Cmtr1 (cap methyltransferase 1) - Rat Genome Database

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Gene: Cmtr1 (cap methyltransferase 1) Rattus norvegicus
Analyze
Symbol: Cmtr1
Name: cap methyltransferase 1
RGD ID: 1307801
Description: Predicted to enable methyltransferase cap1 activity. Predicted to be involved in 7-methylguanosine mRNA capping. Predicted to be active in cytoplasm and nucleus. Orthologous to human CMTR1 (cap methyltransferase 1); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; cap1 2'O-ribose methyltransferase 1; FtsJ methyltransferase domain containing 2; ftsJ methyltransferase domain-containing protein 2; Ftsjd2; LOC309656; LRRG00129; MTr1; RGD1307801; S-adenosyl-L-methionine-dependent methyltransferase FTSJD2; similar to RIKEN cDNA 1300018I05
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,724,286 - 7,784,787 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl207,683,946 - 7,784,263 (+)EnsemblGRCr8
mRatBN7.2207,722,729 - 7,782,579 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,709,713 - 7,766,302 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx208,425,708 - 8,469,165 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,786,870 - 7,830,327 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0208,259,729 - 8,303,465 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0208,324,968 - 8,385,174 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl208,312,792 - 8,368,764 (+)Ensemblrn6Rnor6.0
Rnor_5.02010,524,633 - 10,568,581 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4207,970,034 - 8,014,387 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera209,260,397 - 9,304,373 (+)NCBICelera
RGSC_v3.1207,970,260 - 8,014,615 (+)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:20713356   PMID:21310715  


Genomics

Comparative Map Data
Cmtr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,724,286 - 7,784,787 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl207,683,946 - 7,784,263 (+)EnsemblGRCr8
mRatBN7.2207,722,729 - 7,782,579 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,709,713 - 7,766,302 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx208,425,708 - 8,469,165 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,786,870 - 7,830,327 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0208,259,729 - 8,303,465 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0208,324,968 - 8,385,174 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl208,312,792 - 8,368,764 (+)Ensemblrn6Rnor6.0
Rnor_5.02010,524,633 - 10,568,581 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4207,970,034 - 8,014,387 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera209,260,397 - 9,304,373 (+)NCBICelera
RGSC_v3.1207,970,260 - 8,014,615 (+)NCBI
Cytogenetic Map20p12NCBI
CMTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38637,423,985 - 37,481,508 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl637,433,094 - 37,482,827 (+)Ensemblhg38GRCh38
GRCh37637,400,997 - 37,449,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36637,508,991 - 37,557,262 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34637,508,990 - 37,557,260NCBI
Celera638,955,882 - 39,004,268 (+)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef637,119,554 - 37,167,927 (+)NCBIHuRef
CHM1_1637,402,653 - 37,451,034 (+)NCBICHM1_1
T2T-CHM13v2.0637,247,428 - 37,305,049 (+)NCBIT2T-CHM13v2.0
Cmtr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,879,569 - 29,924,953 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,879,569 - 29,924,953 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381729,660,595 - 29,705,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,660,595 - 29,705,979 (+)Ensemblmm10GRCm38
MGSCv371729,797,546 - 29,840,304 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361729,387,613 - 29,430,371 (+)NCBIMGSCv36mm8
Celera1730,195,702 - 30,238,370 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.43NCBI
Cmtr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554375,722,352 - 5,765,730 (-)Ensembl
ChiLan1.0NW_0049554375,721,420 - 5,766,316 (-)NCBIChiLan1.0ChiLan1.0
CMTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,905,412 - 51,953,809 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,775,472 - 47,823,898 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,998,651 - 37,046,943 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1638,190,358 - 38,240,345 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl638,190,358 - 38,238,338 (+)EnsemblpanPan2panpan1.1
CMTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1126,454,605 - 6,505,127 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl126,454,652 - 6,504,776 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha126,472,537 - 6,523,008 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0126,919,394 - 6,970,087 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,844,708 - 6,970,087 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1126,455,623 - 6,506,071 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,537,765 - 6,588,374 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0126,636,812 - 6,687,502 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cmtr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,924,508 - 41,973,182 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647621,988,329 - 22,035,766 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647621,987,013 - 22,035,708 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl733,000,485 - 33,063,735 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1733,000,499 - 33,063,739 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,905,567 - 37,968,887 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CMTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11734,660,152 - 34,707,974 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1734,661,519 - 34,708,014 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604437,385,319 - 37,433,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmtr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475420,596,602 - 20,646,888 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475420,599,805 - 20,646,814 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cmtr1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1184,164,734 - 4,207,887 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cmtr1
408 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:480
Count of miRNA genes:225
Interacting mature miRNAs:260
Transcripts:ENSRNOT00000000640
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH144146  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2207,759,382 - 7,759,549 (+)MAPPERmRatBN7.2
Rnor_6.0208,361,860 - 8,362,026NCBIRnor6.0
Rnor_5.02010,561,676 - 10,561,842UniSTSRnor5.0
RGSC_v3.4208,007,483 - 8,007,649UniSTSRGSC3.4
Celera209,297,469 - 9,297,635UniSTS
RH 3.4 Map2082.1UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000640   ⟹   ENSRNOP00000000640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,724,340 - 7,767,874 (+)Ensembl
mRatBN7.2 Ensembl207,722,733 - 7,766,286 (+)Ensembl
Rnor_6.0 Ensembl208,325,041 - 8,368,764 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083108   ⟹   ENSRNOP00000073460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,711,288 - 7,767,463 (+)Ensembl
mRatBN7.2 Ensembl207,709,713 - 7,765,892 (+)Ensembl
Rnor_6.0 Ensembl208,312,792 - 8,368,369 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101461   ⟹   ENSRNOP00000080385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,724,330 - 7,767,858 (+)Ensembl
mRatBN7.2 Ensembl207,722,776 - 7,766,302 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110367   ⟹   ENSRNOP00000092438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,724,352 - 7,778,185 (+)Ensembl
mRatBN7.2 Ensembl207,722,733 - 7,766,286 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111387   ⟹   ENSRNOP00000081353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,724,340 - 7,784,263 (+)Ensembl
mRatBN7.2 Ensembl207,722,733 - 7,766,286 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111715   ⟹   ENSRNOP00000078940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,683,946 - 7,767,858 (+)Ensembl
mRatBN7.2 Ensembl207,730,505 - 7,766,287 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114324   ⟹   ENSRNOP00000090691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,724,344 - 7,770,722 (+)Ensembl
mRatBN7.2 Ensembl207,709,713 - 7,765,567 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000132629   ⟹   ENSRNOP00000109922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,724,344 - 7,770,722 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148048   ⟹   ENSRNOP00000100380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,702,753 - 7,770,722 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000149277   ⟹   ENSRNOP00000102805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,732,117 - 7,770,722 (+)Ensembl
RefSeq Acc Id: NM_001014031   ⟹   NP_001014053
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,724,368 - 7,767,858 (+)NCBI
mRatBN7.2207,722,794 - 7,766,287 (+)NCBI
Rnor_6.0208,325,041 - 8,368,764 (+)NCBI
Rnor_5.02010,524,633 - 10,568,581 (+)NCBI
RGSC_v3.4207,970,034 - 8,014,387 (+)RGD
Celera209,260,397 - 9,304,373 (+)RGD
Sequence:
RefSeq Acc Id: XM_039098716   ⟹   XP_038954644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,724,626 - 7,767,858 (+)NCBI
mRatBN7.2207,722,982 - 7,766,289 (+)NCBI
RefSeq Acc Id: XM_039098717   ⟹   XP_038954645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,724,286 - 7,784,787 (+)NCBI
mRatBN7.2207,722,731 - 7,782,579 (+)NCBI
RefSeq Acc Id: XM_039098718   ⟹   XP_038954646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,724,286 - 7,754,116 (+)NCBI
mRatBN7.2207,722,729 - 7,750,824 (+)NCBI
RefSeq Acc Id: NP_001014053   ⟸   NM_001014031
- UniProtKB: Q5U2Z5 (UniProtKB/Swiss-Prot),   A6JJV9 (UniProtKB/TrEMBL),   A0A8I6AHL4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000640   ⟸   ENSRNOT00000000640
Ensembl Acc Id: ENSRNOP00000073460   ⟸   ENSRNOT00000083108
RefSeq Acc Id: XP_038954646   ⟸   XM_039098718
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954645   ⟸   XM_039098717
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GIF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954644   ⟸   XM_039098716
- Peptide Label: isoform X1
- UniProtKB: Q5U2Z5 (UniProtKB/Swiss-Prot),   A6JJV9 (UniProtKB/TrEMBL),   A0A8I6AHL4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090691   ⟸   ENSRNOT00000114324
Ensembl Acc Id: ENSRNOP00000080385   ⟸   ENSRNOT00000101461
Ensembl Acc Id: ENSRNOP00000081353   ⟸   ENSRNOT00000111387
Ensembl Acc Id: ENSRNOP00000092438   ⟸   ENSRNOT00000110367
Ensembl Acc Id: ENSRNOP00000078940   ⟸   ENSRNOT00000111715
Ensembl Acc Id: ENSRNOP00000102805   ⟸   ENSRNOT00000149277
Ensembl Acc Id: ENSRNOP00000109922   ⟸   ENSRNOT00000132629
Ensembl Acc Id: ENSRNOP00000100380   ⟸   ENSRNOT00000148048
Protein Domains
G-patch   RrmJ-type SAM-dependent 2'-O-MTase   WW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2Z5-F1-model_v2 AlphaFold Q5U2Z5 1-837 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701464
Promoter ID:EPDNEW_R11988
Type:initiation region
Name:Cmtr1_1
Description:cap methyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0208,325,013 - 8,325,073EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307801 AgrOrtholog
BioCyc Gene G2FUF-4365 BioCyc
Ensembl Genes ENSRNOG00000000532 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000640.5 UniProtKB/Swiss-Prot
  ENSRNOT00000101461 ENTREZGENE
  ENSRNOT00000111387 ENTREZGENE
Gene3D-CATH 3.40.50.12760 UniProtKB/Swiss-Prot
  DNA ligase/mRNA capping enzyme UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7110279 IMAGE-MGC_LOAD
InterPro G_patch_dom UniProtKB/Swiss-Prot
  mRNA_Cap_2O-Ribose_MeTrfase UniProtKB/Swiss-Prot
  RrmJ-type_MeTrfase UniProtKB/Swiss-Prot
  rRNA_MeTrfase_FtsJ_dom UniProtKB/Swiss-Prot
  SAM-dependent_MTases UniProtKB/Swiss-Prot
  WW_dom UniProtKB/Swiss-Prot
KEGG Report rno:309656 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93808 IMAGE-MGC_LOAD
NCBI Gene 309656 ENTREZGENE
PANTHER PTHR16121:SF0 UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam FtsJ UniProtKB/Swiss-Prot
  G-patch UniProtKB/Swiss-Prot
PhenoGen Cmtr1 PhenoGen
PROSITE G_PATCH UniProtKB/Swiss-Prot
  SAM_MT_RRMJ UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000532 RatGTEx
SMART G_patch UniProtKB/Swiss-Prot
  SM00456 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot
UniProt A0A8I5ZLY9_RAT UniProtKB/TrEMBL
  A0A8I5ZPP4_RAT UniProtKB/TrEMBL
  A0A8I5ZSC9_RAT UniProtKB/TrEMBL
  A0A8I6AHL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIF5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LC82_RAT UniProtKB/TrEMBL
  A0ABK0LJH7_RAT UniProtKB/TrEMBL
  A0ABK0LXQ5_RAT UniProtKB/TrEMBL
  A6JJV9 ENTREZGENE, UniProtKB/TrEMBL
  CMTR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6QI79_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-01 Cmtr1  cap methyltransferase 1  Ftsjd2  FtsJ methyltransferase domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Ftsjd2  FtsJ methyltransferase domain containing 2  RGD1307801  similar to RIKEN cDNA 1300018I05  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307801  similar to RIKEN cDNA 1300018I05  RGD1307801_predicted  similar to RIKEN cDNA 1300018I05 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307801_predicted  similar to RIKEN cDNA 1300018I05 (predicted)  LOC309656_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC309656_predicted  similar to RIKEN cDNA 1300018I05 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL