Ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase) Rattus norvegicus
Analyze
Symbol: Ssu72
Name: SSU72 homolog, RNA polymerase II CTD phosphatase
RGD ID: 1307854
Description: Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway and termination of RNA polymerase II transcription. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human SSU72 (SSU72 homolog, RNA polymerase II CTD phosphatase); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CTD phosphatase SSU72; LOC298681; MGC116291; RGD1307854; RNA polymerase II subunit A C-terminal domain phosphatase SSU72; similar to HSPC182 protein; Ssu72 RNA polymerase II CTD phosphatase homolog; SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae); Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,595,919 - 171,625,675 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5171,595,851 - 171,625,268 (+)EnsemblGRCr8
mRatBN7.25166,312,267 - 166,343,432 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,313,650 - 166,343,429 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5169,018,554 - 169,048,411 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,839,980 - 170,869,837 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,802,519 - 170,832,376 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd5171,170,840 - 171,200,557 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive5173,187,441 - 173,217,290 (+)NCBILyon_Normotensive
Lyon_Hypertensive5172,363,268 - 172,392,985 (+)NCBILyon_Hypertensive
F344_StmMcwi5165,905,052 - 165,934,769 (+)NCBIF344_StmMcwi
Rnor_6.05173,152,964 - 173,182,720 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,152,964 - 173,182,719 (+)Ensemblrn6Rnor6.0
Rnor_5.05176,628,574 - 176,658,330 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45172,560,734 - 172,591,202 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5164,514,304 - 164,543,917 (+)NCBICelera
RGSC_v3.15172,571,228 - 172,601,697 (+)NCBI
Cytogenetic Map5q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Updating the RNA polymerase CTD code: adding gene-specific layers. Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:20861839  


Genomics

Comparative Map Data
Ssu72
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,595,919 - 171,625,675 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5171,595,851 - 171,625,268 (+)EnsemblGRCr8
mRatBN7.25166,312,267 - 166,343,432 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,313,650 - 166,343,429 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5169,018,554 - 169,048,411 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,839,980 - 170,869,837 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,802,519 - 170,832,376 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd5171,170,840 - 171,200,557 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive5173,187,441 - 173,217,290 (+)NCBILyon_Normotensive
Lyon_Hypertensive5172,363,268 - 172,392,985 (+)NCBILyon_Hypertensive
F344_StmMcwi5165,905,052 - 165,934,769 (+)NCBIF344_StmMcwi
Rnor_6.05173,152,964 - 173,182,720 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,152,964 - 173,182,719 (+)Ensemblrn6Rnor6.0
Rnor_5.05176,628,574 - 176,658,330 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45172,560,734 - 172,591,202 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5164,514,304 - 164,543,917 (+)NCBICelera
RGSC_v3.15172,571,228 - 172,601,697 (+)NCBI
Cytogenetic Map5q36NCBI
SSU72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,541,673 - 1,574,863 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,541,673 - 1,574,884 (-)Ensemblhg38GRCh38
GRCh3711,477,053 - 1,510,243 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,466,916 - 1,500,125 (-)NCBIBuild 36Build 36hg18NCBI36
Celera11,068,953 - 1,103,100 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1750,686 - 783,938 (-)NCBIHuRef
CHM1_111,464,275 - 1,497,415 (-)NCBICHM1_1
T2T-CHM13v2.01976,177 - 1,009,369 (-)NCBIT2T-CHM13v2.0
Ssu72
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,789,272 - 155,818,336 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,789,257 - 155,818,336 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384155,704,815 - 155,733,879 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,704,800 - 155,733,879 (+)Ensemblmm10GRCm38
MGSCv374155,078,924 - 155,107,988 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364154,548,924 - 154,577,582 (+)NCBIMGSCv36mm8
Celera4157,976,790 - 158,005,579 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.07NCBI
Ssu72
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,317,078 - 9,338,414 (+)Ensembl
ChiLan1.0NW_0049554869,317,078 - 9,338,414 (+)NCBIChiLan1.0ChiLan1.0
SSU72
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,645,902 - 226,679,582 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,302,969 - 225,336,524 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01301,984 - 335,634 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,463,184 - 1,494,797 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,463,184 - 1,494,797 (-)EnsemblpanPan2panpan1.1
SSU72
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,620,803 - 56,650,131 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,620,805 - 56,650,131 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha556,696,786 - 56,726,143 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0556,822,938 - 56,852,452 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,822,943 - 56,852,735 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,813,500 - 56,842,860 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,705,870 - 56,735,201 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,096,118 - 57,125,568 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ssu72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,760,381 - 27,787,481 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,678,425 - 1,705,609 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,678,425 - 1,705,569 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSU72
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,728,325 - 63,755,163 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1663,728,318 - 63,757,460 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,158,519 - 58,185,391 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SSU72
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,922,992 - 129,958,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20129,923,091 - 129,958,712 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605434,388,314 - 34,422,273 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssu72
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,147,185 - 8,177,684 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248188,147,173 - 8,177,682 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ssu72
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v114,894,437 - 4,924,214 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:113
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000024349
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat

Markers in Region
D5Got122  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,319,082 - 166,319,230 (+)MAPPERmRatBN7.2
Rnor_6.05173,158,374 - 173,158,519NCBIRnor6.0
Rnor_5.05176,633,984 - 176,634,129UniSTSRnor5.0
RGSC_v3.45172,566,143 - 172,566,289RGDRGSC3.4
RGSC_v3.45172,566,144 - 172,566,289UniSTSRGSC3.4
Celera5164,519,714 - 164,519,840UniSTS
RGSC_v3.15172,576,639 - 172,576,784RGD
RH 3.4 Map51196.7UniSTS
RH 3.4 Map51196.7RGD
RH 2.0 Map51158.9RGD
Cytogenetic Map5q36UniSTS
BF386451  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85171,597,426 - 171,597,617 (+)Marker Load Pipeline
mRatBN7.25166,315,179 - 166,315,370 (+)MAPPERmRatBN7.2
Rnor_6.05173,154,472 - 173,154,662NCBIRnor6.0
Rnor_5.05176,630,082 - 176,630,272UniSTSRnor5.0
RGSC_v3.45172,562,242 - 172,562,432UniSTSRGSC3.4
Celera5164,515,812 - 164,516,002UniSTS
RH 3.4 Map51175.3UniSTS
Cytogenetic Map5q36UniSTS
RH134507  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,343,138 - 166,343,333 (+)MAPPERmRatBN7.2
Rnor_6.05173,182,427 - 173,182,621NCBIRnor6.0
Rnor_5.05176,658,037 - 176,658,231UniSTSRnor5.0
RGSC_v3.45172,590,909 - 172,591,103UniSTSRGSC3.4
Celera5164,543,624 - 164,543,818UniSTS
RH 3.4 Map51174.7UniSTS
Cytogenetic Map5q36UniSTS
BF386608  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,313,206 - 166,313,368 (+)MAPPERmRatBN7.2
Rnor_6.05173,152,500 - 173,152,661NCBIRnor6.0
Rnor_5.05176,628,110 - 176,628,271UniSTSRnor5.0
RGSC_v3.45172,560,270 - 172,560,431UniSTSRGSC3.4
Celera5164,513,840 - 164,514,001UniSTS
RH 3.4 Map51205.71UniSTS
Cytogenetic Map5q36UniSTS
RH138442  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,330,161 - 166,330,372 (+)MAPPERmRatBN7.2
Rnor_6.05173,169,451 - 173,169,661NCBIRnor6.0
Rnor_5.05176,645,061 - 176,645,271UniSTSRnor5.0
RGSC_v3.45172,577,933 - 172,578,143UniSTSRGSC3.4
Celera5164,530,641 - 164,530,851UniSTS
RH 3.4 Map3294.22UniSTS
Cytogenetic Map5q36UniSTS
AI105104  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,330,161 - 166,330,300 (+)MAPPERmRatBN7.2
Rnor_6.05173,169,451 - 173,169,589NCBIRnor6.0
Rnor_5.05176,645,061 - 176,645,199UniSTSRnor5.0
RGSC_v3.45172,577,933 - 172,578,071UniSTSRGSC3.4
Celera5164,530,641 - 164,530,779UniSTS
RH 3.4 Map51175.1UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 84 217 91 90 59 158 59 6 489 285 22 195 114 124 31 34 34

Sequence


Ensembl Acc Id: ENSRNOT00000024349   ⟹   ENSRNOP00000024349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,595,851 - 171,625,268 (+)Ensembl
mRatBN7.2 Ensembl5166,313,650 - 166,343,429 (+)Ensembl
Rnor_6.0 Ensembl5173,152,964 - 173,182,719 (+)Ensembl
RefSeq Acc Id: NM_001025657   ⟹   NP_001020828
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,595,919 - 171,625,675 (+)NCBI
mRatBN7.25166,313,671 - 166,343,432 (+)NCBI
Dahl_SR_JrHsd5171,170,840 - 171,200,557 (+)NCBI
Lyon_Normotensive5173,187,441 - 173,217,290 (+)NCBI
Lyon_Hypertensive5172,363,268 - 172,392,985 (+)NCBI
F344_StmMcwi5165,905,052 - 165,934,769 (+)NCBI
Rnor_6.05173,152,964 - 173,182,720 (+)NCBI
Rnor_5.05176,628,574 - 176,658,330 (+)NCBI
RGSC_v3.45172,560,734 - 172,591,202 (+)RGD
Celera5164,514,304 - 164,543,917 (+)RGD
Sequence:
RefSeq Acc Id: XM_063287497   ⟹   XP_063143567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,623,399 - 171,625,675 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001020828 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143567 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99142 (Get FASTA)   NCBI Sequence Viewer  
  EDL81317 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024349.4
GenBank Protein Q4KLK9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020828   ⟸   NM_001025657
- UniProtKB: Q4KLK9 (UniProtKB/Swiss-Prot),   A6IUR6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024349   ⟸   ENSRNOT00000024349
RefSeq Acc Id: XP_063143567   ⟸   XM_063287497
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLK9-F1-model_v2 AlphaFold Q4KLK9 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694340
Promoter ID:EPDNEW_R4850
Type:multiple initiation site
Name:AC105662_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05173,148,853 - 173,148,913EPDNEW
RGD ID:13694326
Promoter ID:EPDNEW_R4851
Type:initiation region
Name:Ssu72_1
Description:SSU72 homolog, RNA polymerase II CTD phosphatase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4852  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05173,152,943 - 173,153,003EPDNEW
RGD ID:13694327
Promoter ID:EPDNEW_R4852
Type:initiation region
Name:Ssu72_2
Description:SSU72 homolog, RNA polymerase II CTD phosphatase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4851  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05173,153,157 - 173,153,217EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307854 AgrOrtholog
BioCyc Gene G2FUF-38909 BioCyc
Ensembl Genes ENSRNOG00000017829 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000024349.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.2300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7300601 IMAGE-MGC_LOAD
InterPro RNA_pol_II_suA UniProtKB/Swiss-Prot
KEGG Report rno:298681 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116291 IMAGE-MGC_LOAD
NCBI Gene 298681 ENTREZGENE
PANTHER PTHR20383 UniProtKB/Swiss-Prot
Pfam Ssu72 UniProtKB/Swiss-Prot
PhenoGen Ssu72 PhenoGen
RatGTEx ENSRNOG00000017829 RatGTEx
UniProt A6IUR6 ENTREZGENE, UniProtKB/TrEMBL
  Q4KLK9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-13 Ssu72  SSU72 homolog, RNA polymerase II CTD phosphatase  Ssu72  SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-04 Ssu72  SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)  Ssu72  Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ssu72  Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)  RGD1307854  similar to HSPC182 protein  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1307854  similar to HSPC182 protein  RGD1307854_predicted  similar to HSPC182 protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307854_predicted  similar to HSPC182 protein (predicted)  LOC298681_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC298681_predicted  similar to HSPC182 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL