Banp (Btg3 associated nuclear protein) - Rat Genome Database

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Gene: Banp (Btg3 associated nuclear protein) Rattus norvegicus
Analyze
Symbol: Banp
Name: Btg3 associated nuclear protein
RGD ID: 1307464
Description: Predicted to enable identical protein binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human BANP (BTG3 associated nuclear protein); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292064
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,916,417 - 66,994,286 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1966,916,267 - 66,991,317 (+)EnsemblGRCr8
mRatBN7.21950,007,710 - 50,082,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,007,881 - 50,082,738 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1956,800,151 - 56,875,047 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,482,809 - 57,557,430 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01959,698,744 - 59,773,640 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01954,766,441 - 54,843,795 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)Ensemblrn6Rnor6.0
Rnor_5.01965,485,716 - 65,562,982 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41952,193,660 - 52,268,521 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1949,252,953 - 49,326,380 (+)NCBICelera
RGSC_v3.11952,198,537 - 52,273,415 (+)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
Ependymomas  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,3,5-trinitro-1,3,5-triazinane  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
acrylamide  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azoxystrobin  (EXP)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
chlorpyrifos  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
diazinon  (ISO)
dibenzo[a,l]pyrene  (ISO)
dimethylarsinic acid  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
fonofos  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
ketamine  (EXP)
lead(0)  (ISO)
methamphetamine  (ISO)
methylarsonic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP)
parathion  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
terbufos  (ISO)
tetraphene  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10940556   PMID:12477932   PMID:22978699   PMID:26871637   PMID:38168028  


Genomics

Comparative Map Data
Banp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,916,417 - 66,994,286 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1966,916,267 - 66,991,317 (+)EnsemblGRCr8
mRatBN7.21950,007,710 - 50,082,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,007,881 - 50,082,738 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1956,800,151 - 56,875,047 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,482,809 - 57,557,430 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01959,698,744 - 59,773,640 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01954,766,441 - 54,843,795 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)Ensemblrn6Rnor6.0
Rnor_5.01965,485,716 - 65,562,982 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41952,193,660 - 52,268,521 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1949,252,953 - 49,326,380 (+)NCBICelera
RGSC_v3.11952,198,537 - 52,273,415 (+)NCBI
Cytogenetic Map19q12NCBI
BANP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,949,238 - 88,077,318 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1687,949,127 - 88,077,321 (+)Ensemblhg38GRCh38
GRCh371687,982,844 - 88,110,924 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361686,542,539 - 86,668,425 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1672,282,252 - 72,401,419 (+)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,724,801 - 73,847,588 (+)NCBIHuRef
CHM1_11689,396,680 - 89,522,461 (+)NCBICHM1_1
T2T-CHM13v2.01694,021,837 - 94,148,506 (+)NCBIT2T-CHM13v2.0
Banp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,674,711 - 122,755,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,676,489 - 122,755,997 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388121,947,972 - 122,029,260 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,949,750 - 122,029,258 (+)Ensemblmm10GRCm38
MGSCv378124,474,433 - 124,553,158 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368124,836,670 - 124,912,027 (+)NCBIMGSCv36mm8
Celera8126,178,193 - 126,256,492 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.82NCBI
Banp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,169,303 - 2,256,779 (+)Ensembl
ChiLan1.0NW_0049555412,169,303 - 2,256,779 (+)NCBIChiLan1.0ChiLan1.0
BANP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,715,573 - 97,841,070 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,630,288 - 103,757,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,626,638 - 68,753,293 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11688,349,434 - 88,448,489 (+)NCBIPanPan1.1PanPan1.1panPan2
BANP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,151,863 - 65,256,782 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,152,247 - 65,256,667 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha565,162,111 - 65,267,012 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0565,371,550 - 65,476,482 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,371,548 - 65,476,442 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,397,260 - 65,502,077 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,228,933 - 65,333,795 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,635,910 - 65,740,823 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Banp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,633,182 - 25,719,262 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366411,387,102 - 1,472,803 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366411,386,592 - 1,472,750 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BANP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,421,462 - 1,495,486 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.161,421,460 - 1,495,484 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,560,880 - 1,595,741 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BANP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1573,341,241 - 73,466,636 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl573,341,729 - 73,466,949 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660472,238,241 - 2,366,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Banp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247461,203,275 - 1,286,241 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247461,205,212 - 1,287,108 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Banp
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11741,594,161 - 41,667,071 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:39
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000025894
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat

Markers in Region
BF399372  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,082,003 - 50,082,217 (+)MAPPERmRatBN7.2
Rnor_6.01954,840,093 - 54,840,306NCBIRnor6.0
Rnor_5.01965,559,281 - 65,559,494UniSTSRnor5.0
RGSC_v3.41952,268,028 - 52,268,241UniSTSRGSC3.4
Celera1949,325,887 - 49,326,100UniSTS
RH 3.4 Map19698.1UniSTS
Cytogenetic Map19q12UniSTS
RH135281  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,055,329 - 50,055,536 (+)MAPPERmRatBN7.2
Rnor_6.01954,814,060 - 54,814,266NCBIRnor6.0
Rnor_5.01965,533,306 - 65,533,512UniSTSRnor5.0
RGSC_v3.41952,241,134 - 52,241,340UniSTSRGSC3.4
Celera1949,300,393 - 49,300,599UniSTS
RH 3.4 Map19697.4UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC160844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000025894   ⟹   ENSRNOP00000025894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1966,916,413 - 66,991,057 (+)Ensembl
mRatBN7.2 Ensembl1950,007,881 - 50,082,737 (+)Ensembl
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106329   ⟹   ENSRNOP00000085557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1966,916,267 - 66,991,057 (+)Ensembl
mRatBN7.2 Ensembl1950,007,884 - 50,082,735 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106448   ⟹   ENSRNOP00000088499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1966,916,461 - 66,991,317 (+)Ensembl
mRatBN7.2 Ensembl1950,007,892 - 50,082,738 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108349   ⟹   ENSRNOP00000092851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,007,892 - 50,082,738 (+)Ensembl
RefSeq Acc Id: NM_001106191   ⟹   NP_001099661
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,461 - 66,991,317 (+)NCBI
mRatBN7.21950,007,881 - 50,082,742 (+)NCBI
Rnor_6.01954,766,595 - 54,840,586 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
RGSC_v3.41952,193,660 - 52,268,521 (+)RGD
Celera1949,252,953 - 49,326,380 (+)RGD
Sequence:
RefSeq Acc Id: NM_001419509   ⟹   NP_001406438
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,461 - 66,991,317 (+)NCBI
mRatBN7.21950,007,881 - 50,082,742 (+)NCBI
RefSeq Acc Id: XM_006255752   ⟹   XP_006255814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,417 - 66,994,286 (+)NCBI
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,589 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255753   ⟹   XP_006255815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,417 - 66,994,286 (+)NCBI
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,609 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255754   ⟹   XP_006255816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,417 - 66,994,286 (+)NCBI
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,609 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255756   ⟹   XP_006255818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,417 - 66,994,286 (+)NCBI
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,589 - 54,843,795 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255757   ⟹   XP_006255819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,417 - 66,994,286 (+)NCBI
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,609 - 54,843,795 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772601   ⟹   XP_008770823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,836 - 66,994,286 (+)NCBI
mRatBN7.21950,007,989 - 50,082,742 (+)NCBI
Rnor_6.01954,766,701 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097647   ⟹   XP_038953575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,982 - 66,994,286 (+)NCBI
mRatBN7.21950,008,402 - 50,082,742 (+)NCBI
RefSeq Acc Id: XM_039097650   ⟹   XP_038953578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,937,940 - 66,994,286 (+)NCBI
mRatBN7.21950,027,870 - 50,082,742 (+)NCBI
RefSeq Acc Id: XM_063277946   ⟹   XP_063134016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,836 - 66,994,286 (+)NCBI
RefSeq Acc Id: XM_063277947   ⟹   XP_063134017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,836 - 66,994,286 (+)NCBI
RefSeq Acc Id: XM_063277948   ⟹   XP_063134018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,916,417 - 66,994,286 (+)NCBI
RefSeq Acc Id: NP_001099661   ⟸   NM_001106191
- UniProtKB: B1H235 (UniProtKB/TrEMBL),   A6IZQ7 (UniProtKB/TrEMBL),   A0A8I6A879 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255814   ⟸   XM_006255752
- Peptide Label: isoform X2
- UniProtKB: F7F0I6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255818   ⟸   XM_006255756
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006255815   ⟸   XM_006255753
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A1X0 (UniProtKB/TrEMBL),   A6IZQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255816   ⟸   XM_006255754
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006255819   ⟸   XM_006255757
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008770823   ⟸   XM_008772601
- Peptide Label: isoform X1
- UniProtKB: B1H235 (UniProtKB/TrEMBL),   A6IZQ7 (UniProtKB/TrEMBL),   A0A8I6A879 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025894   ⟸   ENSRNOT00000025894
RefSeq Acc Id: XP_038953575   ⟸   XM_039097647
- Peptide Label: isoform X1
- UniProtKB: B1H235 (UniProtKB/TrEMBL),   A6IZQ7 (UniProtKB/TrEMBL),   A0A8I6A879 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953578   ⟸   XM_039097650
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000092851   ⟸   ENSRNOT00000108349
Ensembl Acc Id: ENSRNOP00000088499   ⟸   ENSRNOT00000106448
Ensembl Acc Id: ENSRNOP00000085557   ⟸   ENSRNOT00000106329
RefSeq Acc Id: NP_001406438   ⟸   NM_001419509
- UniProtKB: B1H235 (UniProtKB/TrEMBL),   A6IZQ7 (UniProtKB/TrEMBL),   A0A8I6A879 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134018   ⟸   XM_063277948
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AGC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134016   ⟸   XM_063277946
- Peptide Label: isoform X2
- UniProtKB: F7F0I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134017   ⟸   XM_063277947
- Peptide Label: isoform X4
Protein Domains
BEN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H235-F1-model_v2 AlphaFold B1H235 1-548 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701203
Promoter ID:EPDNEW_R11725
Type:initiation region
Name:Banp_1
Description:Btg3 associated nuclear protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,612 - 54,766,672EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307464 AgrOrtholog
BioCyc Gene G2FUF-5408 BioCyc
Ensembl Genes ENSRNOG00000019140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025894 ENTREZGENE
  ENSRNOT00000025894.7 UniProtKB/TrEMBL
  ENSRNOT00000106329 ENTREZGENE
  ENSRNOT00000106329.2 UniProtKB/TrEMBL
  ENSRNOT00000106448 ENTREZGENE
  ENSRNOT00000106448.2 UniProtKB/TrEMBL
Gene3D-CATH BEN domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8361869 IMAGE-MGC_LOAD
InterPro BANP UniProtKB/TrEMBL
  BEN_domain UniProtKB/TrEMBL
KEGG Report rno:292064 UniProtKB/TrEMBL
MGC_CLONE MGC:187571 IMAGE-MGC_LOAD
NCBI Gene 292064 ENTREZGENE
PANTHER PROTEIN BANP UniProtKB/TrEMBL
  PTHR16243 UniProtKB/TrEMBL
Pfam BEN UniProtKB/TrEMBL
PhenoGen Banp PhenoGen
PROSITE BEN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019140 RatGTEx
SMART BEN UniProtKB/TrEMBL
UniProt A0A8I6A1X0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A879 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGC7 ENTREZGENE
  A6IZQ7 ENTREZGENE, UniProtKB/TrEMBL
  A6IZQ8 ENTREZGENE, UniProtKB/TrEMBL
  B1H235 ENTREZGENE
  F7F0I6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B1H235 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Banp  Btg3 associated nuclear protein   Banp_predicted  Btg3 associated nuclear protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Banp_predicted  Btg3 associated nuclear protein (predicted)      Symbol and Name status set to approved 70820 APPROVED