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Gene: Cep162 (centrosomal protein 162) Rattus norvegicus

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Symbol:

Cep162

Name:

centrosomal protein 162

RGD ID:

1307365

Description:

Predicted to be involved in cilium assembly. Predicted to be located in centrosome. Predicted to be active in microtubule cytoskeleton and nucleoplasm. Orthologous to human CEP162 (centrosomal protein 162); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

centrosomal protein of 162 kDa; KIAA1009; LOC300880; MGC116374; protein QN1 homolog; Qn1; RGD1307365; similar to KIAA1009 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CEP162 (centrosomal protein 162)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cep162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cep162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CEP162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CEP162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cep162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CEP162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CEP162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cep162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cep162 (centrosomal protein 162)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	POP4 (POP4 ribonuclease P/MRP subunit)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CEP162 (centrosomal protein 162)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cep162 (centrosomal protein 162)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cep162 (centrosomal protein 162)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG42699	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG42699	Alliance	DIOPT (OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	cep162	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100497718	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC116410971	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	97,029,677 - 97,088,243 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	97,029,677 - 97,088,207 (-)	Ensembl				GRCr8
mRatBN7.2	8	88,149,726 - 88,208,249 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	88,149,726 - 88,206,830 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	93,821,473 - 93,878,705 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	92,020,686 - 92,077,916 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	89,854,312 - 89,911,509 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	94,863,282 - 94,921,917 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	94,863,282 - 94,922,017 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	94,370,711 - 94,429,335 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	92,448,321 - 92,505,677 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	87,735,259 - 87,791,983 (-)	NCBI		Celera
RGSC_v3.1	8	92,469,004 - 92,525,132 (-)	NCBI
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin M1 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP)

chlorpyrifos (ISO)

chrysene (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diclofenac (ISO)

gallic acid (ISO)

gentamycin (EXP)

iron dichloride (ISO)

lead diacetate (EXP)

methylmercury chloride (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

progesterone (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell projection organization (IEA)

cilium assembly (IBA,IEA,ISO,ISS)

Cellular Component

axonemal microtubule (IBA,IEA,ISO,ISS)

centriolar satellite (IBA)

centriole (IBA,IEA,ISO,ISS)

centrosome (IEA,ISO)

microtubule (IEA)

nucleoplasm (IBA,IEA,ISO)

nucleus (IEA)

spindle (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21399614	PMID:23644468	PMID:25002582

Genomics

Comparative Map Data

Cep162
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	97,029,677 - 97,088,243 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	97,029,677 - 97,088,207 (-)	Ensembl				GRCr8
mRatBN7.2	8	88,149,726 - 88,208,249 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	88,149,726 - 88,206,830 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	93,821,473 - 93,878,705 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	92,020,686 - 92,077,916 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	89,854,312 - 89,911,509 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	94,863,282 - 94,921,917 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	94,863,282 - 94,922,017 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	94,370,711 - 94,429,335 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	92,448,321 - 92,505,677 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	87,735,259 - 87,791,983 (-)	NCBI		Celera
RGSC_v3.1	8	92,469,004 - 92,525,132 (-)	NCBI
Cytogenetic Map	8	q31	NCBI

CEP162
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	84,124,250 - 84,227,643 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	84,124,241 - 84,227,685 (-)	Ensembl			hg38	GRCh38
GRCh37	6	84,833,969 - 84,937,361 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	84,890,679 - 84,994,054 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	84,890,690 - 84,994,033	NCBI
Celera	6	85,267,314 - 85,370,685 (-)	NCBI		Celera
Cytogenetic Map	6	q14.2-q14.3	NCBI
HuRef	6	82,063,622 - 82,166,852 (-)	NCBI		HuRef
CHM1_1	6	84,931,504 - 85,034,839 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	85,347,546 - 85,450,937 (-)	NCBI		T2T-CHM13v2.0

Cep162
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	87,071,626 - 87,137,589 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	87,071,630 - 87,137,589 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	87,189,573 - 87,255,536 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	87,189,577 - 87,255,536 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	87,086,798 - 87,150,367 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	86,989,909 - 87,053,482 (-)	NCBI		MGSCv36	mm8
MGSCv36	9	88,138,579 - 88,199,659 (-)	NCBI		MGSCv36	mm8
Celera	9	84,269,637 - 84,334,762 (-)	NCBI		Celera
Cytogenetic Map	9	E3.1	NCBI
cM Map	9	46.78	NCBI

Cep162
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	11,658,499 - 11,727,284 (-)	Ensembl
ChiLan1.0	NW_004955411	11,661,767 - 11,727,210 (-)	NCBI	ChiLan1.0	ChiLan1.0

CEP162
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	104,224,042 - 104,327,884 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	102,115,181 - 102,222,309 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	82,020,149 - 82,123,096 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	85,293,510 - 85,396,533 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	85,293,510 - 85,396,533 (-)	Ensembl			panPan2	panpan1.1

CEP162
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	44,387,216 - 44,483,809 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	44,387,330 - 44,483,060 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	44,200,434 - 44,298,093 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	45,155,380 - 45,253,097 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	45,155,391 - 45,252,860 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	44,494,165 - 44,585,191 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	44,429,227 - 44,520,348 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	44,604,491 - 44,702,190 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cep162
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	79,596,303 - 79,677,186 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	6,793,791 - 6,874,618 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	6,793,695 - 6,874,600 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CEP162
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	53,332,436 - 53,442,399 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	53,332,428 - 53,442,464 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	59,662,855 - 59,772,248 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CEP162
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	8,798,591 - 8,908,782 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	8,797,774 - 8,881,010 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	184,998,362 - 185,107,075 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cep162
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624799	10,359,323 - 10,441,151 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624799	10,359,786 - 10,441,067 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cep162
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	81,208,240 - 81,268,440 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cep162
494 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	502
Count of miRNA genes:	239
Interacting mature miRNAs:	305
Transcripts:	ENSRNOT00000014165
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	62848139	107848139	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	58337123	103337123	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	62848139	107848139	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	62970527	107970527	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	62848139	107848139	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	62848139	107848139	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	62848139	107848139	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	62848139	107848139	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	62848139	107848139	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	63404444	108404444	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	62963099	107963099	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	62982864	107982864	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	90	59	6	354	190	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001277060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014165 ⟹ ENSRNOP00000014165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	97,029,677 - 97,088,058 (-)	Ensembl
mRatBN7.2 Ensembl	8	88,149,726 - 88,206,830 (-)	Ensembl
Rnor_6.0 Ensembl	8	94,863,282 - 94,920,441 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083934 ⟹ ENSRNOP00000075055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	97,029,677 - 97,088,207 (-)	Ensembl
mRatBN7.2 Ensembl	8	88,149,726 - 88,206,830 (-)	Ensembl
Rnor_6.0 Ensembl	8	94,864,313 - 94,922,017 (-)	Ensembl

RefSeq Acc Id:

NM_001277060 ⟹ NP_001263989

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	97,029,677 - 97,086,720 (-)	NCBI
mRatBN7.2	8	88,149,726 - 88,206,770 (-)	NCBI
Rnor_6.0	8	94,863,282 - 94,920,441 (-)	NCBI
Rnor_5.0	8	94,370,711 - 94,429,335 (-)	NCBI
Celera	8	87,735,259 - 87,791,983 (-)	NCBI

Sequence:

show sequence

ATGGCCCACTATTCCAAAGTAGACCTTGATGAAGAATTTGAACGGTTTATGAAGGAGCTTTCAG
ATGATTCTTTTGAAAATTCAAATGAAACACCTAGCCAGCCTAACAAAGACAGAAAGAAGAAAGA
CACGGCCCCTTGGTGGATAGCTGAAGATGGTTTTGAAGATGATGGACTGCTTGGGACAAATGTG
AGCTATTTGAAGACAAAGAAGACCTATCAACCTATTACGGACATGGAAGAGGAAAATGAAAAAG
TCCAGTTTCTTAAGAGCAGTGGAACCTCCGTCTTAAGTGTTGACAGCTTAGAAGCTAATGAATT
GGTTGCTTCTGAGCTCCATCATAGCACTCTAGGTTTGGGCCTGGACACATTAGAAGAACAAGAG
GAGAAAGAGCAGTTCTTTGCCAGGCTTGAGAAAGGCTTGACATCTTCTATTGATTATTCAAAAT
TAAATCAAGAACTGGATTCTGACGACTCTGCACAATTCAGAGTTTTACATAGATATCAAGGTAA
TGTAGAACCAGCTGAAGGTGGACGTGAGAATGAATCAGAACACAAGGAACTGCCAGAAACATAC
AGTGATGATTTTGAAGATGCTGAGGATACTGATGAACCTTTGATTACTAAAGATGAAGAGACCC
GTCCCAAAGAAAACCCTGAGTCAGGAAAAGGCAGCTTTCCCAACCAGGAGGAAGAGAAAACTGG
CATGCTGGCTAATGTGGTGCTGCTTGATTCTTTTGACTCTGTCGAGGATGTTGACCTTAACAAT
CATGAGAGACCAACCCCTAAGGCAAAGGCCCTCCCAGAAATGGCAGGCGGTGAACTAGCAGAAA
CAGGTGTTTCTTATGGACAAAGCAGTGGTGACACAGAAGCCCTGCACCAGGCTTACCATCACGT
AGCTCATTCTCTGGGAGATACAGGCGAACCAAGAATTGAGGCTAGCCCTGGGCACAGTGTCAGG
AGCTCCGCAAAAGATGGTCTTCAAGAAAATGAGGAGTCTTCAAAGAACATCTCTACCACCGAGT
CTGATCTTCCCACAGTAGAGGAGCTGATGAAGCCTATCAGGATAGATTCCTATGGGATCAGGGG
TTTTGACTTGCAGCCTGTCAGCCTTCAGAAAGCAGTGGGCAGTAAAGAAGCAGAGTCTGTGAGC
TCTTTACCCCTGACAGTGAACACAAACACCATGTCTCAAGACACTAGGCACGTGAGCCCATTTC
CCCACGAGCAGGATGAGAGTGTGGTTCTACACAGGACAGCGGGGGAGGGTGTGGGCAGCAGCTG
CCCAGCCACAGAAGAGCATTTGGACAAAATGTACCTGGAGATTCTGAGGAAGAAAACATCTGTT
AATCCTTCACTGTTACCTCAGGACAACAAAGCTAACCAGACTTCCAGGTCCCGGCTCAGTGCTA
GGGAAGAGGCGCCTGTCACTAGTAAACAGGTTCCATGTAAGAAGGCCAGAAGTGCACCTCCTTT
GCCTAGGAGAAAGCCACAGAGTGGGCTGTATGCATCAGCTCGGAGCTCAGGCTACAGCAAACCC
AGTTCACCACTCCAGTTCTTTTCAGCTCTTGAAAAGAAAACGTCCAAGGATAATACAAAAACTA
AAAATGTGAGACCCATTCCCACCTCAAATCAATTTAGAAAAAGAGAAATACTATCTGGAACAAA
GCTCATCAAGCCTGCAGCTTTGAACAAACCATCCCCTCACCGTGAAGGCAGCCCAGCTACACCT
AAGAGGCCTGAAGACCCCTCAGATGATTCCTTTGTTCAGCTACAGACTGAGACTTTGGGATCCT
ATGGTGGGAACAGAGAAAAAGAATTACTAATGTTGAAAAGAGCTCAGGACGCTGAGGAAAAATG
GAGGGGCGCCCAAGCGCTAATCGAGCAAATTAAAATGACGTTCTCTGAGAAGGAGAAGGAGTTG
GAGAACACAGTGGAAAGCCTAAAGAGGCAGCAGGAGAGAGAGCTCTTCAAACTGAACCAAGAAA
ATTACATTCTTCAAGCCAAGTTAAGTAGCTTTGAAGAAACAAGCAGAAAACAGAGGTGGCTACA
ATTTGGAGAAACATCTGATCCTCTCACTGAAGAGAAACTGAAACAAATTCAAAAAGAGATACAA
GAACAAGAGACACTTCTTCAAGGCTACCAACAGGAAAATGAAAGGTTATATAGTCAAGTAAAAG
ATCTTCAGGAACAAAATAAGAAAAATGAAGAGCGGATGTTTAAAGAAAATCAAAATTTATTTAG
TGAGTTGGCCTCTTTAAAAGAACAGATGCACAAAAATCATTTTCTGCCTCAAGCAGTTGAAAAT
ATAGAACCTACCAAAAACCAGAGTTTTACAGATCTTCTAGCAGAATTACGGGCAGCACAGAAAG
AAAAAAACCATCTGATGGAAGACATCAAAAGACTGAAGCAAGACAAACAAGCTCTTGAAGTGGA
CTTGGAAAGAGTGAAGAGGGAGAGGGACCAAGCCAAAGATCAAATCGCCTATACCACAGGTGAA
AAATTATATGAAATAAAGATTTTAGAAGAAACACATAAGCAGGAAGTCAGTCGTCTACAAAAGC
GGTTACAGTGGTACGCTGAAAATCAGGAGCTTCTGGATAAAGACGCAGCCCGACTCAGAGAGGC
CAATGAAGAAACTGAGAGGCTGAAACTAGAGATTGAGAAACTGAAAACTGAGTCTGGGAGCCCA
GCAAATCAGCAGAGGCTACGCTCAAAGGAGAGAGCTCTTGATGCCAAAAGAATTCAGGACCTGG
AGCGGCAGGTTAAAGAAATGGAAGGGATTCTGAAGAGAAGGTATCCCAACTCTTTACCCGCTTT
GATACTGGCTGCCTCGGCAGCTGGTGATTCAGTAGATAGAAATACGGTGGACTTTATGGAGAGA
AGGATAAAAAAGCTAGAAGCTGATCTAGAGGGCAAAGATGAAGAAGCCAAGAAAAGCCTTCGCA
CCATGGAACAGCAGTTTCAGAAAATGAAGATTCAGTATGAACAGCGGCTGGAAGAGCAGGAGCA
GATGCTTGCCCACAGGCAGAGGGAAGCTCCACAGAACCAGCATAACAGCTCATCCAGGCTCAAG
GCACTCGAGACAGAACTTGGGGGCATAAAGGAAGCCCACCAGATCACTGTAAGAAAGCTGGAGG
CTGAGATAGATGTTCTTAAACATCAGAATGCTCACTTAGAGCACAAGAAGAATGACAAGGAAGA
TCAGGACCTCCAGTCCATAGAGTTCCAGGTAGAGCAGGCGCAGGCTAGGGCAAAGCTGGCCAGA
CTCAATGAAGAACTGGCGGCGAAAGGGAGAGAGATACAAGACCTTACAAAAACTGTGGAGAGGC
TCCAGAAGGAGAGAAGGATGATGCTGTCTAGGCAGAGTCCCAGAGGCAGAGAAGAGATGGCTGC
CAAAAGGCTGAAGAAAGAAATTTTGCATCCAAATAGTGGAAATGCAAATGCCTTCTCTGAAACA
TTGGGTGCCAAACTGTATCACCCACACACCTTCACTGACTCTCACATTTCGGAGGTCTTAGAAG
AAAACTACAGATTGAGAAGTGAGCTGGAGGGGTTGACTTTAGAGAGAGAGAAGCTGAAGATGGA
ATCTGAAGCTGCCGTGTGCCAACTGGAAAGCTCCATGAAAAGGGTCAAGGACGATGCAGCAGCA
CACATTGCATCCCTCAAAGCAGCTCATGAGAGGGAAATAGAGAAACTCCTTTGCCAAAATGCAG
TAGAAAATTCCTCTTCCAGAGTAGCTGAACTGAATCGCAAAATCGCAACTCAAGAGGTTCTTCT
AAAACATTTCCAAGGTCAAGTTAATGAGCTGCAGGGCAAACAGGAATCCCTTTCACTTTCTCAA
GTTCGAGAAGAAATCCTACAGAAACAGATTACAAAACTCTTGGAAGAATTGAAAGAAGCCAAAG
AAAACCACACACCAGAGATGAAACATTTCATGGGCTTAGAAAGGAAGATCAAGCAGATGGAGAT
GAGGCATAAGCAGAGAGAGCAGGAGCTCCAGCAGATAATACAGCAAACACGCCAAGTAGTAGAA
ACTGAGCAAAACAAAGAAGTTGAGAAATGGAAAAGACTTGCACAGTTAAAGAATCGGGAGCTGG
ACAAGTTCCGAACAGAGTTAGACTCCATACTCGACGTTCTTCGGGAGCTGCACAGACAGGGGGT
CGTTGTCCCGGTTGCTCTTGCAGATGAAGAGAGCACAGCAAAAGAGTTTTAGTGGAACTTGGAT
CTGCGTGACCGAGTTGGAAGACAGGTGGAAACGTGCCGCTGTCAGGACAGCCACCACACAGCCA
TGCGTGACCACCCCACAGTACCATGTCAGAATAAACTGCCATGAACCAACAAGGAAGAACATAC
ATCTTGATTATCTTACTGAAAACCATTAAACATTTGAGATGACCTTCGAGCAGGCTCCGTAATG
TCAGAAGGCTGTGACTAGCAAGGTTTATGTGAAAGGGCGCCCTCCCAGGCTACAGTGGAAGAAG
GGAGCGCACCTCCTCAGCCATGTTTCATAGATTAAATGCCTTTCCATTTTCTGTCTGACAGAAA
GTCAGCTTTCTCATGAAACAGGTAGGTGAATGAGAGCCTCGTGCTGGGGACAGTCTTATCGCTG
GCTATAGAGTGTCCTCAGGAACTTAGGTGACAGTTGAGGGCCTTCTGCACCTGATACAAAGTGA
CAAGAAATGGTACAGTTTATGTGTCTCTTACTGGAGGTCAGGTCTAGTAAATGACAATCCAAAT
TTTTGGCAGCTCTAAAGTTATAAACAATATATGAAGTTTTTCCTTTTCTGTTAAAAAAGAAATA
TTATGTCCAATGGAAAAAATTAAAATGTGCCTAAAATAGCTAGTTTATTTTATAATCCCATTTG
TACAAGTAGATCAGAAATGTATATGATTTCTGTAAATGAAAGCTGCTAGCAGTTTTTCAGGTGT
CCCTCTGGAGATCGAGCTGTCCATGGAGACATGTGTGGCGTCTGCACTGGGTGCTTCTGGTGAT
CTGTGTGGGAGAAAGAGGCAGGTAATCTGAAGACACCTGAGCTCCAGACAGAATGACAAGAAGT
ATGCACAGTGAATTTTAATTTTTAGTCAGTTTAAAATGGAAAGTGAAACTGTGAACTAAGTCTT
TAGAGTATATTTTACATTATAGCACATCTCGATTTAGACTTCATTCCAACTGCCCATACCAGTA
AATGCAGGCCTGAAATGAAATGCAGTAAATGCTTGCAAAGTAGAATGTTTCATAAGGGATGGGT
GAACAAATCTTAGTGAACTCATGACCAAAGGTTGTGATGTAAACCTCCTGTTTAGTAGAAGCAG
TGTAATTGTCCTAATGCCAACATTTTATCATTTGTTTTCTTTCTGAGAGGGGAGTGAAAAAGCA
TTATCACTTTCAATTTTTTCATGTACGGCATTTCAAAGTTATAATACAGATAATTTATTTTATC
A

hide sequence

RefSeq Acc Id:

XM_006243475 ⟹ XP_006243537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	97,029,677 - 97,088,243 (-)	NCBI
mRatBN7.2	8	88,149,726 - 88,208,245 (-)	NCBI
Rnor_6.0	8	94,863,284 - 94,921,917 (-)	NCBI
Rnor_5.0	8	94,370,711 - 94,429,335 (-)	NCBI

Sequence:

show sequence

GCAGGCTGAGTTCAGAATTTCAGGGAGTGAAGAGAAGGCAGGATGTGCACACTGCTGAGGCGCC
CACATCCCTTAAGGCCACCACACCCTGCAGAGCCGTGATGGTTCCAATCTTTATTTGAAAGACA
CCGGAAGACCGGCAGCTTGTCTGGATGCTCCGTGGGTCACATGGCAAGGGGATCACGTGATAAC
CCGGAGCCCGCCCGTGGAGGTATGTTGCCTTGACAACAGCTGGCTGCCCCAGACTTTCCGGGAG
AGCGCGGGATCCCAGGAGCAGGGTTTCCAATGCTGTAAATAATTTTAGGATACTTTCTTTGTGA
CGTGAAAATTATTAGTTATGGCCCACTATTCCAAAGTAGACCTTGATGAAGAATTTGAACGGTT
TATGAAGGAGCTTTCAGATGATTCTTTTGAAAATTCAAATGAAACACCTAGCCAGCCTAACAAA
GACAGAAAGAAGAAAGACACGGCCCCTTGGTGGATAGCTGAAGATGGTTTTGAAGATGATGGAC
TGCTTGGGACAAATGTGAGCTATTTGAAGACAAAGAAGACCTATCAACCTATTACGGACATGGA
AGAGGAAAATGAAAAAGTCCAGTTTCTTAAGAGCAGTGGAACCTCCGTCTTAAGTGTTGACAGC
TTAGAAGCTAATGAATTGGTTGCTTCTGAGCTCCATCATAGCACTCTAGGTTTGGGCCTGGACA
CATTAGAAGAACAAGAGGAGAAAGAGCAGTTCTTTGCCAGGCTTGAGAAAGGCTTGACATCTTC
TATTGATTATTCAAAATTAAATCAAGAACTGGATTCTGACGACTCTGCACAATTCAGAGTTTTA
CATAGATATCAAGGTAATGTAGAACCAGCTGAAGGTGGACGTGAGAATGAATCAGAACACAAGG
AACTGCCAGAAACATACAGTGATGATTTTGAAGATGCTGAGGATACTGATGAACCTTTGATTAC
TAAAGATGAAGAGACCCGTCCCAAAGAAAACCCTGAGTCAGGAAAAGGCAGCTTTCCCAACCAG
GAGGAAGAGAAAACTGGCATGCTGGCTAATGTGGTGCTGCTTGATTCTTTTGACTCTGTCGAGG
ATGTTGACCTTAACAATCATGAGAGACCAACCCCTAAGGCAAAGGCCCTCCCAGAAATGGCAGG
CGGTGAACTAGCAGAAACAGGTGTTTCTTATGGACAAAGCAGTGGTGACACAGAAGCCCTGCAC
CAGGCTTACCATCACGTAGCTCATTCTCTGGGAGATACAGGCGAACCAAGAATTGAGGCTAGCC
CTGGGCACAGTGTCAGGAGCTCCGCAAAAGATGGTCTTCAAGAAAATGAGGAGTCTTCAAAGAA
CATCTCTACCACCGAGTCTGATCTTCCCACAGTAGAGGAGCTGATGAAGCCTATCAGGATAGAT
TCCTATGGGATCAGGGGTTTTGACTTGCAGCCTGTCAGCCTTCAGAAAGCAGTGGGCAGTAAAG
AAGCAGAGTCTGTGAGCTCTTTACCCCTGACAGTGAACACAAACACCATGTCTCAAGACACTAG
GCACGTGAGCCCATTTCCCCACGAGCAGGATGAGAGTGTGGTTCTACACAGGACAGCGGGGGAG
GGTGTGGGCAGCAGCTGCCCAGCCACAGAAGAGCATTTGGACAAAATGTACCTGGAGATTCTGA
GGAAGAAAACATCTGTTAATCCTTCACTGTTACCTCAGGACAACAAAGCTAACCAGACTTCCAG
GTCCCGGCTCAGTGCTAGGGAAGAGGCGCCTGTCACTAGTAAACAGGTTCCATGTAAGAAGGCC
AGAAGTGCACCTCCTTTGCCTAGGAGAAAGCCACAGAGTGGGCTGTATGCATCAGCTCGGAGCT
CAGGCTACAGCAAACCCAGTTCACCACTCCAGTTCTTTTCAGCTCTTGAAAAGAAAACGTCCAA
GGATAATACAAAAACTAAAAATGTGAGACCCATTCCCACCTCAAATCAATTTAGAAAAAGAGAA
ATACTATCTGGAACAAAGCTCATCAAGCCTGCAGCTTTGAACAAACCATCCCCTCACCGTGAAG
GCAGCCCAGCTACACCTAAGAGGCCTGAAGACCCCTCAGATGATTCCTTTGTTCAGCTACAGAC
TGAGACTTTGGGATCCTATGGTGGGAACAGAGAAAAAGAATTACTAATGTTGAAAAGAGCTCAG
GACGCTGAGGAAAAATGGAGGGGCGCCCAAGCGCTAATCGAGCAAATTAAAATGACGTTCTCTG
AGAAGGAGAAGGAGTTGGAGAACACAGTGGAAAGCCTAAAGAGGCAGCAGGAGAGAGAGCTCTT
CAAACTGAACCAAGAAAATTACATTCTTCAAGCCAAGTTAAGTAGCTTTGAAGAAACAAGCAGA
AAACAGAGGTGGCTACAATTTGGAGAAACATCTGATCCTCTCACTGAAGAGAAACTGAAACAAA
TTCAAAAAGAGATACAAGAACAAGAGACACTTCTTCAAGGCTACCAACAGGAAAATGAAAGGTT
ATATAGTCAAGTAAAAGATCTTCAGGAACAAAATAAGAAAAATGAAGAGCGGATGTTTAAAGAA
AATCAAAATTTATTTAGTGAGTTGGCCTCTTTAAAAGAACAGATGCACAAAAATCATTTTCTGC
CTCAAGCAGTTGAAAATATAGAACCTACCAAAAACCAGAGTTTTACAGATCTTCTAGCAGAATT
ACGGGCAGCACAGAAAGAAAAAAACCATCTGATGGAAGACATCAAAAGACTGAAGCAAGACAAA
CAAGCTCTTGAAGTGGACTTGGAAAGAGTGAAGAGGGAGAGGGACCAAGCCAAAGATCAAATCG
CCTATACCACAGGTGAAAAATTATATGAAATAAAGATTTTAGAAGAAACACATAAGCAGGAAGT
CAGTCGTCTACAAAAGCGGTTACAGTGGTACGCTGAAAATCAGGAGCTTCTGGATAAAGACGCA
GCCCGACTCAGAGAGGCCAATGAAGAAACTGAGAGGCTGAAACTAGAGATTGAGAAACTGAAAA
CTGAGTCTGGGAGCCCAGCAAATCAGCAGAGGCTACGCTCAAAGGAGAGAGCTCTTGATGCCAA
AAGAATTCAGGACCTGGAGCGGCAGGTTAAAGAAATGGAAGGGATTCTGAAGAGAAGGTATCCC
AACTCTTTACCCGCTTTGATACTGGCTGCCTCGGCAGCTGGTGATTCAGTAGATAGAAATACGG
TGGACTTTATGGAGAGAAGGATAAAAAAGCTAGAAGCTGATCTAGAGGGCAAAGATGAAGAAGC
CAAGAAAAGCCTTCGCACCATGGAACAGCAGTTTCAGAAAATGAAGATTCAGTATGAACAGCGG
CTGGAAGAGCAGGAGCAGATGCTTGCCCACAGGCAGAGGGAAGCTCCACAGAACCAGCATAACA
GCTCATCCAGGCTCAAGGCACTCGAGACAGAACTTGGGGGCATAAAGGAAGCCCACCAGATCAC
TGTAAGAAAGCTGGAGGCTGAGATAGATGTTCTTAAACATCAGAATGCTCACTTAGAGCACAAG
AAGAATGACAAGGAAGATCAGGACCTCCAGTCCATAGAGTTCCAGGTAGAGCAGGCGCAGGCTA
GGGCAAAGCTGGCCAGACTCAATGAAGAACTGGCGGCGAAAGGGAGAGAGATACAAGACCTTAC
AAAAACTGTGGAGAGGCTCCAGAAGGAGAGAAGGATGATGCTGTCTAGGCAGAGTCCCAGAGGC
AGAGAAGAGATGGCTGCCAAAAGGCTGAAGAAAGAAATTTTGCATCCAAATAGTGGAAATGCAA
ATGCCTTCTCTGAAACATTGGGTGCCAAACTGTATCACCCACACACCTTCACTGACTCTCACAT
TTCGGAGGTCTTAGAAGAAAACTACAGATTGAGAAGTGAGCTGGAGGGGTTGACTTTAGAGAGA
GAGAAGCTGAAGATGGAATCTGAAGCTGCCGTGTGCCAACTGGAAAGCTCCATGAAAAGGGTCA
AGGACGATGCAGCAGCACACATTGCATCCCTCAAAGCAGCTCATGAGAGGGAAATAGAGAAACT
CCTTTGCCAAAATGCAGTAGAAAATTCCTCTTCCAGAGTAGCTGAACTGAATCGCAAAATCGCA
ACTCAAGAGGTTCTTCTAAAACATTTCCAAGGTCAAGTTAATGAGCTGCAGGGCAAACAGGAAT
CCCTTTCACTTTCTCAAGTTCGAGAAGAAATCCTACAGAAACAGATTACAAAACTCTTGGAAGA
ATTGAAAGAAGCCAAAGAAAACCACACACCAGAGATGAAACATTTCATGGGCTTAGAAAGGAAG
ATCAAGCAGATGGAGATGAGGCATAAGCAGAGAGAGCAGGAGCTCCAGCAGATAATACAGCAAA
CACGCCAAGTAGTAGAAACTGAGCAAAACAAAGAAGTTGAGAAATGGAAAAGACTTGCACAGTT
AAAGAATCGGGAGCTGGACAAGTTCCGAACAGAGTTAGACTCCATACTCGACGTTCTTCGGGAG
CTGCACAGACAGGGGGTCGTTGTCCCGGTTGCTCTTGCAGATGAAGAGAGCACAGCAAAAGAGT
TTTAGTGGAACTTGGATCTGCGTGACCGAGTTGGAAGACAGGTGGAAACGTGCCGCTGTCAGGA
CAGCCACCACACAGCCATGCGTGACCACCCCACAGTACCATGTCAGAATAAACTGCCATGAACC
AACAAGGAAGAACATACATCTTGATTATCTTACTGAAAACCATTAAACATTTGAGATGACCTTC
GAGCAGGCTCCGTAATGTCAGAAGGCTGTGACTAGCAAGGTTTATGTGAAAGGGCGCCCTCCCA
GGCTACAGTGGAAGAAGGGAGCGCACCTCCTCAGCCATGTTTCATAGATTAAATGCCTTTCCAT
TTTCTGTCTGACAGAAAGTCAGCTTTCTCATGAAACAGGTAGGTGAATGAGAGCCTCGTGCTGG
GGACAGTCTTATCGCTGGCTATAGAGTGTCCTCAGGAACTTAGGTGACAGTTGAGGGCCTTCTG
CACCTGATACAAAGTGACAAGAAATGGTACAGTTTATGTGTCTCTTACTGGAGGTCAGGTCTAG
TAAATGACAATCCAAATTTTTGGCAGCTCTAAAGTTATAAACAATATATGAAGTTTTTCCTTTT
CTGTTAAAAAAGAAATATTATGTCCAATGGAAAAAATTAAAATGTGCCTAAAATAGCTAGTTTA
TTTTATAATCCCATTTGTACAAGTAGATCAGAAATGTATATGATTTCTGTAAATGAAAGCTGCT
AGCAGTTTTTCAGGTGTCCCTCTGGAGATCGAGCTGTCCATGGAGACATGTGTGGCGTCTGCAC
TGGGTGCTTCTGGTGATCTGTGTGGGAGAAAGAGGCAGGTAATCTGAAGACACCTGAGCTCCAG
ACAGAATGACAAGAAGTATGCACAGTGAATTTTAATTTTTAGTCAGTTTAAAATGGAAAGTGAA
ACTGTGAACTAAGTCTTTAGAGTATATTTTACATTATAGCACATCTCGATTTAGACTTCATTCC
AACTGCCCATACCAGTAAATGCAGGCCTGAAATGAAATGCAGTAAATGCTTGCAAAGTAGAATG
TTTCATAAGGGATGGGTGAACAAATCTTAGTGAACTCATGACCAAAGGTTGTGATGTAAACCTC
CTGTTTAGTAGAAGCAGTGTAATTGTCCTAATGCCAACATTTTATCATTTGTTTTCTTTCTGAG
AGGGGAGTGAAAAAGCATTATCACTTTCAATTTTTTCATGTACGGCATTTCAAAGTTATAATAC
AGATAATTTATTTTAT

hide sequence

RefSeq Acc Id:

XM_006243476 ⟹ XP_006243538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	97,029,677 - 97,088,191 (-)	NCBI
mRatBN7.2	8	88,149,726 - 88,208,245 (-)	NCBI
Rnor_6.0	8	94,863,284 - 94,921,917 (-)	NCBI
Rnor_5.0	8	94,370,711 - 94,429,335 (-)	NCBI

Sequence:

show sequence

GCAGGCTGAGTTCAGAATTTCAGGGAGTGAAGAGAAGGCAGGATGTGCACACTGCTGAGGCGCC
CACATCCCTTAAGGCCACCACACCCTGCAGAGCCGTGATGGTTCCAATCTTTATTTGAAAGACA
CCGGAAGACCGGCAGCTTGTCTGGATGCTCCGTGGGTCACATGGCAAGGGGATCACGTGATAAC
CCGGAGCCCGCCCGTGGAGGTATGTTGCCTTGACAACAGCTGGCTGCCCCAGACTTTCCGGGAG
AGCGCGGGATCCCAGGAGCAGGGTTTCCAATGCTGTAAATAATTTTAGGATACTTTCTTTGTGA
CGTGAAAATTATTAGTTATGGCCCACTATTCCAAAGTAGACCTTGATGAAGAATTTGAACGGTT
TATGAAGGAGCTTTCAGATGATTCTTTTGAAAATTCAAATGAAACACCTAGCCAGCCTAACAAA
GACAGAAAGAAGAAAGACACGGCCCCTTGGTGGATAGCTGAAGATGGTTTTGAAGATGATGGAC
TGCTTGGGACAAATGTGAGCTATTTGAAGACAAAGAAGACCTATCAACCTATTACGGACATGGA
AGAGGAAAATGAAAAAGTCCAGTTTCTTAAGAGCAGTGGAACCTCCGTCTTAAGTGTTGACAGC
TTAGAAGCTAATGAATTGGTTGCTTCTGAGCTCCATCATAGCACTCTAGGTTTGGGCCTGGACA
CATTAGAAGAACAAGAGGAGAAAGAGCAGTTCTTTGCCAGGCTTGAGAAAGGCTTGACATCTTC
TATTGATTATTCAAAATTAAATCAAGAACTGGATTCTGACGACTCTGCACAATTCAGAGTTTTA
CATAGATATCAAGGTAATGTAGAACCAGCTGAAGGTGGACGTGAGAATGAATCAGAACACAAGG
AACTGCCAGAAACATACAGTGATGATTTTGAAGATGCTGAGGATACTGATGAACCTTTGATTAC
TAAAGATGAAGAGACCCGTCCCAAAGAAAACCCTGAGTCAGGAAAAGGCAGCTTTCCCAACCAG
GAGGAAGAGAAAACTGGCATGCTGGCTAATGTGGTGCTGCTTGATTCTTTTGACTCTGTCGAGG
ATGTTGACCTTAACAATCATGAGAGACCAACCCCTAAGGCAAAGGCCCTCCCAGAAATGGCAGG
CGGTGAACTAGCAGAAACAGATCTTCCCACAGTAGAGGAGCTGATGAAGCCTATCAGGATAGAT
TCCTATGGGATCAGGGGTTTTGACTTGCAGCCTGTCAGCCTTCAGAAAGCAGTGGGCAGTAAAG
AAGCAGAGTCTGTGAGCTCTTTACCCCTGACAGTGAACACAAACACCATGTCTCAAGACACTAG
GCACGTGAGCCCATTTCCCCACGAGCAGGATGAGAGTGTGGTTCTACACAGGACAGCGGGGGAG
GGTGTGGGCAGCAGCTGCCCAGCCACAGAAGAGCATTTGGACAAAATGTACCTGGAGATTCTGA
GGAAGAAAACATCTGTTAATCCTTCACTGTTACCTCAGGACAACAAAGCTAACCAGACTTCCAG
GTCCCGGCTCAGTGCTAGGGAAGAGGCGCCTGTCACTAGTAAACAGGTTCCATGTAAGAAGGCC
AGAAGTGCACCTCCTTTGCCTAGGAGAAAGCCACAGAGTGGGCTGTATGCATCAGCTCGGAGCT
CAGGCTACAGCAAACCCAGTTCACCACTCCAGTTCTTTTCAGCTCTTGAAAAGAAAACGTCCAA
GGATAATACAAAAACTAAAAATGTGAGACCCATTCCCACCTCAAATCAATTTAGAAAAAGAGAA
ATACTATCTGGAACAAAGCTCATCAAGCCTGCAGCTTTGAACAAACCATCCCCTCACCGTGAAG
GCAGCCCAGCTACACCTAAGAGGCCTGAAGACCCCTCAGATGATTCCTTTGTTCAGCTACAGAC
TGAGACTTTGGGATCCTATGGTGGGAACAGAGAAAAAGAATTACTAATGTTGAAAAGAGCTCAG
GACGCTGAGGAAAAATGGAGGGGCGCCCAAGCGCTAATCGAGCAAATTAAAATGACGTTCTCTG
AGAAGGAGAAGGAGTTGGAGAACACAGTGGAAAGCCTAAAGAGGCAGCAGGAGAGAGAGCTCTT
CAAACTGAACCAAGAAAATTACATTCTTCAAGCCAAGTTAAGTAGCTTTGAAGAAACAAGCAGA
AAACAGAGGTGGCTACAATTTGGAGAAACATCTGATCCTCTCACTGAAGAGAAACTGAAACAAA
TTCAAAAAGAGATACAAGAACAAGAGACACTTCTTCAAGGCTACCAACAGGAAAATGAAAGGTT
ATATAGTCAAGTAAAAGATCTTCAGGAACAAAATAAGAAAAATGAAGAGCGGATGTTTAAAGAA
AATCAAAATTTATTTAGTGAGTTGGCCTCTTTAAAAGAACAGATGCACAAAAATCATTTTCTGC
CTCAAGCAGTTGAAAATATAGAACCTACCAAAAACCAGAGTTTTACAGATCTTCTAGCAGAATT
ACGGGCAGCACAGAAAGAAAAAAACCATCTGATGGAAGACATCAAAAGACTGAAGCAAGACAAA
CAAGCTCTTGAAGTGGACTTGGAAAGAGTGAAGAGGGAGAGGGACCAAGCCAAAGATCAAATCG
CCTATACCACAGGTGAAAAATTATATGAAATAAAGATTTTAGAAGAAACACATAAGCAGGAAGT
CAGTCGTCTACAAAAGCGGTTACAGTGGTACGCTGAAAATCAGGAGCTTCTGGATAAAGACGCA
GCCCGACTCAGAGAGGCCAATGAAGAAACTGAGAGGCTGAAACTAGAGATTGAGAAACTGAAAA
CTGAGTCTGGGAGCCCAGCAAATCAGCAGAGGCTACGCTCAAAGGAGAGAGCTCTTGATGCCAA
AAGAATTCAGGACCTGGAGCGGCAGGTTAAAGAAATGGAAGGGATTCTGAAGAGAAGGTATCCC
AACTCTTTACCCGCTTTGATACTGGCTGCCTCGGCAGCTGGTGATTCAGTAGATAGAAATACGG
TGGACTTTATGGAGAGAAGGATAAAAAAGCTAGAAGCTGATCTAGAGGGCAAAGATGAAGAAGC
CAAGAAAAGCCTTCGCACCATGGAACAGCAGTTTCAGAAAATGAAGATTCAGTATGAACAGCGG
CTGGAAGAGCAGGAGCAGATGCTTGCCCACAGGCAGAGGGAAGCTCCACAGAACCAGCATAACA
GCTCATCCAGGCTCAAGGCACTCGAGACAGAACTTGGGGGCATAAAGGAAGCCCACCAGATCAC
TGTAAGAAAGCTGGAGGCTGAGATAGATGTTCTTAAACATCAGAATGCTCACTTAGAGCACAAG
AAGAATGACAAGGAAGATCAGGACCTCCAGTCCATAGAGTTCCAGGTAGAGCAGGCGCAGGCTA
GGGCAAAGCTGGCCAGACTCAATGAAGAACTGGCGGCGAAAGGGAGAGAGATACAAGACCTTAC
AAAAACTGTGGAGAGGCTCCAGAAGGAGAGAAGGATGATGCTGTCTAGGCAGAGTCCCAGAGGC
AGAGAAGAGATGGCTGCCAAAAGGCTGAAGAAAGAAATTTTGCATCCAAATAGTGGAAATGCAA
ATGCCTTCTCTGAAACATTGGGTGCCAAACTGTATCACCCACACACCTTCACTGACTCTCACAT
TTCGGAGGTCTTAGAAGAAAACTACAGATTGAGAAGTGAGCTGGAGGGGTTGACTTTAGAGAGA
GAGAAGCTGAAGATGGAATCTGAAGCTGCCGTGTGCCAACTGGAAAGCTCCATGAAAAGGGTCA
AGGACGATGCAGCAGCACACATTGCATCCCTCAAAGCAGCTCATGAGAGGGAAATAGAGAAACT
CCTTTGCCAAAATGCAGTAGAAAATTCCTCTTCCAGAGTAGCTGAACTGAATCGCAAAATCGCA
ACTCAAGAGGTTCTTCTAAAACATTTCCAAGGTCAAGTTAATGAGCTGCAGGGCAAACAGGAAT
CCCTTTCACTTTCTCAAGTTCGAGAAGAAATCCTACAGAAACAGATTACAAAACTCTTGGAAGA
ATTGAAAGAAGCCAAAGAAAACCACACACCAGAGATGAAACATTTCATGGGCTTAGAAAGGAAG
ATCAAGCAGATGGAGATGAGGCATAAGCAGAGAGAGCAGGAGCTCCAGCAGATAATACAGCAAA
CACGCCAAGTAGTAGAAACTGAGCAAAACAAAGAAGTTGAGAAATGGAAAAGACTTGCACAGTT
AAAGAATCGGGAGCTGGACAAGTTCCGAACAGAGTTAGACTCCATACTCGACGTTCTTCGGGAG
CTGCACAGACAGGGGGTCGTTGTCCCGGTTGCTCTTGCAGATGAAGAGAGCACAGCAAAAGAGT
TTTAGTGGAACTTGGATCTGCGTGACCGAGTTGGAAGACAGGTGGAAACGTGCCGCTGTCAGGA
CAGCCACCACACAGCCATGCGTGACCACCCCACAGTACCATGTCAGAATAAACTGCCATGAACC
AACAAGGAAGAACATACATCTTGATTATCTTACTGAAAACCATTAAACATTTGAGATGACCTTC
GAGCAGGCTCCGTAATGTCAGAAGGCTGTGACTAGCAAGGTTTATGTGAAAGGGCGCCCTCCCA
GGCTACAGTGGAAGAAGGGAGCGCACCTCCTCAGCCATGTTTCATAGATTAAATGCCTTTCCAT
TTTCTGTCTGACAGAAAGTCAGCTTTCTCATGAAACAGGTAGGTGAATGAGAGCCTCGTGCTGG
GGACAGTCTTATCGCTGGCTATAGAGTGTCCTCAGGAACTTAGGTGACAGTTGAGGGCCTTCTG
CACCTGATACAAAGTGACAAGAAATGGTACAGTTTATGTGTCTCTTACTGGAGGTCAGGTCTAG
TAAATGACAATCCAAATTTTTGGCAGCTCTAAAGTTATAAACAATATATGAAGTTTTTCCTTTT
CTGTTAAAAAAGAAATATTATGTCCAATGGAAAAAATTAAAATGTGCCTAAAATAGCTAGTTTA
TTTTATAATCCCATTTGTACAAGTAGATCAGAAATGTATATGATTTCTGTAAATGAAAGCTGCT
AGCAGTTTTTCAGGTGTCCCTCTGGAGATCGAGCTGTCCATGGAGACATGTGTGGCGTCTGCAC
TGGGTGCTTCTGGTGATCTGTGTGGGAGAAAGAGGCAGGTAATCTGAAGACACCTGAGCTCCAG
ACAGAATGACAAGAAGTATGCACAGTGAATTTTAATTTTTAGTCAGTTTAAAATGGAAAGTGAA
ACTGTGAACTAAGTCTTTAGAGTATATTTTACATTATAGCACATCTCGATTTAGACTTCATTCC
AACTGCCCATACCAGTAAATGCAGGCCTGAAATGAAATGCAGTAAATGCTTGCAAAGTAGAATG
TTTCATAAGGGATGGGTGAACAAATCTTAGTGAACTCATGACCAAAGGTTGTGATGTAAACCTC
CTGTTTAGTAGAAGCAGTGTAATTGTCCTAATGCCAACATTTTATCATTTGTTTTCTTTCTGAG
AGGGGAGTGAAAAAGCATTATCACTTTCAATTTTTTCATGTACGGCATTTCAAAGTTATAATAC
AGATAATTTATTTTAT

hide sequence

RefSeq Acc Id:

XM_008766441 ⟹ XP_008764663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	97,029,677 - 97,078,895 (-)	NCBI
mRatBN7.2	8	88,149,726 - 88,198,940 (-)	NCBI
Rnor_6.0	8	94,863,284 - 94,912,711 (-)	NCBI

Sequence:

show sequence

GAAAGGCTTGACATCTTCTATTGATTATTCAAAATTAAATCAAGAACTGGATTCTGACGACTCT
GCACAATTCAGAGTTTTACATAGATATCAAGGTAATGTAGAACCAGCTGAAGGTGGACGTGAGA
ATGAATCAGAACACAAGGAACTGCCAGGAGGAAGAGAAAACTGGCATGCTGGCTAATGTGGTGC
TGCTTGATTCTTTTGACTCTGTCGAGGATGTTGACCTTAACAATCATGAGAGACCAACCCCTAA
GGCAAAGGCCCTCCCAGAAATGGCAGGCGGTGAACTAGCAGAAACAGGTGTTTCTTATGGACAA
AGCAGTGGTGACACAGAAGCCCTGCACCAGGCTTACCATCACGTAGCTCATTCTCTGGGAGATA
CAGGCGAACCAAGAATTGAGGCTAGCCCTGGGCACAGTGTCAGGAGCTCCGCAAAAGATGGTCT
TCAAGAAAATGAGGAGTCTTCAAAGAACATCTCTACCACCGAGTCTGATCTTCCCACAGTAGAG
GAGCTGATGAAGCCTATCAGGATAGATTCCTATGGGATCAGGGGTTTTGACTTGCAGCCTGTCA
GCCTTCAGAAAGCAGTGGGCAGTAAAGAAGCAGAGTCTGTGAGCTCTTTACCCCTGACAGTGAA
CACAAACACCATGTCTCAAGACACTAGGCACGTGAGCCCATTTCCCCACGAGCAGGATGAGAGT
GTGGTTCTACACAGGACAGCGGGGGAGGGTGTGGGCAGCAGCTGCCCAGCCACAGAAGAGCATT
TGGACAAAATGTACCTGGAGATTCTGAGGAAGAAAACATCTGTTAATCCTTCACTGTTACCTCA
GGACAACAAAGCTAACCAGACTTCCAGGTCCCGGCTCAGTGCTAGGGAAGAGGCGCCTGTCACT
AGTAAACAGGTTCCATGTAAGAAGGCCAGAAGTGCACCTCCTTTGCCTAGGAGAAAGCCACAGA
GTGGGCTGTATGCATCAGCTCGGAGCTCAGGCTACAGCAAACCCAGTTCACCACTCCAGTTCTT
TTCAGCTCTTGAAAAGAAAACGTCCAAGGATAATACAAAAACTAAAAATGTGAGACCCATTCCC
ACCTCAAATCAATTTAGAAAAAGAGAAATACTATCTGGAACAAAGCTCATCAAGCCTGCAGCTT
TGAACAAACCATCCCCTCACCGTGAAGGCAGCCCAGCTACACCTAAGAGGCCTGAAGACCCCTC
AGATGATTCCTTTGTTCAGCTACAGACTGAGACTTTGGGATCCTATGGTGGGAACAGAGAAAAA
GAATTACTAATGTTGAAAAGAGCTCAGGACGCTGAGGAAAAATGGAGGGGCGCCCAAGCGCTAA
TCGAGCAAATTAAAATGACGTTCTCTGAGAAGGAGAAGGAGTTGGAGAACACAGTGGAAAGCCT
AAAGAGGCAGCAGGAGAGAGAGCTCTTCAAACTGAACCAAGAAAATTACATTCTTCAAGCCAAG
TTAAGTAGCTTTGAAGAAACAAGCAGAAAACAGAGGTGGCTACAATTTGGAGAAACATCTGATC
CTCTCACTGAAGAGAAACTGAAACAAATTCAAAAAGAGATACAAGAACAAGAGACACTTCTTCA
AGGCTACCAACAGGAAAATGAAAGGTTATATAGTCAAGTAAAAGATCTTCAGGAACAAAATAAG
AAAAATGAAGAGCGGATGTTTAAAGAAAATCAAAATTTATTTAGTGAGTTGGCCTCTTTAAAAG
AACAGATGCACAAAAATCATTTTCTGCCTCAAGCAGTTGAAAATATAGAACCTACCAAAAACCA
GAGTTTTACAGATCTTCTAGCAGAATTACGGGCAGCACAGAAAGAAAAAAACCATCTGATGGAA
GACATCAAAAGACTGAAGCAAGACAAACAAGCTCTTGAAGTGGACTTGGAAAGAGTGAAGAGGG
AGAGGGACCAAGCCAAAGATCAAATCGCCTATACCACAGGTGAAAAATTATATGAAATAAAGAT
TTTAGAAGAAACACATAAGCAGGAAGTCAGTCGTCTACAAAAGCGGTTACAGTGGTACGCTGAA
AATCAGGAGCTTCTGGATAAAGACGCAGCCCGACTCAGAGAGGCCAATGAAGAAACTGAGAGGC
TGAAACTAGAGATTGAGAAACTGAAAACTGAGTCTGGGAGCCCAGCAAATCAGCAGAGGCTACG
CTCAAAGGAGAGAGCTCTTGATGCCAAAAGAATTCAGGACCTGGAGCGGCAGGTTAAAGAAATG
GAAGGGATTCTGAAGAGAAGGTATCCCAACTCTTTACCCGCTTTGATACTGGCTGCCTCGGCAG
CTGGTGATTCAGTAGATAGAAATACGGTGGACTTTATGGAGAGAAGGATAAAAAAGCTAGAAGC
TGATCTAGAGGGCAAAGATGAAGAAGCCAAGAAAAGCCTTCGCACCATGGAACAGCAGTTTCAG
AAAATGAAGATTCAGTATGAACAGCGGCTGGAAGAGCAGGAGCAGATGCTTGCCCACAGGCAGA
GGGAAGCTCCACAGAACCAGCATAACAGCTCATCCAGGCTCAAGGCACTCGAGACAGAACTTGG
GGGCATAAAGGAAGCCCACCAGATCACTGTAAGAAAGCTGGAGGCTGAGATAGATGTTCTTAAA
CATCAGAATGCTCACTTAGAGCACAAGAAGAATGACAAGGAAGATCAGGACCTCCAGTCCATAG
AGTTCCAGGTAGAGCAGGCGCAGGCTAGGGCAAAGCTGGCCAGACTCAATGAAGAACTGGCGGC
GAAAGGGAGAGAGATACAAGACCTTACAAAAACTGTGGAGAGGCTCCAGAAGGAGAGAAGGATG
ATGCTGTCTAGGCAGAGTCCCAGAGGCAGAGAAGAGATGGCTGCCAAAAGGCTGAAGAAAGAAA
TTTTGCATCCAAATAGTGGAAATGCAAATGCCTTCTCTGAAACATTGGGTGCCAAACTGTATCA
CCCACACACCTTCACTGACTCTCACATTTCGGAGGTCTTAGAAGAAAACTACAGATTGAGAAGT
GAGCTGGAGGGGTTGACTTTAGAGAGAGAGAAGCTGAAGATGGAATCTGAAGCTGCCGTGTGCC
AACTGGAAAGCTCCATGAAAAGGGTCAAGGACGATGCAGCAGCACACATTGCATCCCTCAAAGC
AGCTCATGAGAGGGAAATAGAGAAACTCCTTTGCCAAAATGCAGTAGAAAATTCCTCTTCCAGA
GTAGCTGAACTGAATCGCAAAATCGCAACTCAAGAGGTTCTTCTAAAACATTTCCAAGGTCAAG
TTAATGAGCTGCAGGGCAAACAGGAATCCCTTTCACTTTCTCAAGTTCGAGAAGAAATCCTACA
GAAACAGATTACAAAACTCTTGGAAGAATTGAAAGAAGCCAAAGAAAACCACACACCAGAGATG
AAACATTTCATGGGCTTAGAAAGGAAGATCAAGCAGATGGAGATGAGGCATAAGCAGAGAGAGC
AGGAGCTCCAGCAGATAATACAGCAAACACGCCAAGTAGTAGAAACTGAGCAAAACAAAGAAGT
TGAGAAATGGAAAAGACTTGCACAGTTAAAGAATCGGGAGCTGGACAAGTTCCGAACAGAGTTA
GACTCCATACTCGACGTTCTTCGGGAGCTGCACAGACAGGGGGTCGTTGTCCCGGTTGCTCTTG
CAGATGAAGAGAGCACAGCAAAAGAGTTTTAGTGGAACTTGGATCTGCGTGACCGAGTTGGAAG
ACAGGTGGAAACGTGCCGCTGTCAGGACAGCCACCACACAGCCATGCGTGACCACCCCACAGTA
CCATGTCAGAATAAACTGCCATGAACCAACAAGGAAGAACATACATCTTGATTATCTTACTGAA
AACCATTAAACATTTGAGATGACCTTCGAGCAGGCTCCGTAATGTCAGAAGGCTGTGACTAGCA
AGGTTTATGTGAAAGGGCGCCCTCCCAGGCTACAGTGGAAGAAGGGAGCGCACCTCCTCAGCCA
TGTTTCATAGATTAAATGCCTTTCCATTTTCTGTCTGACAGAAAGTCAGCTTTCTCATGAAACA
GGTAGGTGAATGAGAGCCTCGTGCTGGGGACAGTCTTATCGCTGGCTATAGAGTGTCCTCAGGA
ACTTAGGTGACAGTTGAGGGCCTTCTGCACCTGATACAAAGTGACAAGAAATGGTACAGTTTAT
GTGTCTCTTACTGGAGGTCAGGTCTAGTAAATGACAATCCAAATTTTTGGCAGCTCTAAAGTTA
TAAACAATATATGAAGTTTTTCCTTTTCTGTTAAAAAAGAAATATTATGTCCAATGGAAAAAAT
TAAAATGTGCCTAAAATAGCTAGTTTATTTTATAATCCCATTTGTACAAGTAGATCAGAAATGT
ATATGATTTCTGTAAATGAAAGCTGCTAGCAGTTTTTCAGGTGTCCCTCTGGAGATCGAGCTGT
CCATGGAGACATGTGTGGCGTCTGCACTGGGTGCTTCTGGTGATCTGTGTGGGAGAAAGAGGCA
GGTAATCTGAAGACACCTGAGCTCCAGACAGAATGACAAGAAGTATGCACAGTGAATTTTAATT
TTTAGTCAGTTTAAAATGGAAAGTGAAACTGTGAACTAAGTCTTTAGAGTATATTTTACATTAT
AGCACATCTCGATTTAGACTTCATTCCAACTGCCCATACCAGTAAATGCAGGCCTGAAATGAAA
TGCAGTAAATGCTTGCAAAGTAGAATGTTTCATAAGGGATGGGTGAACAAATCTTAGTGAACTC
ATGACCAAAGGTTGTGATGTAAACCTCCTGTTTAGTAGAAGCAGTGTAATTGTCCTAATGCCAA
CATTTTATCATTTGTTTTCTTTCTGAGAGGGGAGTGAAAAAGCATTATCACTTTCAATTTTTTC
ATGTACGGCATTTCAAAGTTATAATACAGATAATTTATTTTAT

hide sequence

RefSeq Acc Id:

XM_063265193 ⟹ XP_063121263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	97,043,259 - 97,088,243 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001263989	(Get FASTA)	NCBI Sequence Viewer
	XP_006243537	(Get FASTA)	NCBI Sequence Viewer
	XP_006243538	(Get FASTA)	NCBI Sequence Viewer
	XP_008764663	(Get FASTA)	NCBI Sequence Viewer
	XP_063121263	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99201	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014165
	ENSRNOP00000014165.5
	ENSRNOP00000075055
GenBank Protein	Q4KLH6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001263989 ⟸ NM_001277060

- UniProtKB:

Q4KLH6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAHYSKVDLDEEFERFMKELSDDSFENSNETPSQPNKDRKKKDTAPWWIAEDGFEDDGLLGTNV
SYLKTKKTYQPITDMEEENEKVQFLKSSGTSVLSVDSLEANELVASELHHSTLGLGLDTLEEQE
EKEQFFARLEKGLTSSIDYSKLNQELDSDDSAQFRVLHRYQGNVEPAEGGRENESEHKELPETY
SDDFEDAEDTDEPLITKDEETRPKENPESGKGSFPNQEEEKTGMLANVVLLDSFDSVEDVDLNN
HERPTPKAKALPEMAGGELAETGVSYGQSSGDTEALHQAYHHVAHSLGDTGEPRIEASPGHSVR
SSAKDGLQENEESSKNISTTESDLPTVEELMKPIRIDSYGIRGFDLQPVSLQKAVGSKEAESVS
SLPLTVNTNTMSQDTRHVSPFPHEQDESVVLHRTAGEGVGSSCPATEEHLDKMYLEILRKKTSV
NPSLLPQDNKANQTSRSRLSAREEAPVTSKQVPCKKARSAPPLPRRKPQSGLYASARSSGYSKP
SSPLQFFSALEKKTSKDNTKTKNVRPIPTSNQFRKREILSGTKLIKPAALNKPSPHREGSPATP
KRPEDPSDDSFVQLQTETLGSYGGNREKELLMLKRAQDAEEKWRGAQALIEQIKMTFSEKEKEL
ENTVESLKRQQERELFKLNQENYILQAKLSSFEETSRKQRWLQFGETSDPLTEEKLKQIQKEIQ
EQETLLQGYQQENERLYSQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLPQAVEN
IEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLERVKRERDQAKDQIAYTTGE
KLYEIKILEETHKQEVSRLQKRLQWYAENQELLDKDAARLREANEETERLKLEIEKLKTESGSP
ANQQRLRSKERALDAKRIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDSVDRNTVDFMER
RIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQMLAHRQREAPQNQHNSSSRLK
ALETELGGIKEAHQITVRKLEAEIDVLKHQNAHLEHKKNDKEDQDLQSIEFQVEQAQARAKLAR
LNEELAAKGREIQDLTKTVERLQKERRMMLSRQSPRGREEMAAKRLKKEILHPNSGNANAFSET
LGAKLYHPHTFTDSHISEVLEENYRLRSELEGLTLEREKLKMESEAAVCQLESSMKRVKDDAAA
HIASLKAAHEREIEKLLCQNAVENSSSRVAELNRKIATQEVLLKHFQGQVNELQGKQESLSLSQ
VREEILQKQITKLLEELKEAKENHTPEMKHFMGLERKIKQMEMRHKQREQELQQIIQQTRQVVE
TEQNKEVEKWKRLAQLKNRELDKFRTELDSILDVLRELHRQGVVVPVALADEESTAKEF

hide sequence

RefSeq Acc Id:	XP_006243538 ⟸ XM_006243476
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2R9X6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAHYSKVDLDEEFERFMKELSDDSFENSNETPSQPNKDRKKKDTAPWWIAEDGFEDDGLLGTNV SYLKTKKTYQPITDMEEENEKVQFLKSSGTSVLSVDSLEANELVASELHHSTLGLGLDTLEEQE EKEQFFARLEKGLTSSIDYSKLNQELDSDDSAQFRVLHRYQGNVEPAEGGRENESEHKELPETY SDDFEDAEDTDEPLITKDEETRPKENPESGKGSFPNQEEEKTGMLANVVLLDSFDSVEDVDLNN HERPTPKAKALPEMAGGELAETDLPTVEELMKPIRIDSYGIRGFDLQPVSLQKAVGSKEAESVS SLPLTVNTNTMSQDTRHVSPFPHEQDESVVLHRTAGEGVGSSCPATEEHLDKMYLEILRKKTSV NPSLLPQDNKANQTSRSRLSAREEAPVTSKQVPCKKARSAPPLPRRKPQSGLYASARSSGYSKP SSPLQFFSALEKKTSKDNTKTKNVRPIPTSNQFRKREILSGTKLIKPAALNKPSPHREGSPATP KRPEDPSDDSFVQLQTETLGSYGGNREKELLMLKRAQDAEEKWRGAQALIEQIKMTFSEKEKEL ENTVESLKRQQERELFKLNQENYILQAKLSSFEETSRKQRWLQFGETSDPLTEEKLKQIQKEIQ EQETLLQGYQQENERLYSQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLPQAVEN IEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLERVKRERDQAKDQIAYTTGE KLYEIKILEETHKQEVSRLQKRLQWYAENQELLDKDAARLREANEETERLKLEIEKLKTESGSP ANQQRLRSKERALDAKRIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDSVDRNTVDFMER RIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQMLAHRQREAPQNQHNSSSRLK ALETELGGIKEAHQITVRKLEAEIDVLKHQNAHLEHKKNDKEDQDLQSIEFQVEQAQARAKLAR LNEELAAKGREIQDLTKTVERLQKERRMMLSRQSPRGREEMAAKRLKKEILHPNSGNANAFSET LGAKLYHPHTFTDSHISEVLEENYRLRSELEGLTLEREKLKMESEAAVCQLESSMKRVKDDAAA HIASLKAAHEREIEKLLCQNAVENSSSRVAELNRKIATQEVLLKHFQGQVNELQGKQESLSLSQ VREEILQKQITKLLEELKEAKENHTPEMKHFMGLERKIKQMEMRHKQREQELQQIIQQTRQVVE TEQNKEVEKWKRLAQLKNRELDKFRTELDSILDVLRELHRQGVVVPVALADEESTAKEF hide sequence

RefSeq Acc Id:	XP_006243537 ⟸ XM_006243475
- Peptide Label:	isoform X1
- UniProtKB:	Q4KLH6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAHYSKVDLDEEFERFMKELSDDSFENSNETPSQPNKDRKKKDTAPWWIAEDGFEDDGLLGTNV SYLKTKKTYQPITDMEEENEKVQFLKSSGTSVLSVDSLEANELVASELHHSTLGLGLDTLEEQE EKEQFFARLEKGLTSSIDYSKLNQELDSDDSAQFRVLHRYQGNVEPAEGGRENESEHKELPETY SDDFEDAEDTDEPLITKDEETRPKENPESGKGSFPNQEEEKTGMLANVVLLDSFDSVEDVDLNN HERPTPKAKALPEMAGGELAETGVSYGQSSGDTEALHQAYHHVAHSLGDTGEPRIEASPGHSVR SSAKDGLQENEESSKNISTTESDLPTVEELMKPIRIDSYGIRGFDLQPVSLQKAVGSKEAESVS SLPLTVNTNTMSQDTRHVSPFPHEQDESVVLHRTAGEGVGSSCPATEEHLDKMYLEILRKKTSV NPSLLPQDNKANQTSRSRLSAREEAPVTSKQVPCKKARSAPPLPRRKPQSGLYASARSSGYSKP SSPLQFFSALEKKTSKDNTKTKNVRPIPTSNQFRKREILSGTKLIKPAALNKPSPHREGSPATP KRPEDPSDDSFVQLQTETLGSYGGNREKELLMLKRAQDAEEKWRGAQALIEQIKMTFSEKEKEL ENTVESLKRQQERELFKLNQENYILQAKLSSFEETSRKQRWLQFGETSDPLTEEKLKQIQKEIQ EQETLLQGYQQENERLYSQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLPQAVEN IEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLERVKRERDQAKDQIAYTTGE KLYEIKILEETHKQEVSRLQKRLQWYAENQELLDKDAARLREANEETERLKLEIEKLKTESGSP ANQQRLRSKERALDAKRIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDSVDRNTVDFMER RIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQMLAHRQREAPQNQHNSSSRLK ALETELGGIKEAHQITVRKLEAEIDVLKHQNAHLEHKKNDKEDQDLQSIEFQVEQAQARAKLAR LNEELAAKGREIQDLTKTVERLQKERRMMLSRQSPRGREEMAAKRLKKEILHPNSGNANAFSET LGAKLYHPHTFTDSHISEVLEENYRLRSELEGLTLEREKLKMESEAAVCQLESSMKRVKDDAAA HIASLKAAHEREIEKLLCQNAVENSSSRVAELNRKIATQEVLLKHFQGQVNELQGKQESLSLSQ VREEILQKQITKLLEELKEAKENHTPEMKHFMGLERKIKQMEMRHKQREQELQQIIQQTRQVVE TEQNKEVEKWKRLAQLKNRELDKFRTELDSILDVLRELHRQGVVVPVALADEESTAKEF hide sequence

RefSeq Acc Id:	XP_008764663 ⟸ XM_008766441
- Peptide Label:	isoform X3
- UniProtKB:	A6I1X4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNQNTRNCQEEEKTGMLANVVLLDSFDSVEDVDLNNHERPTPKAKALPEMAGGELAETGVSYGQ SSGDTEALHQAYHHVAHSLGDTGEPRIEASPGHSVRSSAKDGLQENEESSKNISTTESDLPTVE ELMKPIRIDSYGIRGFDLQPVSLQKAVGSKEAESVSSLPLTVNTNTMSQDTRHVSPFPHEQDES VVLHRTAGEGVGSSCPATEEHLDKMYLEILRKKTSVNPSLLPQDNKANQTSRSRLSAREEAPVT SKQVPCKKARSAPPLPRRKPQSGLYASARSSGYSKPSSPLQFFSALEKKTSKDNTKTKNVRPIP TSNQFRKREILSGTKLIKPAALNKPSPHREGSPATPKRPEDPSDDSFVQLQTETLGSYGGNREK ELLMLKRAQDAEEKWRGAQALIEQIKMTFSEKEKELENTVESLKRQQERELFKLNQENYILQAK LSSFEETSRKQRWLQFGETSDPLTEEKLKQIQKEIQEQETLLQGYQQENERLYSQVKDLQEQNK KNEERMFKENQNLFSELASLKEQMHKNHFLPQAVENIEPTKNQSFTDLLAELRAAQKEKNHLME DIKRLKQDKQALEVDLERVKRERDQAKDQIAYTTGEKLYEIKILEETHKQEVSRLQKRLQWYAE NQELLDKDAARLREANEETERLKLEIEKLKTESGSPANQQRLRSKERALDAKRIQDLERQVKEM EGILKRRYPNSLPALILAASAAGDSVDRNTVDFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQ KMKIQYEQRLEEQEQMLAHRQREAPQNQHNSSSRLKALETELGGIKEAHQITVRKLEAEIDVLK HQNAHLEHKKNDKEDQDLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRM MLSRQSPRGREEMAAKRLKKEILHPNSGNANAFSETLGAKLYHPHTFTDSHISEVLEENYRLRS ELEGLTLEREKLKMESEAAVCQLESSMKRVKDDAAAHIASLKAAHEREIEKLLCQNAVENSSSR VAELNRKIATQEVLLKHFQGQVNELQGKQESLSLSQVREEILQKQITKLLEELKEAKENHTPEM KHFMGLERKIKQMEMRHKQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKNRELDKFRTEL DSILDVLRELHRQGVVVPVALADEESTAKEF hide sequence

Ensembl Acc Id:

ENSRNOP00000014165 ⟸ ENSRNOT00000014165

Ensembl Acc Id:

ENSRNOP00000075055 ⟸ ENSRNOT00000083934

RefSeq Acc Id:	XP_063121263 ⟸ XM_063265193
- Peptide Label:	isoform X4

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KLH6-F1-model_v2	AlphaFold	Q4KLH6	1-1403	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307365	AgrOrtholog
BioCyc Gene	G2FUF-29630	BioCyc
Ensembl Genes	ENSRNOG00000010608	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000014165	ENTREZGENE
	ENSRNOT00000014165.7	UniProtKB/Swiss-Prot
	ENSRNOT00000083934	ENTREZGENE
InterPro	CEP162-like	UniProtKB/Swiss-Prot
KEGG Report	rno:300880	UniProtKB/Swiss-Prot
NCBI Gene	300880	ENTREZGENE
PANTHER	CENTROSOMAL PROTEIN OF 162 KDA	UniProtKB/Swiss-Prot
	PTHR34031	UniProtKB/Swiss-Prot
PhenoGen	Cep162	PhenoGen
RatGTEx	ENSRNOG00000010608	RatGTEx
UniProt	A0A8L2R9X6	ENTREZGENE, UniProtKB/TrEMBL
	A6I1X4	ENTREZGENE, UniProtKB/TrEMBL
	CE162_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-03-13	Cep162	centrosomal protein 162	RGD1307365	similar to KIAA1009 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1307365	similar to KIAA1009 protein	RGD1307365_predicted	similar to KIAA1009 protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307365_predicted	similar to KIAA1009 protein (predicted)	LOC300880_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC300880_predicted	similar to KIAA1009 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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