Tbc1d9 (TBC1 domain family member 9) - Rat Genome Database

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Gene: Tbc1d9 (TBC1 domain family member 9) Ictidomys tridecemlineatus
Analyze
Symbol: Tbc1d9
Name: TBC1 domain family member 9
RGD ID: 12556879
Description: ENCODES a protein that exhibits calcium ion binding (inferred); GTPase activator activity (inferred); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); Experimental Liver Cirrhosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530149,731,421 - 49,793,576 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365357,122,602 - 7,229,525 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365357,168,756 - 7,230,911 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Tbc1d9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530149,731,421 - 49,793,576 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365357,122,602 - 7,229,525 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365357,168,756 - 7,230,911 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384140,620,782 - 140,756,385 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4140,620,782 - 140,756,385 (-)EnsemblGRCh38hg38GRCh38
GRCh374141,541,936 - 141,677,539 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364141,761,386 - 141,896,921 (-)NCBINCBI36Build 36hg18NCBI36
Celera4138,871,921 - 139,007,760 (-)NCBICelera
Cytogenetic Map4q31.21NCBI
HuRef4137,272,361 - 137,407,474 (-)NCBIHuRef
CHM1_14141,519,260 - 141,654,776 (-)NCBICHM1_1
T2T-CHM13v2.04143,940,460 - 144,076,099 (-)NCBIT2T-CHM13v2.0
Tbc1d9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39883,891,981 - 83,999,569 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl883,891,981 - 83,999,563 (+)EnsemblGRCm39 Ensembl
GRCm38883,165,352 - 83,272,940 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,165,352 - 83,272,934 (+)EnsemblGRCm38mm10GRCm38
MGSCv37885,689,251 - 85,796,839 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,055,457 - 86,162,527 (+)NCBIMGSCv36mm8
Celera887,444,516 - 87,547,903 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map839.59NCBI
Tbc1d9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,746,732 - 41,855,924 (-)NCBIGRCr8
mRatBN7.21924,842,166 - 24,951,383 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,842,205 - 24,943,129 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,674,973 - 31,776,024 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01932,328,982 - 32,430,080 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,553,717 - 34,654,494 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,328,381 - 24,429,908 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,329,023 - 24,429,909 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,298,430 - 35,408,204 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,571,531 - 26,672,475 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11926,577,642 - 26,677,302 (-)NCBI
Celera1924,378,762 - 24,479,282 (-)NCBICelera
Cytogenetic Map19q11NCBI
Tbc1d9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554712,360,696 - 2,470,565 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554712,360,062 - 2,469,940 (+)NCBIChiLan1.0ChiLan1.0
TBC1D9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23138,496,996 - 138,632,698 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14138,884,610 - 139,019,564 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04132,982,357 - 133,118,036 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14144,291,723 - 144,426,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,293,141 - 144,426,374 (-)Ensemblpanpan1.1panPan2
TBC1D9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha192,389,670 - 2,525,504 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0192,207,515 - 2,343,356 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl192,207,523 - 2,321,593 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1192,144,739 - 2,280,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,505,883 - 2,641,767 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0192,861,879 - 2,997,712 (+)NCBIUU_Cfam_GSD_1.0
TBC1D9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,402,839 - 86,517,764 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1886,402,745 - 86,518,182 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2891,902,294 - 91,946,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1787,553,136 - 87,691,254 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl787,552,715 - 87,690,438 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603767,080,240 - 67,220,359 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462485336,464 - 151,309 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462485336,571 - 151,871 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000001462   ⟹   ENSSTOP00000001309
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365357,122,602 - 7,229,525 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000039982   ⟹   ENSSTOP00000027206
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365357,122,602 - 7,229,525 (+)Ensembl
RefSeq Acc Id: XM_005327585   ⟹   XP_005327642
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530149,731,421 - 49,793,576 (+)NCBI
SpeTri2.0NW_0049365357,168,756 - 7,230,911 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327642 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001309.3
  ENSSTOP00000027206.1
GenBank Protein KAG3276158 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005327642   ⟸   XM_005327585
- UniProtKB: I3LYM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000027206   ⟸   ENSSTOT00000039982
RefSeq Acc Id: ENSSTOP00000001309   ⟸   ENSSTOT00000001462
Protein Domains
EF-hand   Rab-GAP TBC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001453 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001462.3 UniProtKB/TrEMBL
  ENSSTOT00000039982.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 1 UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  TCB1D9/TCB1D9B_PH-GRAM1 UniProtKB/TrEMBL
  TCB1D9/TCB1D9B_PH-GRAM2 UniProtKB/TrEMBL
NCBI Gene Tbc1d9 ENTREZGENE
PANTHER PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC UniProtKB/TrEMBL
  TBC1 DOMAIN FAMILY MEMBER 9 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  TBC_RABGAP UniProtKB/TrEMBL
SMART GRAM UniProtKB/TrEMBL
  TBC UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF47923 UniProtKB/TrEMBL
UniProt A0A287D0U5_ICTTR UniProtKB/TrEMBL
  I3LYM3 ENTREZGENE, UniProtKB/TrEMBL