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Gene: Zfp276 (zinc finger protein (C2H2 type) 276) Rattus norvegicus

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Symbol:

Zfp276

Name:

zinc finger protein (C2H2 type) 276

RGD ID:

1307469

Description:

Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in kinetochore. Orthologous to human ZNF276 (zinc finger protein 276); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC307924; zinc finger protein 276

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF276 (zinc finger protein 276)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zfp276 (zinc finger protein (C2H2 type) 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ITGBL1 (integrin subunit beta like 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZNF276 (zinc finger protein 276)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp276 (zinc finger protein (C2H2 type) 276)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F26A10.2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	znf276	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf276	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	68,199,709 - 68,212,757 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	68,199,265 - 68,212,757 (+)	Ensembl				GRCr8
mRatBN7.2	19	51,291,005 - 51,304,240 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	51,290,777 - 51,304,049 (+)	Ensembl				mRatBN7.2
Rnor_6.0	19	56,054,250 - 56,067,767 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	56,054,212 - 56,067,581 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	66,759,118 - 66,772,638 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	53,575,020 - 53,588,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	50,526,582 - 50,540,099 (+)	NCBI		Celera
RGSC_v3.1	19	53,580,061 - 53,592,948 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Fanconi anemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

caffeine (EXP)

carbon nanotube (ISO)

clofibrate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

glyphosate (ISO)

lead(0) (ISO)

methoxyacetic acid (EXP)

methylmercury chloride (EXP)

Monobutylphthalate (EXP)

ozone (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

sunitinib (ISO)

Testosterone propionate (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

kinetochore (IEA,ISO)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:20813266

Genomics

Comparative Map Data

Zfp276
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	68,199,709 - 68,212,757 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	68,199,265 - 68,212,757 (+)	Ensembl				GRCr8
mRatBN7.2	19	51,291,005 - 51,304,240 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	51,290,777 - 51,304,049 (+)	Ensembl				mRatBN7.2
Rnor_6.0	19	56,054,250 - 56,067,767 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	56,054,212 - 56,067,581 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	66,759,118 - 66,772,638 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	53,575,020 - 53,588,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	50,526,582 - 50,540,099 (+)	NCBI		Celera
RGSC_v3.1	19	53,580,061 - 53,592,948 (+)	NCBI
Cytogenetic Map	19	q12	NCBI

ZNF276
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	89,720,368 - 89,740,925 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	89,720,400 - 89,740,925 (+)	Ensembl			hg38	GRCh38
GRCh37	16	89,786,776 - 89,807,333 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	88,314,934 - 88,333,811 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	88,314,933 - 88,333,811	NCBI
Celera	16	74,851,642 - 74,871,575 (+)	NCBI		Celera
Cytogenetic Map	16	q24.3	NCBI
HuRef	16	75,482,473 - 75,502,544 (+)	NCBI		HuRef
CHM1_1	16	91,198,621 - 91,218,535 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	95,805,134 - 95,825,676 (+)	NCBI		T2T-CHM13v2.0

Zfp276
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	123,980,934 - 123,997,290 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	123,980,934 - 123,996,484 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	123,254,195 - 123,270,551 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	123,254,195 - 123,269,745 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	125,778,095 - 125,794,451 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	126,142,032 - 126,155,826 (+)	NCBI		MGSCv36	mm8
Celera	8	127,493,764 - 127,509,992 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	72.09	NCBI

Znf276
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955541	3,259,479 - 3,272,666 (+)	Ensembl
ChiLan1.0	NW_004955541	3,259,945 - 3,272,990 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF276
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	99,566,702 - 99,585,445 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	105,456,293 - 105,474,201 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	70,478,127 - 70,498,672 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	90,147,294 - 90,165,192 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	90,147,474 - 90,165,192 (+)	Ensembl			panPan2	panpan1.1

ZNF276
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	63,838,818 - 63,857,742 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	63,838,987 - 63,857,924 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	63,849,208 - 63,870,613 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	64,063,920 - 64,085,545 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	64,066,428 - 64,085,665 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	64,084,241 - 64,105,646 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	63,921,878 - 63,943,253 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	64,328,375 - 64,349,807 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf276
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	24,566,258 - 24,580,243 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936641	320,143 - 332,424 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936641	305,423 - 332,312 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF276
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	298,039 - 313,403 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	298,034 - 316,451 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	425,664 - 442,983 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF276
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	75,057,541 - 75,073,328 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	75,057,253 - 75,073,023 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	422,156 - 438,074 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf276
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	252,631 - 266,680 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	252,631 - 266,789 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf276
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	42,860,647 - 42,874,209 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	263
Count of miRNA genes:	173
Interacting mature miRNAs:	195
Transcripts:	ENSRNOT00000022324, ENSRNOT00000066034
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	61249161	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

D19Got120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	68,198,678 - 68,198,779 (+)	Marker Load Pipeline
mRatBN7.2	19	51,290,160 - 51,290,261 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	56,053,689 - 56,053,789	NCBI	Rnor6.0
Rnor_5.0	19	66,758,561 - 66,758,661	UniSTS	Rnor5.0
RGSC_v3.4	19	53,573,990 - 53,574,090	UniSTS	RGSC3.4
Celera	19	50,526,021 - 50,526,121	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH134128

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	51,302,109 - 51,302,315 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	56,065,637 - 56,065,842	NCBI	Rnor6.0
Rnor_5.0	19	66,770,509 - 66,770,714	UniSTS	Rnor5.0
RGSC_v3.4	19	53,585,938 - 53,586,143	UniSTS	RGSC3.4
Celera	19	50,537,969 - 50,538,174	UniSTS
RH 3.4 Map	19	710.21	UniSTS
Cytogenetic Map	19	q12	UniSTS

MARC_12315-12316:1005759661:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	68,209,434 - 68,209,842 (+)	Marker Load Pipeline
mRatBN7.2	19	51,300,916 - 51,301,325 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	56,064,444 - 56,064,852	NCBI	Rnor6.0
Rnor_5.0	19	66,769,316 - 66,769,724	UniSTS	Rnor5.0
RGSC_v3.4	19	53,584,745 - 53,585,153	UniSTS	RGSC3.4
Celera	19	50,536,776 - 50,537,184	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002725424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002728603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022324 ⟹ ENSRNOP00000022324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	68,199,265 - 68,212,757 (+)	Ensembl
mRatBN7.2 Ensembl	19	51,290,777 - 51,304,049 (+)	Ensembl
Rnor_6.0 Ensembl	19	56,054,212 - 56,067,581 (+)	Ensembl

RefSeq Acc Id:

XM_002728603 ⟹ XP_002728649

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	68,199,709 - 68,212,757 (+)	NCBI
mRatBN7.2	19	51,291,005 - 51,304,240 (+)	NCBI
Rnor_6.0	19	56,054,250 - 56,067,767 (+)	NCBI
Rnor_5.0	19	66,759,118 - 66,772,638 (+)	NCBI
RGSC_v3.4	19	53,575,020 - 53,588,068 (+)	RGD

Sequence:

show sequence

GATACACTTCCGCCGGCCCCGCCCCGCCGCGCAGAACTGGGTTTACCGATTAGAGGGGGTCAGG
TGGGTCTTGTCAGCTATTCTGTCGGACTTACTCTGAGTGTCGACGAGAAGACTGGTGGAAAGAA
CCTCACGTTTTGAGGTTTTCTAAGTGCCACAGCCCGTGCGTCAGTTCGAGGCAGTTTACCCTCC
CGGGTGCTCCTCCTTTATGGGCCAGTCGCAAGTTCTGAGCGACCCTAAGAACTCTGGGCTCTCG
ACACAGCAGTGGCTACTGTGGCTCCTGGGCCGCTCCCCACTTCGCTCCACCCCTCGTTCACCAG
GCTCAGATCTCGGGGAGCCGAGCGGAGCCGAACGGCGCGGCGGAGTGTAGCGGAACGGGACTGA
GTGAAGTTAAGTCCGCTCTAGCAGAACTCAGTGAGCCGAGCCACACGGAATAGCACGGAGCGGG
GATCAAGTGGCGGCTGCCGCCATGAAGCGGGACCGACTCGGCCGCTTCCTGTCTCCTGGAATAG
CTCGGCAGCGCGGGAGTTCGGGCAGCAGCTGTGGAAGCGGTCGGACTCGGGGTCGCCCTTCTCG
CACCGGCGGATCGAGCGCTGACGGGGCGGCTCCTCAACTCAGCTGGGGCTCGACGCGCTCCTGC
GGGGACACGGGCGAGGACGGCACAGACGAGGCAGGAGCAGGCCGGACTCTCACCATGGGGCACT
GTCGTCTCTGCCATGGGAAGTTTTCCTCACGGAGCCTCCGAAGCATCTCTGAGAGAGTGCCTGG
GGAGACCTCAGAGAGATTGTCCCCAGGGGAGCGTGTCTTCATCAGGGACTTCCAGCGTCTGCTG
GGTGTTGCTGTGCACCAGGACCCAGCCCTGCCTCAGTTTGTCTGCAAGAACTGCTACACCCAAT
TCTATCAGTGCCACAGCCTTCTCAGGTCCTTCTTACAGAGAGTCAATGTCTCCCCAGCTGGCCA
GCGGAAACCTTGTACAAAGGTCGGTGTTCAGCCTCCCACAGTGGCAGAGGAGGGAGCATGTATG
GCTGATCTGATCACCTCGAGCCCTCAGTGTCTGCACGGCTTGGTGGGCTGGGTGCATGAGCATG
CAGTCAACTGTGGGTGTCTGCCCAGCCTTCAGAGGACACTGTCCTCTGAGTACTGCGGCGTCAT
CCAGGCTGTGTGGGGCTGCGACCAGGGCCATGACTTCACCATGGACACAGACTCCGGCTGCAGA
GCTCTCCTTTTGGACAGTGCATTAGCAGTGAAATGGGGAAAGGAACTAGCACCACGGCTGGCCC
AGAGCTCAGCGTCAGACCCCACTGGAGCTGCCTCTCAGCTCTGCCAGGCCAGAGAAACTCAAGT
TGGATCTGAGACCAAGACATTGCCCAGTGTGGATGTGGCCCTGCTGCACTCACATGGAGACTCT
GTGGGACCTGGGCTAAGCCCCTATATACAGCCAAACTTGGCTCCCAGTGAGGCCCCAGGGCAAC
TGGGTGAGAAGCAGGTTCCATCTTCAACCTCGGATGATCGGGTAAAAGACGAGTTCAGTGACCT
TTCTGAGGGAGACGTCCTGAGTGAAGATGACAGTGATAAGAAGCAAACCCCACAGTCCTCGGAT
GAGTCCTTTGAGCCTTACCCAGAAAAGAAGGTCTCTGGTAAGAAGAGTGAAGGCAAAGAAGCCA
AGAGGCCTGAAGAGCCCAAAATCAGAAAGAAGCCAGGCCCCAAGCCTGGATGGAAGAAAAAGCT
CCGCTGTGAGAGGGAGGAGCTGCCCACCATCTACAAGTGTCCTTACCAGGGCTGCACAGCTGTA
TACCGGGGGGCTGACGGCATGAAGAAGCACATTAAGGAGCACCATGAGGAGGTCCGGGAAAGGC
CCTGCCCACACCCTGGTTGCAACAAGGTATTCATGATCGACCGATACCTACAGCGACACGTGAA
GCTCATCCACACAGAGGTACGCAATTACATCTGTGACGAATGTGGGCAGACCTTCAAGCAGCGG
AAGCACCTTCTTGTCCACCAGATGCGCCACTCAGGAGCCAAGCCACTGCAGTGTGAGGTCTGTG
GGTTCCAGTGCAGGCAACGAGCGTCCCTCAAGTACCACATGACCAAACACAAAGCAGAGACTGA
GCTGGATTTCGCCTGTGACCAGTGCGGCCGGCGGTTTGAAAAAGCCCACAACCTCAACGTGCAT
ATGTCCATGGTCCATCCTCTGACCCAGACCCAAGCCCTGCCTTTGGAAGCAGAGCCACCACCTG
GGCCTCTGAGCCTCGCTGGGACCGTGGAGGGCCAGGCTGTGAAGCCCGAGCCGACCTGAGGACT
GACTGCAGGCGGACAGACCGCTGGACGTGGAGCAGCTGGAACGCAGCCGTGATGTGAGGTCAAG
GACAGTTCCACTCACGTTCCTCACTCCCCCCCTGGCACAGTTCTGCTTGCTTGTTGGATCCCGT
GCTACACCCACTCACAGAGCCAGCAGCCATATGGTGGAGGGCACCTCTCTCGGGCTGAGAGCGT
GTACTTCAACCCGCTGTGGTACCAGCAGTTTTATTTTCCTATGGACACCGAACAATAAGGCCAG
ACACAGATTATGAATAATTAATTTCTCTTTTCCTAACCAGAGCAGTCGAGGAGATTTGTAATCC
ACTTTCTAGTGTAACAAGAACTCCATGTTATGCTTGCAATAAATTATTCACAAAGGTG

hide sequence

RefSeq Acc Id:

XR_005496931

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	68,199,709 - 68,209,364 (+)	NCBI
mRatBN7.2	19	51,291,005 - 51,300,847 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012058	(Get FASTA)	NCBI Sequence Viewer
	XP_002728649	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79416	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022324
	ENSRNOP00000022324.4

RefSeq Acc Id:

XP_002728649 ⟸ XM_002728603

- Sequence:

show sequence

MKRDRLGRFLSPGIARQRGSSGSSCGSGRTRGRPSRTGGSSADGAAPQLSWGSTRSCGDTGEDG
TDEAGAGRTLTMGHCRLCHGKFSSRSLRSISERVPGETSERLSPGERVFIRDFQRLLGVAVHQD
PALPQFVCKNCYTQFYQCHSLLRSFLQRVNVSPAGQRKPCTKVGVQPPTVAEEGACMADLITSS
PQCLHGLVGWVHEHAVNCGCLPSLQRTLSSEYCGVIQAVWGCDQGHDFTMDTDSGCRALLLDSA
LAVKWGKELAPRLAQSSASDPTGAASQLCQARETQVGSETKTLPSVDVALLHSHGDSVGPGLSP
YIQPNLAPSEAPGQLGEKQVPSSTSDDRVKDEFSDLSEGDVLSEDDSDKKQTPQSSDESFEPYP
EKKVSGKKSEGKEAKRPEEPKIRKKPGPKPGWKKKLRCEREELPTIYKCPYQGCTAVYRGADGM
KKHIKEHHEEVRERPCPHPGCNKVFMIDRYLQRHVKLIHTEVRNYICDECGQTFKQRKHLLVHQ
MRHSGAKPLQCEVCGFQCRQRASLKYHMTKHKAETELDFACDQCGRRFEKAHNLNVHMSMVHPL
TQTQALPLEAEPPPGPLSLAGTVEGQAVKPEPT

hide sequence

Ensembl Acc Id:

ENSRNOP00000022324 ⟸ ENSRNOT00000022324

Protein Domains

C2H2-type ZAD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LN08-F1-model_v2	AlphaFold	F1LN08	1-609	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701228

Promoter ID:

EPDNEW_R11748

Type:

initiation region

Name:

Zfp276_1

Description:

zinc finger protein 276

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	56,054,253 - 56,054,313	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307469	AgrOrtholog
BioCyc Gene	G2FUF-5332	BioCyc
Ensembl Genes	ENSRNOG00000016631	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022324	ENTREZGENE
	ENSRNOT00000022324.8	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7113470	IMAGE-MGC_LOAD
InterPro	Znf_AD	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:307924	UniProtKB/TrEMBL
MGC_CLONE	MGC:94957	IMAGE-MGC_LOAD
NCBI Gene	307924	ENTREZGENE
PANTHER	C2H2-TYPE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	KRAB AND ZINC FINGER DOMAIN-CONTAINING	UniProtKB/TrEMBL
Pfam	zf-AD	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp276	PhenoGen
PROSITE	ZAD	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016631	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	F1LN08	ENTREZGENE, UniProtKB/TrEMBL
	Q6AXP9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Zfp276	zinc finger protein (C2H2 type) 276	Zfp276_predicted	zinc finger protein (C2H2 type) 276 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp276_predicted	zinc finger protein (C2H2 type) 276 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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