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Gene: 9330159F19Rikl (RIKEN cDNA 9330159F19 gene like) Rattus norvegicus

Analyze

Symbol:

9330159F19Rikl (Ensembl: Kiaa0408L)

Name:

RIKEN cDNA 9330159F19 gene like (Ensembl:Kiaa0408-like)

RGD ID:

1307525

Description:

Orthologous to human KIAA0408 (KIAA0408); INTERACTS WITH bisphenol A; fenvalerate; titanium dioxide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Kiaa0408; Kiaa0408-like; Kiaa0408L; LOC100363248; LOC292199; LOC308053; RGD1307525; RGD1310049; similar to intracellular protein transport like (XM453); similar to KIAA0408 gene product; SOGA family member 3; Soga3; Temporarily Assigned Gene name family member (tag-241)-like; uncharacterized protein KIAA0408 homolog; uncharacterized protein LOC292199

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIAA0408 (KIAA0408)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	9330159F19Rik (RIKEN cDNA 9330159F19 gene)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kiaa0408 (KIAA0408 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIAA0408 (KIAA0408 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIAA0408 (KIAA0408)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kiaa0408 (KIAA0408 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIAA0408 (KIAA0408)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIAA0408 (KIAA0408 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kiaa0408 (KIAA0408 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Kiaa0408 (KIAA0408 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UBE2G1 (ubiquitin conjugating enzyme E2 G1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	9330159F19Rik (RIKEN cDNA 9330159F19 gene)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	9330159F19Rik (RIKEN cDNA 9330159F19 gene)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	KIAA0408	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	KIAA0408	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	soga3a (SOGA family member 3a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	KIAA0408	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	30,444,202 - 30,469,195 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	30,444,208 - 30,453,155 (-)	Ensembl				GRCr8
mRatBN7.2	1	28,615,600 - 28,630,309 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	28,615,606 - 28,630,309 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	28,410,782 - 28,425,489 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	34,410,635 - 34,425,342 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	28,611,398 - 28,626,105 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	30,008,607 - 30,023,271 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	1	29,333,338 - 29,348,002 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	1	30,499,518 - 30,514,184 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	1	28,804,485 - 28,819,187 (-)	NCBI		F344_StmMcwi
Rnor_6.0	1	31,040,142 - 31,055,453 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	31,040,142 - 31,055,453 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	32,469,423 - 32,484,734 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	29,411,079 - 29,494,908 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	27,281,962 - 27,296,664 (-)	NCBI		Celera
Cytogenetic Map	1	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

dorsomorphin (ISO)

fenvalerate (EXP)

methylmercury chloride (ISO)

okadaic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

titanium dioxide (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15632090

Genomics

Comparative Map Data

9330159F19Rikl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	30,444,202 - 30,469,195 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	30,444,208 - 30,453,155 (-)	Ensembl				GRCr8
mRatBN7.2	1	28,615,600 - 28,630,309 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	28,615,606 - 28,630,309 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	28,410,782 - 28,425,489 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	34,410,635 - 34,425,342 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	28,611,398 - 28,626,105 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	30,008,607 - 30,023,271 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	1	29,333,338 - 29,348,002 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	1	30,499,518 - 30,514,184 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	1	28,804,485 - 28,819,187 (-)	NCBI		F344_StmMcwi
Rnor_6.0	1	31,040,142 - 31,055,453 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	31,040,142 - 31,055,453 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	32,469,423 - 32,484,734 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	29,411,079 - 29,494,908 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	27,281,962 - 27,296,664 (-)	NCBI		Celera
Cytogenetic Map	1	p11	NCBI

KIAA0408
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	127,438,406 - 127,459,389 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	127,438,406 - 127,459,393 (-)	Ensembl			hg38	GRCh38
GRCh37	6	127,759,551 - 127,780,534 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	127,803,428 - 127,838,552 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	127,803,428 - 127,838,552	NCBI
Celera	6	128,501,795 - 128,522,779 (-)	NCBI		Celera
Cytogenetic Map	6	q22.33	NCBI
HuRef	6	125,336,237 - 125,357,220 (-)	NCBI		HuRef
CHM1_1	6	128,023,805 - 128,044,786 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	128,627,332 - 128,648,316 (-)	NCBI		T2T-CHM13v2.0

9330159F19Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	29,074,937 - 29,106,775 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	29,087,602 - 29,106,775 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	29,198,942 - 29,230,779 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	29,211,606 - 29,230,779 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	28,931,449 - 28,950,585 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	28,907,536 - 28,916,787 (+)	NCBI		MGSCv36	mm8
Celera	10	30,143,320 - 30,162,948 (+)	NCBI		Celera
Cytogenetic Map	10	A4	NCBI
cM Map	10	16.55	NCBI

Kiaa0408
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	8,455,089 - 8,482,633 (-)	Ensembl
ChiLan1.0	NW_004955436	8,452,558 - 8,471,086 (-)	NCBI	ChiLan1.0	ChiLan1.0

KIAA0408
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	147,434,660 - 147,469,482 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	145,343,360 - 145,378,184 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	125,228,765 - 125,263,582 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	129,341,020 - 129,378,332 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	129,346,738 - 129,378,332 (-)	Ensembl			panPan2	panpan1.1

KIAA0408
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	66,136,318 - 66,151,960 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	66,935,931 - 66,955,113 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	66,333,781 - 66,356,335 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	66,334,562 - 66,352,994 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	66,263,191 - 66,282,381 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	66,047,744 - 66,078,137 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	66,690,246 - 66,720,708 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kiaa0408
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	116,137,316 - 116,170,413 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936639	2,257,661 - 2,277,383 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936639	2,246,771 - 2,277,809 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIAA0408
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	35,762,326 - 35,774,519 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	35,742,560 - 35,783,465 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

KIAA0408
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	46,216,179 - 46,248,424 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	46,215,921 - 46,248,983 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	18,464,463 - 18,496,829 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kiaa0408
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	1,832,756 - 1,863,701 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624753	1,833,161 - 1,863,571 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kiaa0408
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	203,583,417 - 203,617,581 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in 9330159F19Rikl
168 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	5293229	34184556	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	7746118	52746118	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	7746121	52746121	Rat
1357397	Bw41	Body weight QTL 41	4.19	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	29409279	74409279	Rat
70179	Xhs2	X-ray hypersensitivity QTL 2	3.2		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	1	1	43965634	Rat
1558642	Prcr2	Prostate cancer resistance QTL 2	4.3		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	1	10379492	55379492	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	6941022	51941022	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	5293229	34184556	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	6909353	51909353	Rat
631494	Bp95	Blood pressure QTL 95	40	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	17315378	51816258	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	6909353	51909353	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	7e-07	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	6909353	51909353	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	12820494	57820494	Rat
2317755	Glom22	Glomerulus QTL 22	3.8		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	1	34184556	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	20656420	65656420	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	20508326	65508326	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	11684464	56684464	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	5293229	34184556	Rat

Markers in Region

RH142727

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	28,615,598 - 28,615,704 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	31,040,135 - 31,040,240	NCBI	Rnor6.0
Rnor_5.0	1	32,469,416 - 32,469,521	UniSTS	Rnor5.0
RGSC_v3.4	1	29,411,083 - 29,411,188	UniSTS	RGSC3.4
Celera	1	27,281,955 - 27,282,060	UniSTS
RH 3.4 Map	1	315.0	UniSTS
Cytogenetic Map	1	p11	UniSTS

AW533355

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	28,697,548 - 28,697,738 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	31,121,329 - 31,121,518	NCBI	Rnor6.0
Rnor_5.0	1	32,549,790 - 32,549,979	UniSTS	Rnor5.0
RGSC_v3.4	1	29,493,815 - 29,494,004	UniSTS	RGSC3.4
Celera	1	27,359,523 - 27,359,712	UniSTS
RH 3.4 Map	1	318.3	UniSTS
Cytogenetic Map	1	p11	UniSTS

RH137787

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	28,616,209 - 28,616,393 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	31,040,746 - 31,040,929	NCBI	Rnor6.0
Rnor_5.0	1	32,470,027 - 32,470,210	UniSTS	Rnor5.0
RGSC_v3.4	1	29,411,694 - 29,411,877	UniSTS	RGSC3.4
Celera	1	27,282,566 - 27,282,749	UniSTS
Cytogenetic Map	1	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	67	162	73	72	41	43	41	6	273	143	11	141	66	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001144859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031083 ⟹ ENSRNOP00000035937

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	30,444,208 - 30,453,155 (-)	Ensembl
mRatBN7.2 Ensembl	1	28,615,606 - 28,630,309 (-)	Ensembl
Rnor_6.0 Ensembl	1	31,040,142 - 31,055,453 (-)	Ensembl

RefSeq Acc Id:

NM_001144859 ⟹ NP_001138331

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,444,208 - 30,458,910 (-)	NCBI
mRatBN7.2	1	28,615,606 - 28,630,309 (-)	NCBI
Dahl_SR_JrHsd	1	30,008,607 - 30,023,271 (-)	NCBI
Lyon_Normotensive	1	29,333,338 - 29,348,002 (-)	NCBI
Lyon_Hypertensive	1	30,499,518 - 30,514,184 (-)	NCBI
F344_StmMcwi	1	28,804,485 - 28,819,187 (-)	NCBI
Rnor_6.0	1	31,040,142 - 31,055,453 (-)	NCBI
Celera	1	27,281,962 - 27,296,664 (-)	NCBI

Sequence:

show sequence

GACACTGAGCTCAGAAGTCCTCTGAGGGTGCAGTTTGCAAAGGGGTTTGTCAGGACTGCTGTGG
GAAATGGATGGACTTTGTTTTGTAAAAGAATCACTGCTCTTTAAGACAACTAGCTCTCTGCCCC
GCCTCTTCCATTGCTAGACTGGTCACGCAGAGCCTGACTTGCTGCAGGACGACCCCCAAGTGCG
AGGAGGCTTTATTCTAAAGGCAAGTGAGACCACTTCAAATCACAGTTTAACAATTCCAAGCTAA
GAGAAGGCAGAGATGAGCAGAAATCCTTTGGCTGACGCGTACACAGTTGCCGTGGACCTGCATG
AGCAGTGCGAGACCACAGAGGCCAACTGGCATAAGGAAAAGATGGAGTTACTGGACCAGTTTGA
CAATGAAAGAAAAGAATGGGAGAGTCAGTGGAGGATCATGCAGAAGAGGATCGAAGAGCTCTGC
CAGGAAGTCAAGCTGCGGAGGAAAATGAACATGAATGAACATTCTAAGGTCATTTGTCTTTGTC
ATGATCAAGATAAAATGGAATTTCCTCCAAATCCAAACTTAGGACAATGCGAATTCAGAGTGTT
CAACCACCGAGATGATCCAGAAAAGGAAAAGAAAAGAGAAAGGGATTTCCTTGGGGAAGAAAGT
CAAGTGTCTCCAGAACAAAATATACACAGAGAAACCAAAGTGGGGTTTCAGAATCCTTTGGCCA
CAGACAGGAAGGCATGTGAGGCTTGGGCTGGTGAGACGACCTCTAAGGATAGTAAAGATTGTTC
TGTCGCCCTTAACACCGCTCTTGAAGAACTTGCAAAAGTTAGTGAAGAATTGTGCACCTTTCAA
GAGGAAATCCGAAAGCGTGCTAACCACAGAAGGATGAAATCAGATCCTGTTCTGCAGGAAATGC
CAAATGTAACCCATGTGCCTCATGAGGACCACTTGATCAGCAATGGCCAGGTCATTCTTCTAAC
CAATTTGGAGAAAGAAAAGCAGAGCAAGAATCCGAGCTGCCAATGGACTCCAAAACAGTTCTGT
GGGCAACTGTGTTCCATTGGCACAACTGGTTTACAAAGAACCGCAACACCACCAGCTCCTCCTC
CAAGAAGTACCTCTCGGAATCTTTCCAGGTCATATTCTGAACAAGCCCAGGAAAGACTGAAGGA
AAGTTTATACCACAGGTGGGTGGCCCATGAGAGTCAAGACAAAACAAATAACAATCCTCATTTC
CTCTTGAGGCAGTCCCCATTGTTTCCACAAGAAGGCAAGAGTATGAAAGACAGTACCATGTTTT
CCTCTTGGATACCAGAAGTCAAACTAGATAGACAGCTTCCAGGTAACAAAGACATTGGACTTAA
TTTGTGGTCATGTGACACTGTATTAGGTACAAAAGAGAGCCTTTCCAGGCCATCTCAAAAAACT
GGTTTTACCTCCAGTGCAGCAAAATCTGCTAAGGTGACTCCAGATAACCCTATGAAATCGCATC
TTGATCTTCATGTGAAAAATGACTTTCTTCCCTCAGTGACACTGAGGGACCCAGTTAGAAGTTA
CAACTACAACTTTGAACCAACTCCAAGGAATGAAAAGCTGGCCGCAAAGATCGATGAGTTGCAC
AGAACGGTTTTTAGAACAGACAGAGGTTGTCAAGCAATACAGGAAAATGAAAGCTATACAAAAT
CACCTGACAATCTCAATACCTGTGCTGTCTCTACTGCTCACAGAGCTGACATACCAGAAAGTGA
CAAAGGGACCAGCGTTCTGAAAGAGACTGACAGCGTGCCTGTGCCCATGGAAAATGTGTTCAGT
GATCCCACAGAAGCATCCACAGTAGGCCTGCTCAAACAAATGCAGACACGAGAGAGTCCCAGCA
GCTGTCAGCTGATGTCCCATGAGCATGACTGGAGACCAAGCGATTTTTCTAGCCGGCCAAGGTC
AGCTGATCCCAAATCAAATTACGGTGTTGTGGAAAAGTTGTTGAAAACCTATGAGACTGAGACA
AGGTCTGCACTGCAAAATTCAAAATGCTTCAGGGATAACTGGACCAAATGTGGTTCTGATGAGT
CCATAGCAGTGAAAGCCTCCAATGGAAAAGGATTTTCCCGACCTGCCAGACCAGCCAATCGCCG
GCTCCCATCCAGATGGGCCTCCCGATCACCATCTGCACCCCCAGCCTTGCGGAGGAACCCACAG
CTATAAAGTCTCTCTGCAAACCGAAGCCCAGACGCTCTAGGTCTCTAGCCTGGATTGCTGGATT
ACAAAGGCTATCATACCTTTTGCTAAACTGAATCTTCAGAATGTTTACAAACAGTCCTGTTCTC
ATCTGTATCTTCTAAGACCACTGGGACAAGCAATCCAAATCCTAGCTTTCCATCAGTCTTCAGT
GTTTTTAATCTATGGGATCATTATCTCCTTGTACTTTAATTTCTCACATTAGATTTTTTATTGC
CATCCTCATTGATTTTCTGACATGATTTAAGTTGACACGATGTACTATATTGTATATTCTAACT
TTCCTTGCAAATGCAGAAAAACAAGGTTCTGTGCATGGCCATGTGTTTGTGGGTGCATGTGTTG
TCATAGGAAGTATTCTGGTATGTATTTAGGTAAAAATTTATGTGCTAGTGTTGAGTTTGAAATT
ATAACATGTAGACCTATATATTCTTTGTGTTTATTTTAGAGTTTTGAAAATATACAATCCTATT
TATATTTTGCATAGCGTTTAACAGGTACTCAAACTAAGGCATTTGACATTCATGTATCACTTAA
TGACTTCCTTGGCGACCAACTATATTGAAAAATTAAGAATTATACACAAACCTAAGATTAACAG
TTTTCCAGAAATCAATCTTAAATAGCATTTTAACCCATATGAAGATAACTGATACTGCTCATTT
CTTGTTAAATGAAAATGTCACAGGTTTAATATACCAGCTTTCTCAAACAAGCATAATATGCTCA
CACATGCTTTTATATATCACCTGGTAGTCTCACGTGGTTTAATTGTATACTTGACTCTCAGCCA
GGATAATTAGACTCCCTTAGTAATGACAGGACACAGTAGTGGGTTTATTTTATCATTCTCATTA
ACAAACATTTCTTAAATGAGATAAAGAAAGGAATCAAATCGTGCTAAATTCTCCTTTTTGTTAA
AATTGTCCCGAGTTTTCAGTTGTTTGCTTTATCTGGAGTTCCTTTGTTGAGGTAAGTTGTTTGG
GTTTTGTTTGTTTTTTTGTTTTTTTGTTTTTCTCCTTCCTCTTTTCTAATAATTTCCCCAAAAT
TAGTAGATAAGACTAATTCACTTTTTATGTACAATAAGAATGATCAGGAACAAGTTTTGCTGAC
AGCTCAGTTATATTGTATTTCTTACACTGTATAAAAAGGCCTTAAACTGAATCAGGCATTGCTA
AGACACAATGATGTACATCAAAGGTATAAAGTGATTACACCTGATGCATGAAGTCTATACTGAG
AAGTGGCATAGGAGAAGTACAAGACTTAAGGTACTTAGAATCCTATATGGATCAACTTAGACAC
AACTTTGCTGTGCATTGTTCCCATTTAAAAATCAATCCTATTACATGGTTTGTTAAATATTAAT
TCAATTTTATCCAAAAATCTTAAGAAATCCTCTTTTCCAAACAAAATCTGTGGGCTTTCTGCCT
ATAATATCCTAGCCACTAAGAGGATTCCACCTTGTTATACCATTCCCTGAAGTAAAACACACAC
ACACACACACAAATAACTTTAAATCACAGATTGCCTTAAAAGGCTTGCGACTGTAGTTCATGGT
TTACAGTAAGAAGACTTCTAGGGCTTAAGTGGTATTAAGTGTCTAGAATGTGAGTTTGGCACAA
ATCATGAAGGTTATAGTTCTACTTTTCTCAGTCTTGCATCCTTCAGGGAACTTTTTCTACCACA
GGAGAGTAGCCTAGACACTTTTCCACTAGAGGAGAGAAAACACTGGAAAAGGGGTTCCTTGGGG
CATGAAATGATAACCCAAAACCATTGCTGTGGTCATGTCTGTTTCTTGGTGTCCCTGAATCCCA
GGCAGCCTGAGAACAATCTGTAGCCCCTGTCTTCATGTTCAAATCTGAGTGTTGAGGTCTCCTT
TAAAGATGGAAAAAATCCTGATCTCATCCCAAAAATAATAAAGAAAGATTTCCAGC

hide sequence

RefSeq Acc Id:

XM_039103346 ⟹ XP_038959274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,444,202 - 30,451,226 (-)	NCBI
mRatBN7.2	1	28,615,600 - 28,622,626 (-)	NCBI

RefSeq Acc Id:

XM_063282835 ⟹ XP_063138905

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,444,202 - 30,469,195 (-)	NCBI

RefSeq Acc Id:

XM_063282836 ⟹ XP_063138906

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,444,202 - 30,458,694 (-)	NCBI

RefSeq Acc Id:

XM_063282837 ⟹ XP_063138907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,444,202 - 30,453,125 (-)	NCBI

RefSeq Acc Id:

XM_063282838 ⟹ XP_063138908

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,444,202 - 30,469,195 (-)	NCBI

RefSeq Acc Id:

XM_063282840 ⟹ XP_063138910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,444,202 - 30,469,195 (-)	NCBI

RefSeq Acc Id:

XM_063282843 ⟹ XP_063138913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,444,202 - 30,469,195 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001138331	(Get FASTA)	NCBI Sequence Viewer
	XP_038959274	(Get FASTA)	NCBI Sequence Viewer
	XP_063138905	(Get FASTA)	NCBI Sequence Viewer
	XP_063138906	(Get FASTA)	NCBI Sequence Viewer
	XP_063138907	(Get FASTA)	NCBI Sequence Viewer
	XP_063138908	(Get FASTA)	NCBI Sequence Viewer
	XP_063138910	(Get FASTA)	NCBI Sequence Viewer
	XP_063138913	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87690	(Get FASTA)	NCBI Sequence Viewer
	EDL87691	(Get FASTA)	NCBI Sequence Viewer
	EDL87692	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035937
	ENSRNOP00000035937.5

RefSeq Acc Id:

NP_001138331 ⟸ NM_001144859

- UniProtKB:

A6JUT7 (UniProtKB/TrEMBL), A6JUT8 (UniProtKB/TrEMBL), D3ZYL2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRNPLADAYTVAVDLHEQCETTEANWHKEKMELLDQFDNERKEWESQWRIMQKRIEELCQEVK
LRRKMNMNEHSKVICLCHDQDKMEFPPNPNLGQCEFRVFNHRDDPEKEKKRERDFLGEESQVSP
EQNIHRETKVGFQNPLATDRKACEAWAGETTSKDSKDCSVALNTALEELAKVSEELCTFQEEIR
KRANHRRMKSDPVLQEMPNVTHVPHEDHLISNGQVILLTNLEKEKQSKNPSCQWTPKQFCGQLC
SIGTTGLQRTATPPAPPPRSTSRNLSRSYSEQAQERLKESLYHRWVAHESQDKTNNNPHFLLRQ
SPLFPQEGKSMKDSTMFSSWIPEVKLDRQLPGNKDIGLNLWSCDTVLGTKESLSRPSQKTGFTS
SAAKSAKVTPDNPMKSHLDLHVKNDFLPSVTLRDPVRSYNYNFEPTPRNEKLAAKIDELHRTVF
RTDRGCQAIQENESYTKSPDNLNTCAVSTAHRADIPESDKGTSVLKETDSVPVPMENVFSDPTE
ASTVGLLKQMQTRESPSSCQLMSHEHDWRPSDFSSRPRSADPKSNYGVVEKLLKTYETETRSAL
QNSKCFRDNWTKCGSDESIAVKASNGKGFSRPARPANRRLPSRWASRSPSAPPALRRNPQL

hide sequence

Ensembl Acc Id:

ENSRNOP00000035937 ⟸ ENSRNOT00000031083

RefSeq Acc Id:	XP_038959274 ⟸ XM_039103346
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063138905 ⟸ XM_063282835
- Peptide Label:	isoform X1
- UniProtKB:	A6JUT7 (UniProtKB/TrEMBL), D3ZYL2 (UniProtKB/TrEMBL), A6JUT8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138913 ⟸ XM_063282843
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063138910 ⟸ XM_063282840
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063138908 ⟸ XM_063282838
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063138906 ⟸ XM_063282836
- Peptide Label:	isoform X1
- UniProtKB:	A6JUT7 (UniProtKB/TrEMBL), D3ZYL2 (UniProtKB/TrEMBL), A6JUT8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138907 ⟸ XM_063282837
- Peptide Label:	isoform X2
- UniProtKB:	A6JUT8 (UniProtKB/TrEMBL)

Protein Domains

SOGA 1/2-like coiled-coil

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYL2-F1-model_v2	AlphaFold	D3ZYL2	1-637	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307525	AgrOrtholog
BioCyc Gene	G2FUF-61957	BioCyc
Ensembl Genes	ENSRNOG00000042309	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031083	ENTREZGENE
	ENSRNOT00000031083.7	UniProtKB/TrEMBL
InterPro	DUF4482	UniProtKB/TrEMBL
KEGG Report	rno:292199	UniProtKB/TrEMBL
NCBI Gene	Kiaa0408L	ENTREZGENE
PANTHER	MCG7194, ISOFORM CRA_A	UniProtKB/TrEMBL
	RIKEN CDNA 9330159F19 GENE	UniProtKB/TrEMBL
Pfam	DUF4482	UniProtKB/TrEMBL
PhenoGen	9330159F19Rikl	PhenoGen
RatGTEx	ENSRNOG00000042309	RatGTEx
UniProt	A6JUT7	ENTREZGENE, UniProtKB/TrEMBL
	A6JUT8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYL2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-02-04	9330159F19Rikl	RIKEN cDNA 9330159F19 gene like	Kiaa0408L	Kiaa0408-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-02-01	Kiaa0408L	Kiaa0408-like	Soga3	SOGA family member 3	Name and Symbol changed	629549	APPROVED
2015-12-04	Soga3	SOGA family member 3	RGD1310049	similar to KIAA0408 gene product	Data merged from RGD:1310049	737654	APPROVED
2012-11-30	RGD1307525	similar to intracellular protein transport like (XM453)	LOC100363248	Temporarily Assigned Gene name family member (tag-241)-like	Data merged from RGD:2323392	737654	APPROVED
2012-11-30	Soga3	SOGA family member 3	RGD1307525	similar to intracellular protein transport like (XM453)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	RGD1310049	similar to KIAA0408 gene product	RGD1310049	similar to KIAA0408 gene product	Gene reactivated at release of RGSC5.0 assembly	2298974	REACTIVATED
2010-05-06	LOC100363248	Temporarily Assigned Gene name family member (tag-241)-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1307525	similar to intracellular protein transport like (XM453)	RGD1307525_predicted	similar to intracellular protein transport like (XM453) (predicted)	'predicted' is removed	2292626	APPROVED
2008-04-30	RGD1310049	similar to KIAA0408 gene product	RGD1310049_predicted	similar to KIAA0408 gene product (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310049_predicted	similar to KIAA0408 gene product (predicted)	LOC292199_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-20	RGD1307525_predicted	similar to intracellular protein transport like (XM453) (predicted)	LOC308053_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC292199_predicted	similar to KIAA0408 gene product (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	LOC308053_predicted	similar to intracellular protein transport like (XM453) (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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