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Gene: Zc3h3 (zinc finger CCCH type containing 3) Rattus norvegicus

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Symbol:

Zc3h3

Name:

zinc finger CCCH type containing 3

RGD ID:

1307276

Description:

Predicted to enable R-SMAD binding activity. Predicted to act upstream of or within mRNA 3'-end processing and positive regulation of activin receptor signaling pathway. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Predicted to be active in nucleus. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3); INTERACTS WITH amitrole; bisphenol A; gentamycin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC300032; Zc3hdc3; zinc finger CCCH domain-containing protein 3; zinc finger CCCH type domain containing 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZC3H3 (zinc finger CCCH-type containing 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zc3h3 (zinc finger CCCH type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zc3h3 (zinc finger CCCH-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZC3H3 (zinc finger CCCH-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZC3H3 (zinc finger CCCH-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zc3h3 (zinc finger CCCH-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZC3H3 (zinc finger CCCH-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZC3H3 (zinc finger CCCH-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zc3h3 (zinc finger CCCH-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZC3H3 (zinc finger CCCH-type containing 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zc3h3 (zinc finger CCCH type containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zc3h3 (zinc finger CCCH-type containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ZC3H3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	zc3h3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zc3h3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	109,321,423 - 109,406,241 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	109,321,423 - 109,406,172 (-)	Ensembl				GRCr8
mRatBN7.2	7	107,440,694 - 107,525,451 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	107,440,694 - 107,525,451 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	109,179,939 - 109,264,663 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	111,403,612 - 111,488,339 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	111,349,520 - 111,434,264 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	116,787,762 - 116,872,536 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	116,787,766 - 116,872,511 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	116,679,040 - 116,765,271 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	113,714,123 - 113,813,124 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	103,802,384 - 103,885,283 (-)	NCBI		Celera
RGSC_v3.1	7	113,743,162 - 113,847,328 (-)	NCBI
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

lymphopenia (ISO)

neutropenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

fluoranthene (ISO)

fonofos (ISO)

FR900359 (ISO)

gefitinib (ISO)

gentamycin (EXP)

hydralazine (ISO)

indole-3-methanol (EXP)

lead diacetate (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

N-nitrosodiethylamine (EXP)

naphthalene (ISO)

okadaic acid (ISO)

parathion (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tamoxifen (ISO)

terbufos (ISO)

titanium dioxide (ISO)

triadimefon (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA 3'-end processing (ISO)

positive regulation of activin receptor signaling pathway (ISO)

Cellular Component

mRNA cleavage and polyadenylation specificity factor complex (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

R-SMAD binding (IEA,ISO)

SMAD binding (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16115198	PMID:19364924

Genomics

Comparative Map Data

Zc3h3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	109,321,423 - 109,406,241 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	109,321,423 - 109,406,172 (-)	Ensembl				GRCr8
mRatBN7.2	7	107,440,694 - 107,525,451 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	107,440,694 - 107,525,451 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	109,179,939 - 109,264,663 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	111,403,612 - 111,488,339 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	111,349,520 - 111,434,264 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	116,787,762 - 116,872,536 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	116,787,766 - 116,872,511 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	116,679,040 - 116,765,271 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	113,714,123 - 113,813,124 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	103,802,384 - 103,885,283 (-)	NCBI		Celera
RGSC_v3.1	7	113,743,162 - 113,847,328 (-)	NCBI
Cytogenetic Map	7	q34	NCBI

ZC3H3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	143,437,659 - 143,541,447 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	143,437,655 - 143,541,455 (-)	Ensembl			hg38	GRCh38
GRCh37	8	144,519,829 - 144,623,617 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	144,590,968 - 144,694,763 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	144,590,974 - 144,694,746	NCBI
Celera	8	140,831,713 - 140,933,556 (-)	NCBI		Celera
Cytogenetic Map	8	q24.3	NCBI
HuRef	8	139,772,578 - 139,874,905 (-)	NCBI		HuRef
CHM1_1	8	144,560,281 - 144,663,535 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	144,587,223 - 144,699,075 (-)	NCBI		T2T-CHM13v2.0

Zc3h3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	75,626,279 - 75,713,772 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	75,626,279 - 75,713,764 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	75,754,430 - 75,842,061 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	75,754,430 - 75,841,915 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	75,584,877 - 75,672,338 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	75,581,702 - 75,669,163 (-)	NCBI		MGSCv36	mm8
MGSCv36	15	76,251,464 - 76,338,765 (-)	NCBI		MGSCv36	mm8
Celera	15	77,255,238 - 77,342,629 (-)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI
cM Map	15	34.84	NCBI

Zc3h3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	2,142,062 - 2,239,518 (-)	Ensembl
ChiLan1.0	NW_004955454	2,145,605 - 2,239,643 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZC3H3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	160,918,461 - 161,036,705 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	136,435,580 - 136,541,985 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	140,188,041 - 140,294,113 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	143,203,325 - 143,309,829 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	143,203,325 - 143,310,210 (-)	Ensembl			panPan2	panpan1.1

ZC3H3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	37,128,915 - 37,214,643 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	37,130,999 - 37,214,997 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	37,086,105 - 37,173,402 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	37,601,143 - 37,688,716 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	37,601,129 - 37,688,672 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	37,275,547 - 37,363,068 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	37,392,711 - 37,480,013 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	37,873,663 - 37,961,174 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zc3h3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	1,165,453 - 1,249,414 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	8,591,540 - 8,675,519 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	8,591,564 - 8,675,505 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZC3H3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	1,010,638 - 1,089,738 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	1,009,927 - 1,084,133 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	1,182,154 - 1,233,200 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZC3H3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	137,656,299 - 137,762,448 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	137,656,302 - 137,762,403 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	2,131,282 - 2,247,050 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zc3h3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	13,230,642 - 13,319,666 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624735	13,230,576 - 13,320,068 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Zc3h3
400 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	269
Count of miRNA genes:	157
Interacting mature miRNAs:	173
Transcripts:	ENSRNOT00000010120
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	92388565	119280177	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	82111245	123048330	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	73618702	118618702	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	71621154	114982716	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
1331723	Bw25	Body weight QTL 25	3.348		body mass (VT:0001259)	body weight (CMO:0000012)	7	96700404	111672180	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	73557047	118557047	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	82111245	123048330	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	96700404	118618702	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
10450862	Kidm55	Kidney mass QTL 55	4.9		kidney mass (VT:0002707)	kidney weight (CMO:0000081)	7	72725037	117725037	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
10450856	Livw4	Liver weight QTL 4	3.8		liver mass (VT:0003402)	liver weight (CMO:0000092)	7	72725037	117725037	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	78682549	123682549	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH144447

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	107,437,459 - 107,437,581 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	116,784,528 - 116,784,649	NCBI	Rnor6.0
Rnor_5.0	7	116,675,806 - 116,675,927	UniSTS	Rnor5.0
RGSC_v3.4	7	113,710,889 - 113,711,010	UniSTS	RGSC3.4
Celera	7	103,799,150 - 103,799,271	UniSTS
RH 3.4 Map	7	776.3	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010120 ⟹ ENSRNOP00000010120

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	109,321,423 - 109,406,172 (-)	Ensembl
mRatBN7.2 Ensembl	7	107,440,694 - 107,525,451 (-)	Ensembl
Rnor_6.0 Ensembl	7	116,787,766 - 116,872,511 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101021 ⟹ ENSRNOP00000091404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	109,322,536 - 109,406,172 (-)	Ensembl
mRatBN7.2 Ensembl	7	107,442,272 - 107,525,451 (-)	Ensembl

RefSeq Acc Id:

NM_001134865 ⟹ NP_001128337

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	109,321,423 - 109,406,172 (-)	NCBI
mRatBN7.2	7	107,440,694 - 107,525,451 (-)	NCBI
Rnor_6.0	7	116,787,762 - 116,872,536 (-)	NCBI
Rnor_5.0	7	116,679,040 - 116,765,271 (-)	NCBI
RGSC_v3.4	7	113,714,123 - 113,813,124 (-)	RGD
Celera	7	103,802,384 - 103,885,283 (-)	RGD

Sequence:

show sequence

CGTTGAGGGGGTCTGGCTAGGCGTCGCGGACTCCGGAGATGGAGGAAAAGGAGCAGCTGCGGCG
GCAGATACGCCTCCTGCAGGGTCTAATTGACGACTATAAAACCCTCCACGGCAATGGCCCTGCC
CATGGCTCCTCATCAGCTACTCGGTGGCAGCCACCTGTGTTCCAGGGTGGCAGGACCTTTGGCT
CCCGCTACTCCCGTCCAAATCGGAGGGGCTTCTCTTCACACCATGGCCCTTCATGGCGCAAGAA
ATACTCCCTTGTGAATCAGCCTCTGGAATCTTCTGACCCAGCCAGTGATCATGCTTTGCAGGCA
TCCCTCCGTGAGGATAGCCAGCATCCTGAACCCCAGCCGTACGTCCTGGAGAGACAGGTCCAGC
TCAGTCCAGATCAGAATATGGTCATTAAGATCAAGCCACCATCAAAGACAGGGTCTATCAATGT
TTCAGGGGTCCAGCGGGGTTCCTTGGAAGACTGTGATGACCCCTCTTGGAGTGACCAAAGACCC
CAAGGAAGCGAGGTTGAGGTCCCTGGTGGACAGCTGCAGCCTCCAAGGCCAGGAAGAACCAAGA
TGGGTTACAGTGTGGACGACCCCCTCTTGGTCTGCCAGAAGGAGCCTGGCAAGCCTCGGGTAGT
GAAGTCTGTGGGCAGAATTAATGACAGCTCTCCTGAGCACCGACGGACAGTCAGTGAAAGTGAA
ATTGCCATCAAGGCACACTTCCCATCCTCTGTCCTACCCCAACGCACTGGTGTGGCTCTGGGCC
GGAAGGTCGGCCTTCATTCTACCAGCTATTCTGAACAGTTTATTGGAGACCAAAAAGCAAATAT
TGGCCATGCAGACCGACTAGCTTCCTTGGGGTCAGTGGTGGCTCCAGTCAGACCAGCAACGGGA
ACCAGGCAGGTCAGGGAGGCCTCACTGCTAGTGTCTTGTCGAACCAGCAAGTTTCGGAAAAACA
ACTACAAATGGGTAGCTGCCTCACAAAAGAGCCCCCGGGTCACTCGGAGAGCTCTCAGTCCCAG
AACAACTCTGGAGAGTGTGAACAAGGCCGCTTTCGGTATGGGTGTAAAGACCGAGAAGTCACAG
CATAAGGTTGACCCAGGGGCGAGGCCTGAGAAACTGGCCACACCAGCCAAGGCTGGAGCCTCTC
CCAGCAAGTACAAGTGGAAGGCTTCCAGCCCCTCGGCCTCCTCTTCTTCCTCTTTCCGTTGGCA
GTCTGAGGCTGGCAGCAAGGACCATACTTCTCAGCTCTCCCCAGTTCTATCTAGGCCCCCGTCA
GGGGACAGACCAGCAGGGGTACCCAGCAACTCGAAGCCCCTCTTTGGAGAGTCACAGCTCTCAG
CTTACAAAGTGAAGAGCCGAACCAAGATTATCCGGAGGCGGGGCAATACCAGCCTTCCTGGGGA
CAAGAAGATCAGCCCCTCAGCTGCCACCACCAACAAAAACCATCTTACCCAGCGACGGAGACAG
GCCCTCCGGGGGAAGAGTAGCCCCATTCTAAGGAAGACTCCTCAGAAGGGTCTGATGCAGGTCA
ACAGGCATCGGCTGTGCTGTGTGCCATCCAGCCGGACCCACCTCTCCAGCAAGGAAGCTTCCAA
TGCGCACATACGGATTCCGCCCTCCAATAAGGTGATCAAGACCCGCTACCGCATTGTCAAGAAG
ACCCCAAGCTCTTCCTTTGGTGCTCCGTCCTTCCCCTCATCTATACCCTCCTGGCGGGCCCGGC
GCATCTCGTTATCAAGGTCTCTAGTGCTGAACCGCCTTCGTCCAACAATCACTGGGGGAGGGAA
AGCACCACCTGGTTCCCCTCGATGGCGTAACAAAGGCTACCGATGCATTGGAGGGGTTCTGTAC
AAGGTGTCTGCCAACAAGCTCTCCAAGACCTCCAGCAGGCCCAGTGACAGCAACAGGGCCCTCC
TCCGAACAGGACGCCTGGACCCTGCCACTACCAGCAGTCGTTCCTTGGCCAGCCGGGCCATCCA
GCGGAGTCTGGCTATCATCCGGCAGGCGAAGCAGAAGAAAGAGAAGAAAAGAGAGTACTGCATG
TATTACAACCGTTTTGGCAGGTGTAACCGTGGCGAATGCTGCCCCTACATCCATGACCCTGAGA
AGGTGGCCGTGTGCACCAGATTTGTCCGAGGCACGTGCAAGAAGACAGATGGGTCCTGCCCTTT
CTCTCATCATGTGTCCAAGGAAAAGATGCCTGTGTGCTCCTACTTTCTGAAGGGGATCTGCAGC
AACAGCAACTGCCCCTACAGCCACGTGTATGTGTCCCGCAAGGCCGAAGTCTGCGGTGACTTCC
TCAAAGGCTATTGCCCACTGGGTGCGAAGTGTAAGAAGAAGCACACACTGCTGTGTCCTGACTT
TGCCCGCAGGGGTGTTTGTCCCCGTGGCACCCAGTGCCAGCTGCTTCATCGTAACCAGAAGCGA
CATGGCCGGCGGACAGCTGCACCTCCTATCCCAGGGCCCAGTGATGGAACCCCCAGAAGCAAGG
CCTCAGCCGGCCATGCACTCAGGAAGCCCACTACTACTCCGCGCCCTGCCAGACAGATGTCCAG
TGGTCTGGCTTCCAGAACGGAGGCCCCAGCCTCCCCTCCCCCCTCCCCAAGGGTATTAGCCTCC
ACCTCTACCCTGTCTTCAAAGGCCACTGCTGCCTCCTCTCCTTCCTCTTCTCCCTCCACTGGTT
CCTCCACCCCTTCCTTGGATCAGGAAGAAGCTGTCTCTGGGACAGGCGGGGCAGGCTCAGGAAC
AGGCTCTGGCAGCCTCTGCAAGCTACCATCCTTTATCTCCCTGCATTCCTCTCCAAGCCCAGGA
GGCCAGACTGGGCCCCAGGCCCCCAGGAGCCCCCGCCCGAAGGACTCAGGGAAGCCGCTACACA
TCAAACCACGCCTGTGAGGCTCCCTGGGGACCAGCCCGCACCTACCTCAGACCCTCACCCCTGG
AGAGAATGGAGGCTCTACCCACCACTGCTCCTGAGGAGAAGCAGCCTGCCACTGAGCCCAGCTG
GGGCTAAAAGCAGGGATACATAGCTCCTCCCATTTGGCTCACAGCCGCTGGAGGCCTTTGTGTG
CCCAGGCCTTGTTCTCCCTCAAGCCAAGGCCCTGTCCGTTCCCTGTTCCTCTCCTTCCCCTCTT
CCCTTTTTCCCCTCCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCC
ACCCATAAGGATGCCATGTGAGTTCATCCTAGCCTGTCTCCTGTGGTGGTGGCAGTGGCAGTAG
TTGTAGGACTGGTGTCCCCAACCCTCCCTACCCAGGACTCCTGCCCAGGGAAGAGGCTACTGGC
CAGGCCTCTCTGGTGGGCATTTTATGTTCAGCAATAAAGGTTTTATCCTGTGTCTA

hide sequence

RefSeq Acc Id:

XM_063263275 ⟹ XP_063119345

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	109,321,427 - 109,406,241 (-)	NCBI

RefSeq Acc Id:

XM_063263276 ⟹ XP_063119346

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	109,321,427 - 109,406,200 (-)	NCBI

RefSeq Acc Id:

XM_063263277 ⟹ XP_063119347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	109,321,427 - 109,404,983 (-)	NCBI

RefSeq Acc Id:

XM_063263278 ⟹ XP_063119348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	109,321,427 - 109,364,163 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128337	(Get FASTA)	NCBI Sequence Viewer
	XP_063119345	(Get FASTA)	NCBI Sequence Viewer
	XP_063119346	(Get FASTA)	NCBI Sequence Viewer
	XP_063119347	(Get FASTA)	NCBI Sequence Viewer
	XP_063119348	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16051	(Get FASTA)	NCBI Sequence Viewer
	EDM16052	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010120
	ENSRNOP00000010120.4
	ENSRNOP00000091404
	ENSRNOP00000091404.2

RefSeq Acc Id:

NP_001128337 ⟸ NM_001134865

- UniProtKB:

D3ZKY5 (UniProtKB/TrEMBL), A0A8I6GIY9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEEKEQLRRQIRLLQGLIDDYKTLHGNGPAHGSSSATRWQPPVFQGGRTFGSRYSRPNRRGFSS
HHGPSWRKKYSLVNQPLESSDPASDHALQASLREDSQHPEPQPYVLERQVQLSPDQNMVIKIKP
PSKTGSINVSGVQRGSLEDCDDPSWSDQRPQGSEVEVPGGQLQPPRPGRTKMGYSVDDPLLVCQ
KEPGKPRVVKSVGRINDSSPEHRRTVSESEIAIKAHFPSSVLPQRTGVALGRKVGLHSTSYSEQ
FIGDQKANIGHADRLASLGSVVAPVRPATGTRQVREASLLVSCRTSKFRKNNYKWVAASQKSPR
VTRRALSPRTTLESVNKAAFGMGVKTEKSQHKVDPGARPEKLATPAKAGASPSKYKWKASSPSA
SSSSSFRWQSEAGSKDHTSQLSPVLSRPPSGDRPAGVPSNSKPLFGESQLSAYKVKSRTKIIRR
RGNTSLPGDKKISPSAATTNKNHLTQRRRQALRGKSSPILRKTPQKGLMQVNRHRLCCVPSSRT
HLSSKEASNAHIRIPPSNKVIKTRYRIVKKTPSSSFGAPSFPSSIPSWRARRISLSRSLVLNRL
RPTITGGGKAPPGSPRWRNKGYRCIGGVLYKVSANKLSKTSSRPSDSNRALLRTGRLDPATTSS
RSLASRAIQRSLAIIRQAKQKKEKKREYCMYYNRFGRCNRGECCPYIHDPEKVAVCTRFVRGTC
KKTDGSCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCGDFLKGYCPLGAKCKK
KHTLLCPDFARRGVCPRGTQCQLLHRNQKRHGRRTAAPPIPGPSDGTPRSKASAGHALRKPTTT
PRPARQMSSGLASRTEAPASPPPSPRVLASTSTLSSKATAASSPSSSPSTGSSTPSLDQEEAVS
GTGGAGSGTGSGSLCKLPSFISLHSSPSPGGQTGPQAPRSPRPKDSGKPLHIKPRL

hide sequence

Ensembl Acc Id:

ENSRNOP00000010120 ⟸ ENSRNOT00000010120

Ensembl Acc Id:

ENSRNOP00000091404 ⟸ ENSRNOT00000101021

RefSeq Acc Id:	XP_063119345 ⟸ XM_063263275
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GIY9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119346 ⟸ XM_063263276
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GIY9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119347 ⟸ XM_063263277
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GIY9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119348 ⟸ XM_063263278
- Peptide Label:	isoform X3

Protein Domains

C3H1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZKY5-F1-model_v2	AlphaFold	D3ZKY5	1-952	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695390

Promoter ID:

EPDNEW_R5915

Type:

multiple initiation site

Name:

Zc3h3_1

Description:

zinc finger CCCH type containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	116,872,524 - 116,872,584	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307276	AgrOrtholog
BioCyc Gene	G2FUF-32982	BioCyc
Ensembl Genes	ENSRNOG00000007684	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010120	ENTREZGENE
	ENSRNOT00000010120.7	UniProtKB/TrEMBL
	ENSRNOT00000101021	ENTREZGENE
	ENSRNOT00000101021.2	UniProtKB/TrEMBL
Gene3D-CATH	Zinc finger, CCCH-type	UniProtKB/TrEMBL
InterPro	Znf_CCCH	UniProtKB/TrEMBL
	Znf_CCCH_sf	UniProtKB/TrEMBL
KEGG Report	rno:300032	UniProtKB/TrEMBL
NCBI Gene	300032	ENTREZGENE
PANTHER	CCCH ZINGC FINGER	UniProtKB/TrEMBL
	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
Pfam	zf-CCCH	UniProtKB/TrEMBL
PhenoGen	Zc3h3	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007684	RatGTEx
SMART	ZnF_C3H1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF90229	UniProtKB/TrEMBL
UniProt	A0A8I6GIY9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZKY5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Zc3h3	zinc finger CCCH type containing 3	Zc3hdc3_predicted	zinc finger CCCH type domain containing 3 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Zc3hdc3_predicted	zinc finger CCCH type domain containing 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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