Tbc1d9 (TBC1 domain family member 9) - Rat Genome Database

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Gene: Tbc1d9 (TBC1 domain family member 9) Rattus norvegicus
Analyze
Symbol: Tbc1d9
Name: TBC1 domain family member 9
RGD ID: 1308221
Description: Predicted to enable GTPase activator activity. Predicted to be involved in system process. Orthologous to human TBC1D9 (TBC1 domain family member 9); INTERACTS WITH 3-chloropropane-1,2-diol; acetamide; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC304645; LOC304645; RGD1308221; similar to TBC1 domain family, member 8 (with GRAM domain); TBC1 domain family, member 9; TBC1 domain family, member 9 (with GRAM domain); vascular Rab-GAP/TBC-containing
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,746,732 - 41,855,924 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1941,746,732 - 41,856,092 (-)EnsemblGRCr8
mRatBN7.21924,842,166 - 24,951,383 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,842,205 - 24,943,129 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1931,674,973 - 31,776,024 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01932,328,982 - 32,430,080 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,553,717 - 34,654,494 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,328,381 - 24,429,908 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,329,023 - 24,429,909 (+)Ensemblrn6Rnor6.0
Rnor_5.01935,298,430 - 35,408,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41926,571,531 - 26,672,475 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1924,378,762 - 24,479,282 (-)NCBICelera
RGSC_v3.11926,577,642 - 26,677,302 (-)NCBI
Cytogenetic Map19q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
bortezomib  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
dichloroacetic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glucose  (ISO)
indometacin  (ISO)
itraconazole  (ISO)
ketoconazole  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
maneb  (ISO)
oxamic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
poly(I:C)  (EXP)
potassium chromate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium lactate  (ISO)
tetrachloroethene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tbc1d9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,746,732 - 41,855,924 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1941,746,732 - 41,856,092 (-)EnsemblGRCr8
mRatBN7.21924,842,166 - 24,951,383 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,842,205 - 24,943,129 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1931,674,973 - 31,776,024 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01932,328,982 - 32,430,080 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,553,717 - 34,654,494 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,328,381 - 24,429,908 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,329,023 - 24,429,909 (+)Ensemblrn6Rnor6.0
Rnor_5.01935,298,430 - 35,408,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41926,571,531 - 26,672,475 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1924,378,762 - 24,479,282 (-)NCBICelera
RGSC_v3.11926,577,642 - 26,677,302 (-)NCBI
Cytogenetic Map19q11NCBI
TBC1D9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384140,620,782 - 140,756,385 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4140,620,782 - 140,756,982 (-)Ensemblhg38GRCh38
GRCh374141,541,936 - 141,677,539 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364141,761,386 - 141,896,921 (-)NCBIBuild 36Build 36hg18NCBI36
Celera4138,871,921 - 139,007,760 (-)NCBICelera
Cytogenetic Map4q31.21NCBI
HuRef4137,272,361 - 137,407,474 (-)NCBIHuRef
CHM1_14141,519,260 - 141,654,776 (-)NCBICHM1_1
T2T-CHM13v2.04143,940,460 - 144,076,099 (-)NCBIT2T-CHM13v2.0
Tbc1d9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39883,891,981 - 83,999,569 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl883,891,981 - 83,999,563 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38883,165,352 - 83,272,940 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,165,352 - 83,272,934 (+)Ensemblmm10GRCm38
MGSCv37885,689,251 - 85,796,839 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36886,055,457 - 86,162,527 (+)NCBIMGSCv36mm8
Celera887,444,516 - 87,547,903 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map839.59NCBI
Tbc1d9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554712,360,696 - 2,470,565 (+)Ensembl
ChiLan1.0NW_0049554712,360,062 - 2,469,940 (+)NCBIChiLan1.0ChiLan1.0
TBC1D9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23138,496,996 - 138,632,698 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14138,884,610 - 139,019,564 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04132,982,357 - 133,118,036 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14144,291,723 - 144,426,643 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,293,141 - 144,426,374 (-)EnsemblpanPan2panpan1.1
TBC1D9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha192,389,670 - 2,525,504 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0192,207,515 - 2,343,356 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl192,207,523 - 2,321,593 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1192,144,739 - 2,280,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,505,883 - 2,641,767 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0192,861,879 - 2,997,712 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tbc1d9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530149,731,421 - 49,793,576 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365357,122,602 - 7,229,525 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365357,168,756 - 7,230,911 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,402,839 - 86,517,764 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1886,402,745 - 86,518,182 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2891,902,294 - 91,946,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1787,553,136 - 87,691,254 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl787,552,715 - 87,690,438 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603767,080,240 - 67,220,359 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462485336,464 - 151,309 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462485336,571 - 151,871 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tbc1d9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11716,966,592 - 17,065,402 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tbc1d9
1115 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:96
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000065558
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)194172060949971820Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)194072709254856850Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)193009938347207961Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)194072709254856850Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)194072709254856850Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat

Markers in Region
RH134662  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21924,842,327 - 24,842,513 (-)MAPPERmRatBN7.2
Rnor_6.01924,429,561 - 24,429,746NCBIRnor6.0
Rnor_5.01935,407,857 - 35,408,042UniSTSRnor5.0
RGSC_v3.41926,571,654 - 26,571,839UniSTSRGSC3.4
Celera1924,378,885 - 24,379,070UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000065558   ⟹   ENSRNOP00000063198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1941,746,732 - 41,847,683 (-)Ensembl
mRatBN7.2 Ensembl1924,842,205 - 24,943,129 (-)Ensembl
Rnor_6.0 Ensembl1924,329,023 - 24,429,869 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080934   ⟹   ENSRNOP00000075025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1941,746,732 - 41,846,504 (-)Ensembl
mRatBN7.2 Ensembl1924,843,013 - 24,941,814 (-)Ensembl
Rnor_6.0 Ensembl1924,329,544 - 24,429,909 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113408   ⟹   ENSRNOP00000079826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1941,746,732 - 41,856,092 (-)Ensembl
mRatBN7.2 Ensembl1924,843,013 - 24,942,431 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120255   ⟹   ENSRNOP00000096937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1941,746,732 - 41,847,683 (-)Ensembl
mRatBN7.2 Ensembl1924,843,013 - 24,942,431 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130407   ⟹   ENSRNOP00000103191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1941,746,732 - 41,787,382 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137939   ⟹   ENSRNOP00000109355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1941,746,732 - 41,847,683 (-)Ensembl
RefSeq Acc Id: NM_001415072   ⟹   NP_001402001
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81941,746,732 - 41,847,683 (-)NCBI
mRatBN7.21924,842,166 - 24,943,126 (-)NCBI
RefSeq Acc Id: XM_039097678   ⟹   XP_038953606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81941,746,732 - 41,855,924 (-)NCBI
mRatBN7.21924,842,166 - 24,951,383 (-)NCBI
RefSeq Acc Id: XM_039097679   ⟹   XP_038953607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81941,746,732 - 41,788,058 (-)NCBI
mRatBN7.21924,842,166 - 24,883,601 (-)NCBI
Ensembl Acc Id: ENSRNOP00000063198   ⟸   ENSRNOT00000065558
Ensembl Acc Id: ENSRNOP00000075025   ⟸   ENSRNOT00000080934
RefSeq Acc Id: XP_038953606   ⟸   XM_039097678
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9K0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953607   ⟸   XM_039097679
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K9K0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096937   ⟸   ENSRNOT00000120255
Ensembl Acc Id: ENSRNOP00000079826   ⟸   ENSRNOT00000113408
RefSeq Acc Id: NP_001402001   ⟸   NM_001415072
- UniProtKB: A0A8I5ZNC8 (UniProtKB/TrEMBL),   A6IYF7 (UniProtKB/TrEMBL),   D3ZXE3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109355   ⟸   ENSRNOT00000137939
Ensembl Acc Id: ENSRNOP00000103191   ⟸   ENSRNOT00000130407
Protein Domains
EF-hand   Rab-GAP TBC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K9K0-F1-model_v2 AlphaFold A0A0G2K9K0 1-1262 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308221 AgrOrtholog
BioCyc Gene G2FUF-6004 BioCyc
Ensembl Genes ENSRNOG00000003496 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065558 ENTREZGENE
  ENSRNOT00000065558.4 UniProtKB/TrEMBL
  ENSRNOT00000080934.3 UniProtKB/TrEMBL
  ENSRNOT00000113408 ENTREZGENE
  ENSRNOT00000113408.2 UniProtKB/TrEMBL
  ENSRNOT00000120255.2 UniProtKB/TrEMBL
  ENSRNOT00000130407 ENTREZGENE
  ENSRNOT00000130407.1 UniProtKB/TrEMBL
  ENSRNOT00000137939.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 1 UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro EF-hand-like_dom UniProtKB/TrEMBL
  EF_hand_Ca-bd UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  PH_dom-like UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  RabGAP_TBC UniProtKB/TrEMBL
  TCB1D9/TCB1D9B_PH-GRAM1 UniProtKB/TrEMBL
  TCB1D9/TCB1D9B_PH-GRAM2 UniProtKB/TrEMBL
NCBI Gene 304645 ENTREZGENE
PANTHER PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC UniProtKB/TrEMBL
  TBC1 DOMAIN FAMILY MEMBER 9 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  TBC UniProtKB/TrEMBL
PhenoGen Tbc1d9 PhenoGen
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  TBC_RABGAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003496 RatGTEx
SMART GRAM UniProtKB/TrEMBL
  TBC UniProtKB/TrEMBL
Superfamily-SCOP RabGAP_TBC UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A0G2K9K0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNC8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AU82_RAT UniProtKB/TrEMBL
  A0ABK0LPY9_RAT UniProtKB/TrEMBL
  A0ABK0LY02_RAT UniProtKB/TrEMBL
  A6IYF7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZXE3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Tbc1d9  TBC1 domain family member 9  Tbc1d9  TBC1 domain family, member 9 (with GRAM domain)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-02-02 Tbc1d9  TBC1 domain family, member 9 (with GRAM domain)  Tbc1d9  TBC1 domain family, member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1308221  similar to TBC1 domain family, member 8 (with GRAM domain); vascular Rab-GAP/TBC-containing   RGD1308221_predicted  similar to TBC1 domain family, member 8 (with GRAM domain); vascular Rab-GAP/TBC-containing (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308221_predicted  similar to TBC1 domain family, member 8 (with GRAM domain); vascular Rab-GAP/TBC-containing (predicted)  LOC304645_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304645_predicted  similar to TBC1 domain family, member 8 (with GRAM domain); vascular Rab-GAP/TBC-containing (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL