAGTT
TACCAGAAGGAGAGATCACCACCATCGAGATCCACCGCACTAACCCGTACATCCAGTTAGGAAT
CAGCATCGTTGGCGGCAATGAGACGCCACTGATCAACATCGTCATTCAGGAAGTCTACCGGGAC
GGGGCCATCGCCAGAGATGGAAGGCTCCTTGCCGGAGACCAGATTCTTCAGGTCAACAACTGTG
ATATCAGCAACGTGTCCCATAACTACGCCCGGGCTGTCCTTTCCCAGCCCTGCAGCACCCTGCA
CCTGACAGTGCTTCGGGAGCGGCGCTTCGGCAGTCGTGCAAACAACCACGCCGACGGCAGTGCG
CCACGGGACGAGGTCTTCCAAGTGCTGCTCCACAAACGTGACTCCGCAGAGCAGCTCGGCATTA
AACTGGTCCGACGGACAGATGAGCCGGGCGTTTTCATTCTTGACCTCCTGGAAGGGGGGTTGGC
CGCACAGGACGGCAGGCTCAGCAGCAATGACCGGGTGCTAGCCATCAACGGACATGACTTGAAG
CAGGGGACCCCAGAGCTCGCTGCCCACATTATTCAGGCCAGCGGAGAGAGGGTGAACTTAACAA
TTGCCAGACCAGGGAAGCCCCAGCCCAGCAATGGCAGCCGTGAGGCCGGAGCACACAGCAGCAA
CCATGCTCAGCCGCCCTCTCACAGCCGACCAAGCTCACACAAGGACCTCACCCGGTGTGTCACA
TGTCAGGAGAAGCATATCACTGTAAAGAAGGAGCCGCATGAGTCCCTTGGGATGACTGTTGCTG
GAGGCAGAGGGAGCAAGAGTGGTGAGCTGCCCATCTTTGTGACCAGCGTGCCACCCCACGGCTG
CCTGGCTCGAGACGGCAGGATCAAGAGAGGTGACGTGTTGCTGAACATCAACGGCATTGACCTG
ACCAATCTAAGTCACAGCGAGGCTGTGGCCATGCTCAAAGCCAGCGCTGCGTCTCCGGCCGTCA
TCCTCAAAGCCCTGGAAGTCCAGATCGCTGAGGAAGCAGCCCAGGCCACCGAGGAGCAGCCAGG
TGCTTTCAGTGAGAATGAGTACGACGCCAGCTGGTCCCCGTCCTGGGTCATGTGGCTCGGGCTG
CCAAGTGCCCTTCATAGCTGTCATGATATAGTCTTACGAAGAAGCTACTTGGGAAGCTGGGGCT
TCAGTATCGTGGGCGGATATGAAGAGAACCACAGCAATCAGCCTTTCTTCATCAAAACCATCGT
CTTAGGAACCCCTGCTTACTACGACGGAAGATTAAAGTGTGGAGACATGATCGTAGCTGTAAAT
GGCCTGTCGACTGTGGGCATGAGTCACTCTGCTCTGGTCCCCATGTTGAAAGAACAGAGGAACA
AGGTCACTCTGACGGTCGTCTGCTGGCCCGGCAGCCTAGTATAGAACCTAGACACTGGTCGGTC
TCCAGTCTCCATCCCTCCTGCAGGCTCTAGAAGGAAGCCCCTCCGGTGTGGCGCTTCTGCTGGG
CTGCAGCCACGGGGCCAAAGCACCGACATCACCCTGTGTTTCCTCTTGGCCTGGAAATCAGCTC
CCGCCAGCTCCAGGGACTCAGTTCAGATGCTCTCGGTGACTGGCAAGGCTGTCCCCCGGATGAA
AGTGGCTCCTGCGCCTGCAGAGGCTCCGTCATGAACTGAGTTACATTTGCAGCTCCTCTGTCAG
CAGCGGCTCCCTGCAGTGTCCGCAGCGCTTCCTGCCCTGGCAACAGGGGCTGCGAAGGGGCATC
TTAGGTTTTCCTCATTTCCCACTGGTGCCAACATTTCAAGATTTTTTATACCGTTTATAAAGTG
ACTTTTCGGTTTGTTTCTACTGCAATCTTCACTACTCAAATGAAGACACAAGTCTGACACCACT
AATGAGACTTCTTTTTAAATAATGTACTGTGGTTGAAATAGAGAGTCAAGGATAATGCTTTTCA
TGGAGCAGAGCGGCCTGGGAGGTAAATTCTGGAAGTGGCAAAGCAGCGTTGCCTTGGACAGCCC
AGAAGCACGAAGATTCTGTTCAAAAGGACAGTTCTGTTACTTAGGGCAAGTTCCAAGATTTTTT
TCTAAAAGTCATTTCTGGAGTTTATAGCTATCAGCCATCTTGCCTGGAGATGTTTTTGTGATTT
ATGCAATTGAACTAGGTGATTTAAAAAGCATTACTTCATAAAAAACAACACACACACACACACA
CACACACACGCGCGCGCGCGCGCGCGCACCACAGCTAAGTTGAAAGGGAGTCTTTGATTCTTGT
TCCTGTGTATTTTAGAAACCCTTAGTTTCCCACAAGAGACCAAACAGCTGTTTGTTTGGGGTTT
TTTTGTTTTGTTTTTAATCTGAAATGGTAGATATTAAATGTTAGTCATTTTAGCTGTTGCCCAC
TAAACTTTGTTTTTCTTTCTTTTTCTTTTTTAATGTTTTGAAAGCTATGTTTGTCCTTTATTCA
ACACAGTCGACCCTTAGACGGCATAAAGTGAGAGTTAATAAGAGGGAGAGAATCTTTACCTGGT
TAATATTTATACTTGAAAAGTTTCAGTTAGAAACCTCGTTCAGAATCAGAGCTCGGAGACGAAC
CGCATTGATAATCATACGCCGCACTGGCGCTGGGCAAGCCCACTTCCTTAGCCAGTGTGGCTGG
GCTTTGTGTCCACATCACTGGTTGTTGCAGTTAAACTCATATTAAGACAGCTCTGTGTGGTAGG
TGAGAGATGGCAACGGTGGTTACTGCCGGCTTGTTCAGCCCCAGAGTCCCCACAGTCACCATGC
AGCCAGCCCACCAAGGGAGGGACGCCCCCAGCTGTAGTGCTGCTAGGGGACAATCGCCTATGAA
GCAATTTGATCCTGAAGTGCAATTGATGTGAAACAGTGTCTCTTGTCCCCCAGATACAATTTTG
TAACCAACCTTGCTACTTTTTTTAAAGACTTTGTAAAACCTGTCTTTTCTTTGGGGAGTGGCCA
TCCAATGGATATCTTAACTGCCACTTTGTTATACATAAAAATATGTCCAACCTG

hide sequence

RefSeq Acc Id:

XM_039089545 ⟹ XP_038945473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	13,119,159 - 13,183,774 (+)	NCBI
mRatBN7.2	12	8,005,202 - 8,069,867 (+)	NCBI

RefSeq Acc Id:

XM_039089547 ⟹ XP_038945475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	13,119,145 - 13,183,774 (+)	NCBI
mRatBN7.2	12	8,005,205 - 8,069,867 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101799	(Get FASTA)	NCBI Sequence Viewer
	XP_006248897	(Get FASTA)	NCBI Sequence Viewer
	XP_038945473	(Get FASTA)	NCBI Sequence Viewer
	XP_038945475	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89570	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001263
	ENSRNOP00000001263.3

RefSeq Acc Id:

NP_001101799 ⟸ NM_001108329

- UniProtKB:

D3ZRH6 (UniProtKB/TrEMBL), A6K1B2 (UniProtKB/TrEMBL), A0A8I6AEK4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGTTSDEMVPVQQASSASSLDPLCFECGQQHWARENHLYNYQGEVDDDLVCHICLQPLLQPLDT
PCGHTFCHKCLRNFLQEKDFCPLDRKRLHFKLCKKSSILVHKLLDKLLVLCPFSSVCQDVMQRC
DLEAHLKNRCLGASHRRVDLERRKTSQAHTQIEGETGSTVIDPPGPSPPETDCLGTVPGERNST
PAPLPVWTEDPGLDNPAFEESAAADSVQQPLSLPEGEITTIEIHRTNPYIQLGISIVGGNETPL
INIVIQEVYRDGAIARDGRLLAGDQILQVNNCDISNVSHNYARAVLSQPCSTLHLTVLRERRFG
SRANNHADGSAPRDEVFQVLLHKRDSAEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSND
RVLAINGHDLKQGTPELAAHIIQASGERVNLTIARPGKPQPSNGSREAGAHSSNHAQPPSHSRP
SSHKDLTRCVTCQEKHITVKKEPHESLGMTVAGGRGSKSGELPIFVTSVPPHGCLARDGRIKRG
DVLLNINGIDLTNLSHSEAVAMLKASAASPAVILKALEVQIAEEAAQATEEQPGAFSENEYDAS
WSPSWVMWLGLPSALHSCHDIVLRRSYLGSWGFSIVGGYEENHSNQPFFIKTIVLGTPAYYDGR
LKCGDMIVAVNGLSTVGMSHSALVPMLKEQRNKVTLTVVCWPGSLV

hide sequence

RefSeq Acc Id:	XP_006248897 ⟸ XM_006248835
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRH6 (UniProtKB/TrEMBL), A6K1B2 (UniProtKB/TrEMBL), A0A8I6AEK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTTSDEMVPVQQASSASSLDPLCFECGQQHWARENHLYNYQGEVDDDLVCHICLQPLLQPLDT PCGHTFCHKCLRNFLQEKDFCPLDRKRLHFKLCKKSSILVHKLLDKLLVLCPFSSVCQDVMQRC DLEAHLKNRCLGASHRRVDLERRKTSQAHTQIEGETGSTVIDPPGPSPPETDCLGTVPGERNST PAPLPVWTEDPGLDNPAFEESAAADSVQQPLSLPEGEITTIEIHRTNPYIQLGISIVGGNETPL INIVIQEVYRDGAIARDGRLLAGDQILQVNNCDISNVSHNYARAVLSQPCSTLHLTVLRERRFG SRANNHADGSAPRDEVFQVLLHKRDSAEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSND RVLAINGHDLKQGTPELAAHIIQASGERVNLTIARPGKPQPSNGSREAGAHSSNHAQPPSHSRP SSHKDLTRCVTCQEKHITVKKEPHESLGMTVAGGRGSKSGELPIFVTSVPPHGCLARDGRIKRG DVLLNINGIDLTNLSHSEAVAMLKASAASPAVILKALEVQIAEEAAQATEEQPGAFSENEYDAS WSPSWVMWLGLPSALHSCHDIVLRRSYLGSWGFSIVGGYEENHSNQPFFIKTIVLGTPAYYDGR LKCGDMIVAVNGLSTVGMSHSALVPMLKEQRNKVTLTVVCWPGSLV hide sequence

Ensembl Acc Id:

ENSRNOP00000001263 ⟸ ENSRNOT00000001263

RefSeq Acc Id:	XP_038945473 ⟸ XM_039089545
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRH6 (UniProtKB/TrEMBL), A6K1B2 (UniProtKB/TrEMBL), A0A8I6AEK4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945475 ⟸ XM_039089547
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRH6 (UniProtKB/TrEMBL), A6K1B2 (UniProtKB/TrEMBL), A0A8I6AEK4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091012 ⟸ ENSRNOT00000094877

Protein Domains

PDZ RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZRH6-F1-model_v2	AlphaFold	D3ZRH6	1-686	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698404

Promoter ID:

EPDNEW_R8929

Type:

initiation region

Name:

Lnx2_1

Description:

ligand of numb-protein X 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	9,728,537 - 9,728,597	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308222	AgrOrtholog
BioCyc Gene	G2FUF-20108	BioCyc
Ensembl Genes	ENSRNOG00000000955	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001263	ENTREZGENE
	ENSRNOT00000001263.5	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
InterPro	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_scaffold	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:360761	UniProtKB/TrEMBL
NCBI Gene	360761	ENTREZGENE
PANTHER	LIGAND OF NUMB PROTEIN X 2	UniProtKB/TrEMBL
	MULTIPLE PDZ DOMAIN PROTEIN	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
	zf-C3HC4_2	UniProtKB/TrEMBL
PhenoGen	Lnx2	PhenoGen
PROSITE	PDZ	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000955	RatGTEx
SMART	PDZ	UniProtKB/TrEMBL
	RING	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A8I6AEK4	ENTREZGENE
	A6K1B2	ENTREZGENE, UniProtKB/TrEMBL
	D3ZRH6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Lnx2	ligand of numb-protein X 2	Lnx2_predicted	ligand of numb-protein X 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Lnx2_predicted	ligand of numb-protein X 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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